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{{CL
{{CL
|id=CL:0002609
|alt_id=
|name=neuron of cerebral cortex
|namespace=cell
|def="A CNS neuron of the cerebral cortex." [GOC:tfm]
|xref=BTO:0004102
|is_a=CL:0000117
|synonym="cortical neuron" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T07:37:08Z
|def="A CNS neuron of the cerebral cortex." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002609
|is_a=CL:0010012 ;;CL:0012001
|is_obsolete=
|located_in=
|located_in=
|name=neuron of cerebral cortex
|namespace=FANTOM
|obo_creation_date=2011-03-06T07:37:08Z
|part_of=UBERON:0000956
|part_of=UBERON:0000956
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="cortical neuron" EXACT []
|union_of=
|xref=BTO:0004102;;FMA:84104
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:neuron of cerebral cortex
Namespace:FANTOM
Definition:"A CNS neuron of the cerebral cortex." [GOC:tfm]
Xrefs:
links:

BTO:0004102

FMA:84104
Synonyms: "cortical neuron" EXACT []
Created by:tmeehan
Creation date:2011-03-06T07:37:08Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0010012(cerebral cortex neuron),CL:0012001(neuron of the forebrain)
part_of:UBERON:0000956(cerebral cortex)



Children


derives from:FF:0000204 (cortical mouse neuron sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002609 (neuron of cerebral cortex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.36e-86FFCP PHASE1:Mm9::chr4:82879069..82879081,-#_9ec1c551d5b69d6244b85dcff0b31f01p8@Ttc39b
1.36e-86FFCP PHASE2:Mm9::chr4:82879069..82879081,-#_9ec1c551d5b69d6244b85dcff0b31f01p8@Ttc39b
1.01e-74FFCP PHASE1:Mm9::chr5:99703670..99703683,+#_5032f7c18de5cbe0f635cc3cfe7d184dp@chr5:99703670..99703683, +
1.01e-74FFCP PHASE2:Mm9::chr5:99703670..99703683,+#_5032f7c18de5cbe0f635cc3cfe7d184dp@chr5:99703670..99703683, +
2.48e-72FFCP PHASE2:Mm9::chr12:109150430..109150441,-#_54f10a7b558cde98ac7f8c5be9eef78bp@chr12:109150430..109150441, -
2.48e-72FFCP PHASE2:Mm9::chr1:41800574..41800586,+#_54f10a7b558cde98ac7f8c5be9eef78bp@chr1:41800574..41800586, +
2.48e-72FFCP PHASE1:Mm9::chr1:173959095..173959106,-#_54f10a7b558cde98ac7f8c5be9eef78bp@chr1:173959095..173959106, -
2.48e-72FFCP PHASE1:Mm9::chr15:83602482..83602487,+#_54f10a7b558cde98ac7f8c5be9eef78bp@chr15:83602482..83602487, +
2.48e-72FFCP PHASE1:Mm9::chr1:41800574..41800586,+#_54f10a7b558cde98ac7f8c5be9eef78bp@chr1:41800574..41800586, +
2.48e-72FFCP PHASE2:Mm9::chr15:83602482..83602487,+#_54f10a7b558cde98ac7f8c5be9eef78bp@chr15:83602482..83602487, +
2.48e-72FFCP PHASE1:Mm9::chr12:109150430..109150441,-#_54f10a7b558cde98ac7f8c5be9eef78bp@chr12:109150430..109150441, -
2.48e-72FFCP PHASE2:Mm9::chr1:173959095..173959106,-#_54f10a7b558cde98ac7f8c5be9eef78bp@chr1:173959095..173959106, -
8.11e-66FFCP PHASE2:Mm9::chr9:41387743..41387752,+#_547b9ca565223778eee08d7db2e79dffp@chr9:41387743..41387752, +
8.11e-66FFCP PHASE1:Mm9::chr9:41387743..41387752,+#_547b9ca565223778eee08d7db2e79dffp@chr9:41387743..41387752, +
1.05e-65FFCP PHASE1:Mm9::chr2:151906634..151906642,+#_91945b6d3b1dc1aad9ac884f341e7ed3p@chr2:151906634..151906642, +
1.05e-65FFCP PHASE2:Mm9::chr2:151906634..151906642,+#_91945b6d3b1dc1aad9ac884f341e7ed3p@chr2:151906634..151906642, +
1.0e-60FFCP PHASE1:Mm9::chr10:42298108..42298119,-#_d64acd6c684286158f7279adfda31621p@chr10:42298108..42298119, -
1.0e-60FFCP PHASE2:Mm9::chr10:42298108..42298119,-#_d64acd6c684286158f7279adfda31621p@chr10:42298108..42298119, -
1.33e-60FFCP PHASE1:Mm9::chr8:127316961..127316970,+#_a1c60ee6d8d9280b55127f9d4af8d4e8p4@Trim67
1.33e-60FFCP PHASE2:Mm9::chr8:127316961..127316970,+#_a1c60ee6d8d9280b55127f9d4af8d4e8p4@Trim67
1.77e-60FFCP PHASE1:Mm9::chr12:50482811..50482817,-#_c257793a7166bf9edc0c06b1caf977aep@chr12:50482811..50482817, -
1.77e-60FFCP PHASE2:Mm9::chr12:50482811..50482817,-#_c257793a7166bf9edc0c06b1caf977aep@chr12:50482811..50482817, -
2.34e-60FFCP PHASE1:Mm9::chr2:35960327..35960338,-#_89a19d692574fdbe3c8ad4066d6d2aeep@chr2:35960327..35960338, -
2.34e-60FFCP PHASE2:Mm9::chr2:35960327..35960338,-#_89a19d692574fdbe3c8ad4066d6d2aeep@chr2:35960327..35960338, -
8.66e-59FFCP PHASE2:Mm9::chr1:41800521..41800543,+#_3ebd5b7295be411c635615f52a176318p@chr1:41800521..41800543, +
8.66e-59FFCP PHASE1:Mm9::chr1:41800521..41800543,+#_3ebd5b7295be411c635615f52a176318p@chr1:41800521..41800543, +
1.09e-58FFCP PHASE2:Mm9::chr1:57028182..57028191,-#_42e620c8decf87ea7d9412db24b392ebp11@Satb2
1.09e-58FFCP PHASE1:Mm9::chr1:57028182..57028191,-#_42e620c8decf87ea7d9412db24b392ebp11@Satb2
1.71e-58FFCP PHASE1:Mm9::chr12:28025618..28025629,-#_c57bb6a51287bb14c2d3f7657093f1e5p@chr12:28025618..28025629, -
1.71e-58FFCP PHASE2:Mm9::chr12:28025618..28025629,-#_c57bb6a51287bb14c2d3f7657093f1e5p@chr12:28025618..28025629, -
3.91e-58FFCP PHASE1:Mm9::chr11:98233288..98233299,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr11:98233288..98233299, +
3.91e-58FFCP PHASE1:Mm9::chr6:144157960..144157967,-#_5a3ded3869d97eecd4e84cc96c0b0e6ap20@Sox5
3.91e-58FFCP PHASE2:Mm9::chr11:98233288..98233299,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr11:98233288..98233299, +
3.91e-58FFCP PHASE1:Mm9::chr11:69843632..69843643,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap28@Dlg4
3.91e-58FFCP PHASE2:Mm9::chr6:144157960..144157967,-#_5a3ded3869d97eecd4e84cc96c0b0e6ap20@Sox5
3.91e-58FFCP PHASE2:Mm9::chr6:97567621..97567636,-#_5a3ded3869d97eecd4e84cc96c0b0e6ap19@Frmd4b
3.91e-58FFCP PHASE2:Mm9::chr12:50486639..50486645,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr12:50486639..50486645, +
3.91e-58FFCP PHASE2:Mm9::chr11:98187500..98187512,-#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr11:98187500..98187512, -
3.91e-58FFCP PHASE1:Mm9::chr2:6792577..6792584,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr2:6792577..6792584, +
3.91e-58FFCP PHASE2:Mm9::chr2:6792577..6792584,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr2:6792577..6792584, +
3.91e-58FFCP PHASE1:Mm9::chr6:97567621..97567636,-#_5a3ded3869d97eecd4e84cc96c0b0e6ap19@Frmd4b
3.91e-58FFCP PHASE2:Mm9::chr11:69843632..69843643,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap28@Dlg4
3.91e-58FFCP PHASE1:Mm9::chr12:50486639..50486645,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr12:50486639..50486645, +
3.91e-58FFCP PHASE1:Mm9::chr11:98187500..98187512,-#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr11:98187500..98187512, -
2.97e-53FFCP PHASE2:Mm9::chr5:122345353..122345358,-#_f55fcf0224b039e2f66f598c474f6ffbp5@Cux2
2.97e-53FFCP PHASE1:Mm9::chr5:122345353..122345358,-#_f55fcf0224b039e2f66f598c474f6ffbp5@Cux2
3.65e-53FFCP PHASE2:Mm9::chr6:144158267..144158282,-#_1e2a36ea50cc2036f31535978c24c1b8p16@Sox5
3.65e-53FFCP PHASE1:Mm9::chr6:144158267..144158282,-#_1e2a36ea50cc2036f31535978c24c1b8p16@Sox5
3.65e-53FFCP PHASE2:Mm9::chr12:50483044..50483065,+#_1e2a36ea50cc2036f31535978c24c1b8p@chr12:50483044..50483065, +
3.65e-53FFCP PHASE1:Mm9::chr12:50483044..50483065,+#_1e2a36ea50cc2036f31535978c24c1b8p@chr12:50483044..50483065, +
4.48e-53FFCP PHASE1:Mm9::chr5:111846145..111846158,-#_0f8825516df0d030984210b77e5806ebp@chr5:111846145..111846158, -
4.48e-53FFCP PHASE2:Mm9::chr5:111846145..111846158,-#_0f8825516df0d030984210b77e5806ebp@chr5:111846145..111846158, -
6.75e-53FFCP PHASE2:Mm9::chr5:111847671..111847682,+#_7d3935adfd36998427ad66d117b77e9ap@chr5:111847671..111847682, +
6.75e-53FFCP PHASE1:Mm9::chr5:111847671..111847682,+#_7d3935adfd36998427ad66d117b77e9ap@chr5:111847671..111847682, +
1.99e-52FFCP PHASE2:Mm9::chr6:55629311..55629338,-#_3fc5320eb1946155dd404d4056966407p@chr6:55629311..55629338, -
1.99e-52FFCP PHASE1:Mm9::chr6:55629311..55629338,-#_3fc5320eb1946155dd404d4056966407p@chr6:55629311..55629338, -
2.53e-52FFCP PHASE2:Mm9::chr14:13178294..13178303,-#_108d9a494fb3c50eb1ab565d7df42775p7@Fezf2
2.53e-52FFCP PHASE1:Mm9::chr14:13178294..13178303,-#_108d9a494fb3c50eb1ab565d7df42775p7@Fezf2
3.23e-52FFCP PHASE1:Mm9::chr1:179372666..179372678,+#_fc4e055b65c74fe46396cd0cf2f8c237p11@Zfp238
3.23e-52FFCP PHASE2:Mm9::chr1:179372666..179372678,+#_fc4e055b65c74fe46396cd0cf2f8c237p11@Zfp238
4.11e-52FFCP PHASE2:Mm9::chr9:120954001..120954018,-#_0a3233bcf5b250e26fbc134474d8654cp6@Ulk4
4.11e-52FFCP PHASE1:Mm9::chr9:120954001..120954018,-#_0a3233bcf5b250e26fbc134474d8654cp6@Ulk4
4.22e-52FFCP PHASE2:Mm9::chr16:6348598..6348614,+#_f94c765a7e4058db6e56a4aba5476b9cp@chr16:6348598..6348614, +
4.22e-52FFCP PHASE1:Mm9::chr16:6348598..6348614,+#_f94c765a7e4058db6e56a4aba5476b9cp@chr16:6348598..6348614, +
5.23e-52FFCP PHASE1:Mm9::chr8:12395287..12395295,+#_28f276a63f9ef52ebeecc310b6e63e7bp9@Sox1
5.23e-52FFCP PHASE2:Mm9::chr8:12395287..12395295,+#_28f276a63f9ef52ebeecc310b6e63e7bp9@Sox1
8.37e-49FFCP PHASE1:Mm9::chr2:151906701..151906711,+#_1df69dc117499b130ce788076a876246p@chr2:151906701..151906711, +
8.37e-49FFCP PHASE2:Mm9::chr2:151906701..151906711,+#_1df69dc117499b130ce788076a876246p@chr2:151906701..151906711, +
8.37e-49FFCP PHASE2:Mm9::chr12:28022440..28022451,-#_1df69dc117499b130ce788076a876246p@chr12:28022440..28022451, -
8.37e-49FFCP PHASE1:Mm9::chr12:28022440..28022451,-#_1df69dc117499b130ce788076a876246p@chr12:28022440..28022451, -
1.47e-48FFCP PHASE2:Mm9::chr6:55631324..55631335,-#_bd005bf3e9776267f32a5ba4ea3eb812p3@Neurod6
1.47e-48FFCP PHASE1:Mm9::chr6:55631324..55631335,-#_bd005bf3e9776267f32a5ba4ea3eb812p3@Neurod6
1.77e-48FFCP PHASE1:Mm9::chr12:28026549..28026562,-#_bacf71d4a56875fd65bee8e95565d622p@chr12:28026549..28026562, -
1.77e-48FFCP PHASE2:Mm9::chr12:28026549..28026562,-#_bacf71d4a56875fd65bee8e95565d622p@chr12:28026549..28026562, -
2.57e-48FFCP PHASE2:Mm9::chr8:71708148..71708156,-#_e5591d82b3690474441e349202b8b21fp2@ENSMUST00000172413, p2@uc009lxb.1
2.57e-48FFCP PHASE1:Mm9::chr8:71708148..71708156,-#_e5591d82b3690474441e349202b8b21fp2@ENSMUST00000172413, p2@uc009lxb.1
2.57e-48FFCP PHASE1:Mm9::chr1:179372543..179372557,+#_e5591d82b3690474441e349202b8b21fp9@Zfp238
2.57e-48FFCP PHASE2:Mm9::chr1:179372543..179372557,+#_e5591d82b3690474441e349202b8b21fp9@Zfp238
6.34e-47FFCP PHASE2:Mm9::chr12:50485922..50485933,+#_6f9867f59f778bedeed3740c94c0c42ep11@Foxg1
6.34e-47FFCP PHASE1:Mm9::chr12:50485922..50485933,+#_6f9867f59f778bedeed3740c94c0c42ep11@Foxg1
6.34e-47FFCP PHASE2:Mm9::chr6:55631282..55631299,+#_6f9867f59f778bedeed3740c94c0c42ep@chr6:55631282..55631299, +
6.34e-47FFCP PHASE1:Mm9::chr6:55631282..55631299,+#_6f9867f59f778bedeed3740c94c0c42ep@chr6:55631282..55631299, +
8.31e-47FFCP PHASE1:Mm9::chr6:144157869..144157876,-#_76523d43a5fa534ee4655342684ebc5dp26@Sox5
8.31e-47FFCP PHASE2:Mm9::chr6:144157869..144157876,-#_76523d43a5fa534ee4655342684ebc5dp26@Sox5
1.86e-46FFCP PHASE2:Mm9::chr1:42770594..42770600,-#_d23ce86167ca8d63f15408561e9880dcp@chr1:42770594..42770600, -
1.86e-46FFCP PHASE1:Mm9::chr1:42770594..42770600,-#_d23ce86167ca8d63f15408561e9880dcp@chr1:42770594..42770600, -
3.34e-46FFCP PHASE1:Mm9::chr3:84108569..84108582,-#_8534dfaa0be2e09c5a95175f4b8cfdbdp22@Trim2
3.34e-46FFCP PHASE2:Mm9::chr3:84108569..84108582,-#_8534dfaa0be2e09c5a95175f4b8cfdbdp22@Trim2
4.13e-46FFCP PHASE2:Mm9::chr12:28022352..28022363,-#_fa228b6952b6e1c76c08e226b98eb2aap@chr12:28022352..28022363, -
4.13e-46FFCP PHASE2:Mm9::chr12:50478644..50478659,+#_fa228b6952b6e1c76c08e226b98eb2aap@chr12:50478644..50478659, +
4.13e-46FFCP PHASE2:Mm9::chr12:50485343..50485352,+#_fa228b6952b6e1c76c08e226b98eb2aap@chr12:50485343..50485352, +
4.13e-46FFCP PHASE1:Mm9::chr12:28022352..28022363,-#_fa228b6952b6e1c76c08e226b98eb2aap@chr12:28022352..28022363, -
4.13e-46FFCP PHASE1:Mm9::chr12:50478644..50478659,+#_fa228b6952b6e1c76c08e226b98eb2aap@chr12:50478644..50478659, +
4.13e-46FFCP PHASE1:Mm9::chr12:50485343..50485352,+#_fa228b6952b6e1c76c08e226b98eb2aap@chr12:50485343..50485352, +
5.11e-46FFCP PHASE1:Mm9::chr11:98189657..98189671,-#_9690926b2729b2cfaa62bd72cb674f54p@chr11:98189657..98189671, -
5.11e-46FFCP PHASE2:Mm9::chr12:50485948..50485959,+#_9690926b2729b2cfaa62bd72cb674f54p7@Foxg1
5.11e-46FFCP PHASE2:Mm9::chr11:98189657..98189671,-#_9690926b2729b2cfaa62bd72cb674f54p@chr11:98189657..98189671, -
5.11e-46FFCP PHASE1:Mm9::chr12:28026469..28026480,-#_9690926b2729b2cfaa62bd72cb674f54p@chr12:28026469..28026480, -
5.11e-46FFCP PHASE1:Mm9::chr12:50485948..50485959,+#_9690926b2729b2cfaa62bd72cb674f54p7@Foxg1
5.11e-46FFCP PHASE2:Mm9::chr12:28026469..28026480,-#_9690926b2729b2cfaa62bd72cb674f54p@chr12:28026469..28026480, -

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