FFCP PHASE1:Hg19::chr12:55413694..55413703,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=58158 | |EntrezGene=58158 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13802 | |HGNC=13802 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HD90,Q8IW56 | |UniProt=Q9HD90,Q8IW56 | ||
|association_with_transcript=-25bp_to_ENST00000242994,NM_021191,uc001sgp.3_5end | |association_with_transcript=-25bp_to_ENST00000242994,NM_021191,uc001sgp.3_5end | ||
|cluster_id=chr12:55413694..55413703,+ | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_2_at_NEUROD4_5end | |description=CAGE_peak_2_at_NEUROD4_5end | ||
|id=chr12:55413694..55413703,+ | |id=chr12:55413694..55413703,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3119!2.08e-09!14 | |ontology_enrichment_disease=DOID:3119!2.08e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:3119;4.00e-11;14!DOID:154;1.22e-09;2!DOID:4236;1.22e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,4.29e-11,14;DOID:154,1.12e-09,2;DOID:4236,1.12e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0003296!1.56e-33!4;UBERON:0010133!1.56e-33!4;UBERON:0001894!2.76e-19!7;UBERON:0006222!2.76e-19!7;UBERON:0001905!7.07e-18!2;UBERON:0002757!7.07e-18!2;UBERON:0010134!7.07e-18!2;UBERON:0002784!7.07e-18!2;UBERON:0005408!7.07e-18!2;UBERON:0001899!7.07e-18!2;UBERON:0000007!1.76e-17!2;UBERON:0000073!9.97e-12!94;UBERON:0001016!9.97e-12!94;UBERON:0003056!2.19e-11!61;UBERON:0003075!3.36e-11!86;UBERON:0007284!3.36e-11!86;UBERON:0005743!4.61e-11!86;UBERON:0002346!1.29e-10!90;UBERON:0001017!9.59e-10!82;UBERON:0002780!9.35e-09!41;UBERON:0001890!9.35e-09!41;UBERON:0006240!9.35e-09!41;UBERON:0003080!1.56e-08!42;UBERON:0001049!6.89e-08!57;UBERON:0005068!6.89e-08!57;UBERON:0006241!6.89e-08!57;UBERON:0007135!6.89e-08!57;UBERON:0000955!7.13e-08!69;UBERON:0006238!7.13e-08!69;UBERON:0002616!1.37e-07!59;UBERON:0000966!3.24e-07!5;UBERON:0005388!3.24e-07!5;UBERON:0001802!3.24e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0003296;1.59e-66;4!UBERON:0010133;1.59e-66;4!UBERON:0001894;2.80e-38;7!UBERON:0001905;1.11e-34;2!UBERON:0002757;1.11e-34;2!UBERON:0010134;1.11e-34;2!UBERON:0005408;1.11e-34;2!UBERON:0001899;1.11e-34;2!UBERON:0000007;9.92e-34;2!UBERON:0002784;6.79e-18;4!UBERON:0002360;1.71e-09;2!UBERON:0000094;1.71e-09;2!UBERON:0010743;1.71e-09;2!UBERON:0002368;2.10e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,1.13e-66,4;UBERON:0010133,1.13e-66,4;UBERON:0001894,2.31e-38,7;UBERON:0006222,2.31e-38,7;UBERON:0001905,1.11e-34,2;UBERON:0002757,1.11e-34,2;UBERON:0010134,1.11e-34,2;UBERON:0005408,1.11e-34,2;UBERON:0001899,1.11e-34,2;UBERON:0000007,7.10e-34,2;UBERON:0002784,6.79e-18,4;UBERON:0002360,1.71e-09,2;UBERON:0000094,1.71e-09,2;UBERON:0010743,1.71e-09,2;UBERON:0002368,5.87e-08,35 | |||
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|short_description=p2@NEUROD4 | |short_description=p2@NEUROD4 | ||
}} | }} |
Latest revision as of 07:24, 19 September 2015
Short description: | p2@NEUROD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NEUROD4_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -25bp_to_ENST00000242994, NM_021191, uc001sgp.3_5end |
EntrezGene: | NEUROD4 |
HGNC: | 13802 |
UniProt: | Q9HD90Q8IW56 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 1.13e-66 | 4 |
neuroendocrine gland | 1.13e-66 | 4 |
diencephalon | 2.31e-38 | 7 |
future diencephalon | 2.31e-38 | 7 |
pineal body | 1.11e-34 | 2 |
regional part of epithalamus | 1.11e-34 | 2 |
secretory circumventricular organ | 1.11e-34 | 2 |
circumventricular organ | 1.11e-34 | 2 |
epithalamus | 1.11e-34 | 2 |
pituitary gland | 7.10e-34 | 2 |
regional part of diencephalon | 6.79e-18 | 4 |
meninx | 1.71e-09 | 2 |
membrane organ | 1.71e-09 | 2 |
meningeal cluster | 1.71e-09 | 2 |
endocrine gland | 5.87e-08 | 35 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 4.29e-11 | 14 |
mixed cell type cancer | 1.12e-09 | 2 |
carcinosarcoma | 1.12e-09 | 2 |