FFCP PHASE1:Mm9::chr7:57230598..57230710,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=338352 | |EntrezGene=338352 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=159 | |||
|TSSclassifier=NA | |||
|UniProt=D3YWD8 | |UniProt=D3YWD8 | ||
|association_with_transcript=0bp_to_ENSMUST00000107603_5end | |association_with_transcript=0bp_to_ENSMUST00000107603_5end | ||
|cluster_id=chr7:57230598..57230710,+ | |||
|description=CAGE_peak_1_at_Nell1_5end | |description=CAGE_peak_1_at_Nell1_5end | ||
|id=chr7:57230598..57230710,+ | |id=chr7:57230598..57230710,+ | ||
|ontology_enrichment_celltype=CL:0000117!2.71e-09!23;CL:0000337!2.71e-09!23;CL:0000540!1.97e-08!33;CL:0000047!1.97e-08!33;CL:0000031!1.97e-08!33;CL:0000404!1.97e-08!33;CL:0002319!5.46e-07!43;CL:0000221!6.17e-07!44;CL:0000133!6.17e-07!44 | |ontology_enrichment_celltype=CL:0000117!2.71e-09!23;CL:0000337!2.71e-09!23;CL:0000540!1.97e-08!33;CL:0000047!1.97e-08!33;CL:0000031!1.97e-08!33;CL:0000404!1.97e-08!33;CL:0002319!5.46e-07!43;CL:0000221!6.17e-07!44;CL:0000133!6.17e-07!44 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.26e-09,23;CL:0000337,6.26e-09,23;CL:0000540,2.12e-07,33;CL:0000047,2.12e-07,33;CL:0000031,2.12e-07,33;CL:0000404,2.12e-07,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.92e-23!73;UBERON:0005743!1.92e-23!73;UBERON:0000073!1.72e-22!75;UBERON:0001016!1.72e-22!75;UBERON:0002346!1.72e-22!71;UBERON:0003075!1.72e-22!71;UBERON:0007284!1.72e-22!71;UBERON:0001049!8.24e-22!52;UBERON:0005068!8.24e-22!52;UBERON:0006241!8.24e-22!52;UBERON:0007135!8.24e-22!52;UBERON:0000033!3.18e-21!63;UBERON:0000955!1.83e-20!50;UBERON:0006238!1.83e-20!50;UBERON:0004121!5.46e-20!102;UBERON:0000924!5.46e-20!102;UBERON:0006601!5.46e-20!102;UBERON:0002616!8.59e-20!49;UBERON:0003056!5.40e-18!49;UBERON:0003080!1.79e-16!40;UBERON:0002780!8.79e-16!39;UBERON:0001890!8.79e-16!39;UBERON:0006240!8.79e-16!39;UBERON:0002020!4.47e-13!34;UBERON:0002791!6.02e-10!29;UBERON:0003528!6.02e-10!29;UBERON:0001893!6.02e-10!29;UBERON:0007811!9.34e-10!86;UBERON:0000153!1.55e-09!94;UBERON:0000468!4.18e-09!333;UBERON:0001894!2.73e-07!10;UBERON:0006222!2.73e-07!10;UBERON:0002619!5.23e-07!17;UBERON:0000922!8.55e-07!328 | |ontology_enrichment_uberon=UBERON:0001017!1.92e-23!73;UBERON:0005743!1.92e-23!73;UBERON:0000073!1.72e-22!75;UBERON:0001016!1.72e-22!75;UBERON:0002346!1.72e-22!71;UBERON:0003075!1.72e-22!71;UBERON:0007284!1.72e-22!71;UBERON:0001049!8.24e-22!52;UBERON:0005068!8.24e-22!52;UBERON:0006241!8.24e-22!52;UBERON:0007135!8.24e-22!52;UBERON:0000033!3.18e-21!63;UBERON:0000955!1.83e-20!50;UBERON:0006238!1.83e-20!50;UBERON:0004121!5.46e-20!102;UBERON:0000924!5.46e-20!102;UBERON:0006601!5.46e-20!102;UBERON:0002616!8.59e-20!49;UBERON:0003056!5.40e-18!49;UBERON:0003080!1.79e-16!40;UBERON:0002780!8.79e-16!39;UBERON:0001890!8.79e-16!39;UBERON:0006240!8.79e-16!39;UBERON:0002020!4.47e-13!34;UBERON:0002791!6.02e-10!29;UBERON:0003528!6.02e-10!29;UBERON:0001893!6.02e-10!29;UBERON:0007811!9.34e-10!86;UBERON:0000153!1.55e-09!94;UBERON:0000468!4.18e-09!333;UBERON:0001894!2.73e-07!10;UBERON:0006222!2.73e-07!10;UBERON:0002619!5.23e-07!17;UBERON:0000922!8.55e-07!328 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.89e-26,64;UBERON:0003075,9.89e-26,64;UBERON:0007284,9.89e-26,64;UBERON:0000073,1.07e-24,54;UBERON:0001017,1.71e-23,73;UBERON:0001049,5.19e-23,52;UBERON:0005068,5.19e-23,52;UBERON:0006241,5.19e-23,52;UBERON:0007135,5.19e-23,52;UBERON:0010371,3.63e-22,73;UBERON:0001016,4.58e-22,75;UBERON:0004121,2.04e-19,95;UBERON:0000924,2.04e-19,95;UBERON:0006601,2.04e-19,95;UBERON:0000955,3.42e-19,47;UBERON:0006238,3.42e-19,47;UBERON:0003056,1.30e-18,49;UBERON:0002616,1.79e-18,46;UBERON:0003080,7.40e-17,40;UBERON:0002780,4.23e-16,39;UBERON:0001890,4.23e-16,39;UBERON:0006240,4.23e-16,39;UBERON:0002020,3.94e-13,34;UBERON:0010314,2.33e-12,92;UBERON:0003528,9.69e-10,29;UBERON:0002791,9.69e-10,29;UBERON:0001893,9.69e-10,29;UBERON:0001894,5.56e-08,10;UBERON:0006222,5.56e-08,10;UBERON:0002619,1.15e-07,17;UBERON:0003076,8.09e-07,12;UBERON:0003057,8.09e-07,12 | |||
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| ||
|short_description=p1@Nell1 | |short_description=p1@Nell1 | ||
}} | }} |
Latest revision as of 23:20, 26 September 2015
Short description: | p1@Nell1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nell1_5end |
Coexpression cluster: | MCL_coexpression_mm9:159 |
Association with transcript: | 0bp_to_ENSMUST00000107603_5end |
EntrezGene: | Nell1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.26e-09 | 23 |
neuroblast (sensu Vertebrata) | 6.26e-09 | 23 |
neuron | 2.12e-07 | 33 |
neuronal stem cell | 2.12e-07 | 33 |
neuroblast | 2.12e-07 | 33 |
electrically signaling cell | 2.12e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 9.89e-26 | 64 |
neural plate | 9.89e-26 | 64 |
presumptive neural plate | 9.89e-26 | 64 |
regional part of nervous system | 1.07e-24 | 54 |
central nervous system | 1.71e-23 | 73 |
neural tube | 5.19e-23 | 52 |
neural rod | 5.19e-23 | 52 |
future spinal cord | 5.19e-23 | 52 |
neural keel | 5.19e-23 | 52 |
ecto-epithelium | 3.63e-22 | 73 |
nervous system | 4.58e-22 | 75 |
ectoderm-derived structure | 2.04e-19 | 95 |
ectoderm | 2.04e-19 | 95 |
presumptive ectoderm | 2.04e-19 | 95 |
brain | 3.42e-19 | 47 |
future brain | 3.42e-19 | 47 |
pre-chordal neural plate | 1.30e-18 | 49 |
regional part of brain | 1.79e-18 | 46 |
anterior neural tube | 7.40e-17 | 40 |
regional part of forebrain | 4.23e-16 | 39 |
forebrain | 4.23e-16 | 39 |
future forebrain | 4.23e-16 | 39 |
gray matter | 3.94e-13 | 34 |
structure with developmental contribution from neural crest | 2.33e-12 | 92 |
brain grey matter | 9.69e-10 | 29 |
regional part of telencephalon | 9.69e-10 | 29 |
telencephalon | 9.69e-10 | 29 |
diencephalon | 5.56e-08 | 10 |
future diencephalon | 5.56e-08 | 10 |
regional part of cerebral cortex | 1.15e-07 | 17 |
posterior neural tube | 8.09e-07 | 12 |
chordal neural plate | 8.09e-07 | 12 |