FFCP PHASE1:Hg19::chr19:11071685..11071798,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6597 | |EntrezGene=6597 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11100 | |HGNC=11100 | ||
|TSSclassifier=strong | |||
|UniProt=P51532 | |UniProt=P51532 | ||
|association_with_transcript=8bp_to_ENST00000344626_5end | |association_with_transcript=8bp_to_ENST00000344626_5end | ||
|cluster_id=chr19:11071685..11071798,+ | |||
|description=CAGE_peak_1_at_SMARCA4_5end | |description=CAGE_peak_1_at_SMARCA4_5end | ||
|id=chr19:11071685..11071798,+ | |id=chr19:11071685..11071798,+ | ||
|ontology_enrichment_celltype=CL:0002321!4.95e-18!248;CL:0000220!2.44e-17!246;CL:0000066!2.00e-12!254;CL:0000221!1.67e-10!71;CL:0000133!1.87e-10!59;CL:0002319!4.17e-10!25;CL:0000333!5.46e-09!41;CL:0002078!2.00e-08!44;CL:0000055!2.88e-08!180;CL:0000115!2.97e-08!35;CL:0000222!7.76e-08!119;CL:0002139!2.63e-07!24;CL:0000071!3.93e-07!18;CL:0002546!3.93e-07!18;CL:1000449!7.09e-07!16 | |ontology_enrichment_celltype=CL:0002321!4.95e-18!248;CL:0000220!2.44e-17!246;CL:0000066!2.00e-12!254;CL:0000221!1.67e-10!71;CL:0000133!1.87e-10!59;CL:0002319!4.17e-10!25;CL:0000333!5.46e-09!41;CL:0002078!2.00e-08!44;CL:0000055!2.88e-08!180;CL:0000115!2.97e-08!35;CL:0000222!7.76e-08!119;CL:0002139!2.63e-07!24;CL:0000071!3.93e-07!18;CL:0002546!3.93e-07!18;CL:1000449!7.09e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0002319;4.07e-10;25!CL:0000115;2.29e-07;36!CL:1000449;2.74e-07;15!CL:0002139;2.75e-07;24!CL:0000071;4.12e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.94e-18,250;CL:0000066,1.76e-12,253;CL:0000133,1.87e-10,59;CL:0002319,4.17e-10,25;CL:0000221,6.77e-10,72;CL:0000333,5.46e-09,41;CL:0002078,9.61e-09,45;CL:0000115,1.39e-08,36;CL:0000222,5.32e-08,121;CL:0002139,2.63e-07,24;CL:1000449,2.69e-07,15;CL:0000071,3.93e-07,18;CL:0002546,3.93e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;4.12e-07;18 | |||
|ontology_enrichment_disease_v019=DOID:8692;7.00e-11;31!DOID:1240;9.19e-11;39!DOID:2531;3.38e-09;51!DOID:0060083;3.38e-09;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.35e-14,235;DOID:2531,1.52e-14,51;DOID:0060083,1.52e-14,51;DOID:14566,3.58e-14,239;DOID:1240,1.98e-13,39;DOID:8692,3.50e-11,31;DOID:0050686,1.60e-10,137 | |||
|ontology_enrichment_uberon=UBERON:0000119!3.78e-11!312;UBERON:0000483!1.88e-10!309;UBERON:0002049!6.27e-08!79;UBERON:0007798!6.27e-08!79;UBERON:0001986!3.93e-07!18;UBERON:0004638!3.93e-07!18;UBERON:0004852!3.93e-07!18;UBERON:0000487!4.43e-07!22;UBERON:0004211!7.09e-07!16;UBERON:0001285!7.09e-07!16;UBERON:0007684!7.09e-07!16;UBERON:0003220!7.09e-07!16;UBERON:0004208!7.09e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0000490;5.69e-08;33!UBERON:0006554;5.91e-08;30!UBERON:0001008;5.91e-08;30!UBERON:0002113;1.86e-07;24!UBERON:0011143;1.86e-07;24!UBERON:0006555;2.74e-07;15!UBERON:0004819;2.74e-07;15!UBERON:0001285;2.74e-07;15!UBERON:0007684;2.74e-07;15!UBERON:0004638;4.12e-07;18!UBERON:0001986;4.12e-07;18!UBERON:0004852;4.12e-07;18!UBERON:0000487;4.49e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,3.31e-11,309;UBERON:0000483,1.65e-10,306;UBERON:0002049,5.22e-08,78;UBERON:0007798,5.22e-08,78;UBERON:0004211,2.69e-07,15;UBERON:0009773,2.69e-07,15;UBERON:0001231,2.69e-07,15;UBERON:0001285,2.69e-07,15;UBERON:0007684,2.69e-07,15;UBERON:0004208,2.69e-07,15;UBERON:0004638,3.93e-07,18;UBERON:0001986,3.93e-07,18;UBERON:0004852,3.93e-07,18;UBERON:0000487,4.43e-07,22 | |||
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| ||
|short_description=p1@SMARCA4 | |short_description=p1@SMARCA4 | ||
}} | }} |
Latest revision as of 03:59, 25 September 2015
Short description: | p1@SMARCA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMARCA4_5end |
Coexpression cluster: | NA |
Association with transcript: | 8bp_to_ENST00000344626_5end |
EntrezGene: | SMARCA4 |
HGNC: | 11100 |
UniProt: | P51532 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.94e-18 | 250 |
epithelial cell | 1.76e-12 | 253 |
neurectodermal cell | 1.87e-10 | 59 |
neural cell | 4.17e-10 | 25 |
ectodermal cell | 6.77e-10 | 72 |
migratory neural crest cell | 5.46e-09 | 41 |
meso-epithelial cell | 9.61e-09 | 45 |
endothelial cell | 1.39e-08 | 36 |
mesodermal cell | 5.32e-08 | 121 |
endothelial cell of vascular tree | 2.63e-07 | 24 |
epithelial cell of nephron | 2.69e-07 | 15 |
blood vessel endothelial cell | 3.93e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.93e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
cell layer | 3.31e-11 | 309 |
epithelium | 1.65e-10 | 306 |
vasculature | 5.22e-08 | 78 |
vascular system | 5.22e-08 | 78 |
nephron epithelium | 2.69e-07 | 15 |
renal tubule | 2.69e-07 | 15 |
nephron tubule | 2.69e-07 | 15 |
nephron | 2.69e-07 | 15 |
uriniferous tubule | 2.69e-07 | 15 |
nephrogenic mesenchyme | 2.69e-07 | 15 |
blood vessel endothelium | 3.93e-07 | 18 |
endothelium | 3.93e-07 | 18 |
cardiovascular system endothelium | 3.93e-07 | 18 |
simple squamous epithelium | 4.43e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.35e-14 | 235 |
hematologic cancer | 1.52e-14 | 51 |
immune system cancer | 1.52e-14 | 51 |
disease of cellular proliferation | 3.58e-14 | 239 |
leukemia | 1.98e-13 | 39 |
myeloid leukemia | 3.50e-11 | 31 |
organ system cancer | 1.60e-10 | 137 |