FFCP PHASE1:Hg19::chr14:55243185..55243200,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23034 | |EntrezGene=23034 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23023 | |HGNC=23023 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=56bp_to_ENST00000553988_5end | |association_with_transcript=56bp_to_ENST00000553988_5end | ||
|cluster_id=chr14:55243185..55243200,+ | |||
|coexpression_cluster_id=C2301 | |||
|description=CAGE_peak_16_at_SAMD4A_5end | |description=CAGE_peak_16_at_SAMD4A_5end | ||
|id=chr14:55243185..55243200,+ | |id=chr14:55243185..55243200,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.49e-75!42;CL:0000860!1.30e-69!45;CL:0002194!1.75e-47!63;CL:0000576!1.75e-47!63;CL:0000040!1.75e-47!63;CL:0000559!1.75e-47!63;CL:0002009!1.23e-45!65;CL:0000766!7.65e-44!76;CL:0000839!1.77e-41!70;CL:0000557!1.02e-40!71;CL:0002087!2.87e-39!119;CL:0000738!1.44e-35!140;CL:0002031!1.82e-32!124;CL:0000037!3.70e-28!172;CL:0000566!3.70e-28!172;CL:0000763!9.03e-27!112;CL:0000049!9.03e-27!112;CL:0000988!1.12e-25!182;CL:0002032!3.05e-25!165;CL:0000837!3.05e-25!165;CL:0002393!1.09e-19!9;CL:0002397!1.09e-19!9;CL:0000134!9.74e-09!358;CL:0002320!2.89e-08!365;CL:0000219!6.39e-08!390;CL:0000875!7.12e-08!3;CL:0002396!7.12e-08!3;CL:0000767!4.40e-07!3 | |ontology_enrichment_celltype=CL:0002057!1.49e-75!42;CL:0000860!1.30e-69!45;CL:0002194!1.75e-47!63;CL:0000576!1.75e-47!63;CL:0000040!1.75e-47!63;CL:0000559!1.75e-47!63;CL:0002009!1.23e-45!65;CL:0000766!7.65e-44!76;CL:0000839!1.77e-41!70;CL:0000557!1.02e-40!71;CL:0002087!2.87e-39!119;CL:0000738!1.44e-35!140;CL:0002031!1.82e-32!124;CL:0000037!3.70e-28!172;CL:0000566!3.70e-28!172;CL:0000763!9.03e-27!112;CL:0000049!9.03e-27!112;CL:0000988!1.12e-25!182;CL:0002032!3.05e-25!165;CL:0000837!3.05e-25!165;CL:0002393!1.09e-19!9;CL:0002397!1.09e-19!9;CL:0000134!9.74e-09!358;CL:0002320!2.89e-08!365;CL:0000219!6.39e-08!390;CL:0000875!7.12e-08!3;CL:0002396!7.12e-08!3;CL:0000767!4.40e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.44e-66;33!CL:0002057;1.44e-66;33!CL:0000576;1.56e-64;48!CL:0000473;6.61e-45;39!CL:0000234;6.61e-45;39!CL:0000766;1.16e-34;69!CL:0002393;2.71e-25;6!CL:0002397;2.71e-25;6!CL:0000875;3.35e-19;3!CL:0002396;3.35e-19;3!CL:0000763;4.43e-15;100!CL:0002087;5.14e-15;104!CL:0000738;3.71e-09;136!CL:0000988;9.20e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.91e-114,42;CL:0002057,7.91e-114,42;CL:0000473,6.07e-99,48;CL:0000234,6.07e-99,48;CL:0002194,4.28e-78,59;CL:0000576,4.28e-78,59;CL:0000040,4.28e-78,59;CL:0000559,4.28e-78,59;CL:0002009,2.10e-75,61;CL:0000839,2.23e-69,66;CL:0000557,2.80e-68,67;CL:0000766,7.44e-68,72;CL:0002087,1.05e-43,115;CL:0000763,1.23e-43,108;CL:0000049,1.23e-43,108;CL:0002393,1.99e-42,9;CL:0002397,1.99e-42,9;CL:0002031,1.15e-41,120;CL:0000738,8.93e-39,136;CL:0002032,6.46e-32,161;CL:0000837,6.46e-32,161;CL:0000037,2.34e-30,168;CL:0000988,1.56e-28,177;CL:0000875,3.46e-19,3;CL:0002396,3.46e-19,3;CL:0000134,2.23e-11,354;CL:0002320,4.85e-11,361;CL:0000219,7.44e-10,386;CL:0000048,2.12e-08,427;CL:0000723,3.36e-08,433;CL:0000034,6.12e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.01e-76;42!CL:0000049;6.12e-13;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:630;5.03e-07;1!DOID:0050177;5.03e-07;1!DOID:0050427;5.03e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,5.84e-07,1;DOID:0050177,5.84e-07,1;DOID:0050427,5.84e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.59e-37!102;UBERON:0003061!1.59e-37!102;UBERON:0002371!1.27e-36!80;UBERON:0002193!7.80e-36!112;UBERON:0001474!5.54e-35!86;UBERON:0004765!2.49e-29!101;UBERON:0001434!2.49e-29!101;UBERON:0002405!5.41e-24!115;UBERON:0002204!3.59e-17!167;UBERON:0003081!3.25e-13!216;UBERON:0002384!4.32e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.13e-59,76;UBERON:0001474,5.72e-55,82;UBERON:0002390,3.89e-52,98;UBERON:0003061,3.89e-52,98;UBERON:0004765,1.16e-49,90;UBERON:0002405,6.66e-48,93;UBERON:0002193,7.61e-47,108;UBERON:0001434,3.31e-44,100;UBERON:0002204,2.23e-24,167;UBERON:0003081,2.14e-22,203;UBERON:0000926,2.16e-12,315;UBERON:0004120,2.16e-12,315;UBERON:0006603,2.16e-12,315;UBERON:0002384,1.40e-10,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0.786728553697808,0.767658796194425,1.39334510984468,0,0,0,0.232401601740905,0.284338464974843,0.293600439334847,2.76997704265939,0.401088894940283,1.51907609501096,0,0,0,0.436194716338694,0,0.970336244751265,0.464858073811369,0.411167888021826,1.23882548358041,2.01384674625505,3.33008918487831,3.07426898855161,0,0.645484683583826,2.70852973188684,0.564727018627814,1.09162460023138,1.12361742222542,1.83650335422542,0.962787081228281,1.91801137739712,10.2253903057882,5.98390972864896,10.2293940127847,0.580418477257168,0.56738522469114,0.622822248995575,1.25624332628372,2.08593167368081,5.2125322729228,2.42159801053347,1.84138817993782,1.58231193720442,7.81644559354185,6.59073329891635,7.75736988380991,3.03287304095537,2.85336096398862,2.57160938715328,4.56020389985998,4.37616689837998,6.39324538176219,0,0,0,0,0.400395987036012,0.574752439954483,1.98313461835459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383959833463255,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0.144366447761074,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0.519254429183621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.952927101831156,1.64544909234478,1.29694662238543,0.540031437238115,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0.19924798825107,0.276283915531148,0,0.102268682502155,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,1.28227396921293 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0.786728553697808,0.767658796194425,1.39334510984468,0,0,0,0.232401601740905,0.284338464974843,0.293600439334847,2.76997704265939,0.401088894940283,1.51907609501096,0,0,0,0.436194716338694,0,0.970336244751265,0.464858073811369,0.411167888021826,1.23882548358041,2.01384674625505,3.33008918487831,3.07426898855161,0,0.645484683583826,2.70852973188684,0.564727018627814,1.09162460023138,1.12361742222542,1.83650335422542,0.962787081228281,1.91801137739712,10.2253903057882,5.98390972864896,10.2293940127847,0.580418477257168,0.56738522469114,0.622822248995575,1.25624332628372,2.08593167368081,5.2125322729228,2.42159801053347,1.84138817993782,1.58231193720442,7.81644559354185,6.59073329891635,7.75736988380991,3.03287304095537,2.85336096398862,2.57160938715328,4.56020389985998,4.37616689837998,6.39324538176219,0,0,0,0,0.400395987036012,0.574752439954483,1.98313461835459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383959833463255,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0.144366447761074,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0.519254429183621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.952927101831156,1.64544909234478,1.29694662238543,0.540031437238115,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0.19924798825107,0.276283915531148,0,0.102268682502155,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,1.28227396921293 | ||
|short_description=p16@SAMD4A | |short_description=p16@SAMD4A | ||
}} | }} |
Latest revision as of 15:00, 24 September 2015
Short description: | p16@SAMD4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_SAMD4A_5end |
Coexpression cluster: | C2301_CD14CD16_CD14_migratory_Dendritic_Basophils_Macrophage_myeloma |
Association with transcript: | 56bp_to_ENST00000553988_5end |
EntrezGene: | SAMD4A |
HGNC: | 23023 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.13e-59 | 76 |
bone element | 5.72e-55 | 82 |
hematopoietic system | 3.89e-52 | 98 |
blood island | 3.89e-52 | 98 |
skeletal element | 1.16e-49 | 90 |
immune system | 6.66e-48 | 93 |
hemolymphoid system | 7.61e-47 | 108 |
skeletal system | 3.31e-44 | 100 |
musculoskeletal system | 2.23e-24 | 167 |
lateral plate mesoderm | 2.14e-22 | 203 |
mesoderm | 2.16e-12 | 315 |
mesoderm-derived structure | 2.16e-12 | 315 |
presumptive mesoderm | 2.16e-12 | 315 |
connective tissue | 1.40e-10 | 371 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 5.84e-07 | 1 |
monogenic disease | 5.84e-07 | 1 |
xeroderma pigmentosum | 5.84e-07 | 1 |