FFCP PHASE1:Hg19::chr10:102505327..102505344,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr10:102505327..102505344,+
|short_description=p1@PAX2
|description=CAGE_peak_1_at_PAX2_5end
|association_with_transcript=-123bp_to_ENST00000355243,ENST0000036...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5076 | |EntrezGene=5076 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8616 | |HGNC=8616 | ||
|TSSclassifier=strong | |||
|UniProt=Q02962 | |UniProt=Q02962 | ||
|association_with_transcript=-123bp_to_ENST00000355243,ENST00000361791,ENST00000370294,ENST00000370296,ENST00000428433,NM_000278,NM_003987,NM_003988,NM_003989,NM_003990,uc001krk.3,uc001krl.3,uc001krm.3,uc001krn.3,uc001kro.3,uc010qps.1_5end | |||
|cluster_id=chr10:102505327..102505344,+ | |||
|coexpression_cluster_id=C39 | |||
|description=CAGE_peak_1_at_PAX2_5end | |||
|id=chr10:102505327..102505344,+ | |||
|ontology_enrichment_celltype=CL:1000497!8.80e-18!18;CL:0002518!8.80e-18!18;CL:1000507!6.11e-16!12;CL:1000494!6.11e-16!12;CL:1000449!3.96e-14!16;CL:0002322!9.84e-12!5;CL:0002681!1.08e-08!13;CL:0002584!1.08e-08!13 | |||
|ontology_enrichment_celltype_v019=CL:1000497;2.30e-34;17!CL:0002518;2.30e-34;17!CL:1000507;2.99e-32;10!CL:1000494;2.99e-32;10!CL:1000449;1.59e-26;15!CL:0002681;4.73e-15;12!CL:0002584;4.73e-15;12!CL:0000650;9.31e-12;2!CL:1000500;9.31e-12;2!CL:1000618;9.31e-12;2!CL:1001318;9.31e-12;2!CL:0002173;9.31e-12;2!CL:1000746;2.85e-07;7!CL:1000612;2.85e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,2.46e-34,17;CL:0002518,2.46e-34,17;CL:1000507,2.44e-32,10;CL:1000494,2.44e-32,10;CL:1000449,1.47e-26,15;CL:0002681,4.45e-15,12;CL:0002584,4.45e-15,12;CL:0000650,9.08e-12,2;CL:1000500,9.08e-12,2;CL:1000618,9.08e-12,2;CL:1001318,9.08e-12,2;CL:0002173,9.08e-12,2;CL:1000746,2.97e-07,7;CL:1000612,2.97e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0003918;4.77e-18;10!UBERON:0007687;4.77e-18;10!UBERON:0006241;8.54e-16;3!UBERON:0003057;8.54e-16;3!UBERON:0007297;7.54e-12;2!UBERON:0006215;1.89e-07;3!UBERON:0003104;1.98e-07;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!2.18e-35!32;UBERON:0002113!8.27e-29!27;UBERON:0003918!8.27e-29!27;UBERON:0005095!8.27e-29!27;UBERON:0007687!8.27e-29!27;UBERON:0006554!3.27e-21!44;UBERON:0001008!1.35e-20!45;UBERON:0000080!3.92e-18!18;UBERON:0002120!3.92e-18!18;UBERON:0004875!3.92e-18!18;UBERON:0005721!3.92e-18!18;UBERON:0005754!3.92e-18!18;UBERON:0007297!3.92e-18!18;UBERON:0003076!3.94e-17!15;UBERON:0003057!3.94e-17!15;UBERON:0006555!3.89e-16!17;UBERON:0005103!3.89e-16!17;UBERON:0000083!3.89e-16!17;UBERON:0009201!3.89e-16!17;UBERON:0004819!3.89e-16!17;UBERON:0006553!3.89e-16!17;UBERON:0003074!3.89e-16!17;UBERON:0003060!3.89e-16!17;UBERON:0000058!4.58e-16!26;UBERON:0004876!5.39e-16!20;UBERON:0009773!6.11e-16!12;UBERON:0001231!6.11e-16!12;UBERON:0004810!6.11e-16!12;UBERON:0005172!1.43e-15!55;UBERON:0005173!1.43e-15!55;UBERON:0003887!4.43e-15!21;UBERON:0004211!3.96e-14!16;UBERON:0001285!3.96e-14!16;UBERON:0007684!3.96e-14!16;UBERON:0003220!3.96e-14!16;UBERON:0004208!3.96e-14!16;UBERON:0003103!5.23e-14!69;UBERON:0002417!1.97e-13!61;UBERON:0000916!1.97e-13!61;UBERON:0003064!4.19e-13!37;UBERON:0003135!9.36e-13!11;UBERON:0003886!2.25e-12!63;UBERON:0004733!2.44e-11!12;UBERON:0002028!2.44e-11!12;UBERON:0007277!2.44e-11!12;UBERON:0005177!6.31e-11!107;UBERON:0002553!1.49e-10!70;UBERON:0004732!2.39e-10!13;UBERON:0002298!5.53e-10!8;UBERON:0000473!7.92e-10!8;UBERON:0006947!7.85e-09!3;UBERON:0004054!7.85e-09!3;UBERON:0003101!1.04e-08!22;UBERON:0000079!1.04e-08!22;UBERON:0001225!1.08e-08!13;UBERON:0008987!1.08e-08!13;UBERON:0001851!1.09e-08!16;UBERON:0002240!2.94e-08!3;UBERON:0001896!5.32e-08!3;UBERON:0005290!5.32e-08!3;UBERON:0010096!5.32e-08!3;UBERON:0005743!2.57e-07!86;UBERON:0000988!2.95e-07!3;UBERON:0001017!4.67e-07!82;UBERON:0000073!7.02e-07!94;UBERON:0001016!7.02e-07!94;UBERON:0007023!8.59e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;2.52e-47;29!UBERON:0002113;4.38e-39;24!UBERON:0011143;4.38e-39;24!UBERON:0004211;2.99e-32;10!UBERON:0009773;2.99e-32;10!UBERON:0001231;2.99e-32;10!UBERON:0004810;2.99e-32;10!UBERON:0006554;1.19e-30;30!UBERON:0001008;1.19e-30;30!UBERON:0006555;1.59e-26;15!UBERON:0004819;1.59e-26;15!UBERON:0001285;1.59e-26;15!UBERON:0007684;1.59e-26;15!UBERON:0006947;5.96e-17;3!UBERON:0004054;5.96e-17;3!UBERON:0002240;8.54e-16;3!UBERON:0005174;8.54e-16;3!UBERON:0001137;8.54e-16;3!UBERON:0001225;4.73e-15;12!UBERON:0008987;4.73e-15;12!UBERON:0005904;7.78e-13;4!UBERON:0005172;2.60e-12;52!UBERON:0005173;2.60e-12;52!UBERON:0001851;6.39e-12;15!UBERON:0000353;6.39e-12;15!UBERON:0003135;7.28e-12;11!UBERON:0003567;9.31e-12;2!UBERON:0003838;9.31e-12;2!UBERON:0003586;9.31e-12;2!UBERON:0005169;9.31e-12;2!UBERON:0002321;9.31e-12;2!UBERON:0005215;9.31e-12;2!UBERON:0002303;9.31e-12;2!UBERON:0002319;9.31e-12;2!UBERON:0002417;1.05e-11;58!UBERON:0000916;1.05e-11;58!UBERON:0003103;3.74e-11;61!UBERON:0004733;3.44e-10;12!UBERON:0002028;3.44e-10;12!UBERON:0004732;2.18e-09;13!UBERON:0000058;1.39e-08;10!UBERON:0002298;4.14e-08;6!UBERON:0001896;1.34e-07;3!UBERON:0005290;1.34e-07;3!UBERON:0000074;2.85e-07;7!UBERON:0001229;2.85e-07;7!UBERON:0001301;7.49e-07;1!UBERON:0001000;8.34e-07;1!UBERON:0005352;8.34e-07;1 | |||
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| ||
|short_description=p1@PAX2 | |||
}} | }} |
Latest revision as of 22:10, 15 September 2015
Short description: | p1@PAX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PAX2_5end |
Coexpression cluster: | C39_epididymis_ductus_seminal_testis_acute_thyroid_CD133 |
Association with transcript: | -123bp_to_ENST00000355243, ENST00000361791, ENST00000370294, ENST00000370296, ENST00000428433, NM_000278, NM_003987, NM_003988, NM_003989, NM_003990, uc001krk.3, uc001krl.3, uc001krm.3, uc001krn.3, uc001kro.3, uc010qps.1_5end |
EntrezGene: | PAX2 |
HGNC: | 8616 |
UniProt: | Q02962 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 2.46e-34 | 17 |
kidney epithelial cell | 2.46e-34 | 17 |
kidney tubule cell | 2.44e-32 | 10 |
nephron tubule epithelial cell | 2.44e-32 | 10 |
epithelial cell of nephron | 1.47e-26 | 15 |
kidney cortical cell | 4.45e-15 | 12 |
renal cortical epithelial cell | 4.45e-15 | 12 |
mesangial cell | 9.08e-12 | 2 |
kidney interstitial cell | 9.08e-12 | 2 |
juxtaglomerular complex cell | 9.08e-12 | 2 |
renal interstitial pericyte | 9.08e-12 | 2 |
extraglomerular mesangial cell | 9.08e-12 | 2 |
glomerular cell | 2.97e-07 | 7 |
kidney corpuscule cell | 2.97e-07 | 7 |