FFCP PHASE1:Hg19::chr13:76210448..76210494,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4008 | |EntrezGene=4008 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6646 | |HGNC=6646 | ||
|TSSclassifier=strong | |||
|UniProt=E9PMP7 | |UniProt=E9PMP7 | ||
|association_with_transcript=0bp_to_ENST00000377499,uc001vjt.1_5end | |association_with_transcript=0bp_to_ENST00000377499,uc001vjt.1_5end | ||
|cluster_id=chr13:76210448..76210494,+ | |||
|coexpression_cluster_id=C1189 | |||
|description=CAGE_peak_1_at_LMO7_5end | |description=CAGE_peak_1_at_LMO7_5end | ||
|id=chr13:76210448..76210494,+ | |id=chr13:76210448..76210494,+ | ||
|ontology_enrichment_celltype=CL:0000055!5.74e-46!180;CL:0000057!1.94e-25!75;CL:0000680!2.57e-14!57;CL:0000056!2.57e-14!57;CL:0000355!2.57e-14!57;CL:0000192!6.65e-13!42;CL:0000514!6.65e-13!42;CL:0000187!8.29e-13!54;CL:0000183!5.82e-12!59;CL:0000359!1.45e-11!32;CL:0000222!2.02e-11!119;CL:0000393!4.51e-11!60;CL:0000211!4.51e-11!60;CL:0002620!4.66e-11!23;CL:0000548!5.50e-11!679;CL:0000004!5.50e-11!679;CL:0000255!5.50e-11!679;CL:0000144!2.56e-10!625;CL:0000012!3.58e-10!682;CL:0002371!1.90e-08!591;CL:0002334!1.24e-07!12;CL:0000048!4.09e-07!430;CL:0000220!4.70e-07!246;CL:0000723!8.96e-07!436;CL:0002321!9.03e-07!248 | |ontology_enrichment_celltype=CL:0000055!5.74e-46!180;CL:0000057!1.94e-25!75;CL:0000680!2.57e-14!57;CL:0000056!2.57e-14!57;CL:0000355!2.57e-14!57;CL:0000192!6.65e-13!42;CL:0000514!6.65e-13!42;CL:0000187!8.29e-13!54;CL:0000183!5.82e-12!59;CL:0000359!1.45e-11!32;CL:0000222!2.02e-11!119;CL:0000393!4.51e-11!60;CL:0000211!4.51e-11!60;CL:0002620!4.66e-11!23;CL:0000548!5.50e-11!679;CL:0000004!5.50e-11!679;CL:0000255!5.50e-11!679;CL:0000144!2.56e-10!625;CL:0000012!3.58e-10!682;CL:0002371!1.90e-08!591;CL:0002334!1.24e-07!12;CL:0000048!4.09e-07!430;CL:0000220!4.70e-07!246;CL:0000723!8.96e-07!436;CL:0002321!9.03e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0002620;3.59e-11;23!CL:0000359;4.09e-11;32!CL:0000057;2.09e-10;73!CL:0000192;1.27e-09;43!CL:0002320;6.29e-08;188!CL:0002334;9.38e-08;12!CL:0000187;2.12e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.04e-26,76;CL:0000680,2.37e-14,58;CL:0000056,2.37e-14,58;CL:0000355,2.37e-14,58;CL:0000192,7.16e-13,43;CL:0000514,7.16e-13,43;CL:0000187,7.87e-13,55;CL:0000359,9.86e-12,32;CL:0002620,3.22e-11,23;CL:0000393,5.69e-11,61;CL:0000211,5.69e-11,61;CL:0000222,9.06e-11,121;CL:0000048,8.23e-08,427;CL:0002334,9.79e-08,12;CL:0000723,1.72e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000514;1.27e-09;43!CL:0000355;1.02e-07;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.03e-16!83;UBERON:0002329!1.03e-16!83;UBERON:0003077!1.03e-16!83;UBERON:0003059!1.03e-16!83;UBERON:0007282!1.03e-16!83;UBERON:0009618!1.03e-16!83;UBERON:0007285!1.03e-16!83;UBERON:0004290!2.03e-14!70;UBERON:0005256!3.52e-13!143;UBERON:0001134!2.02e-12!61;UBERON:0002036!2.02e-12!61;UBERON:0003082!2.02e-12!61;UBERON:0000486!2.46e-12!82;UBERON:0002385!2.24e-11!63;UBERON:0001015!2.24e-11!63;UBERON:0000383!2.24e-11!63;UBERON:0002100!8.19e-11!216;UBERON:0003102!3.17e-09!95;UBERON:0002199!7.02e-09!45;UBERON:0002416!7.02e-09!45;UBERON:0001637!7.02e-09!42;UBERON:0003509!7.02e-09!42;UBERON:0004572!7.02e-09!42;UBERON:0000490!1.12e-08!138;UBERON:0004573!1.84e-08!33;UBERON:0004571!1.84e-08!33;UBERON:0002097!3.54e-08!40;UBERON:0000475!4.41e-08!365;UBERON:0004872!5.96e-08!84;UBERON:0003104!6.06e-08!238;UBERON:0009142!6.06e-08!238;UBERON:0002049!9.15e-08!79;UBERON:0007798!9.15e-08!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.21e-07;33!UBERON:0004571;1.21e-07;33!UBERON:0002384;1.39e-07;198!UBERON:0002097;8.05e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.89e-14,71;UBERON:0003059,1.89e-14,71;UBERON:0007282,1.89e-14,71;UBERON:0004290,1.89e-14,71;UBERON:0009618,1.89e-14,71;UBERON:0007524,3.34e-14,73;UBERON:0007503,4.59e-14,78;UBERON:0003077,9.10e-14,72;UBERON:0007285,9.10e-14,72;UBERON:0000486,1.42e-12,83;UBERON:0001134,2.01e-12,62;UBERON:0002036,2.01e-12,62;UBERON:0003082,2.01e-12,62;UBERON:0003104,3.44e-12,160;UBERON:0009142,3.44e-12,160;UBERON:0005256,1.76e-11,122;UBERON:0002385,2.48e-11,64;UBERON:0001015,2.48e-11,64;UBERON:0000383,2.48e-11,64;UBERON:0000490,1.76e-10,148;UBERON:0003102,1.07e-09,99;UBERON:0002199,1.62e-09,46;UBERON:0002416,1.62e-09,46;UBERON:0002100,4.37e-09,199;UBERON:0001637,5.06e-09,42;UBERON:0003509,5.06e-09,42;UBERON:0004572,5.06e-09,42;UBERON:0002097,8.36e-09,41;UBERON:0004573,1.41e-08,33;UBERON:0004571,1.41e-08,33;UBERON:0002049,2.06e-07,78;UBERON:0007798,2.06e-07,78;UBERON:0004872,2.16e-07,83 | |||
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| ||
|short_description=p1@LMO7 | |short_description=p1@LMO7 | ||
}} | }} |
Latest revision as of 23:58, 17 September 2015
Short description: | p1@LMO7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LMO7_5end |
Coexpression cluster: | C1189_Preadipocyte_Fibroblast_Ewing_mesodermal_Adipocyte_Smooth_osteoclastoma |
Association with transcript: | 0bp_to_ENST00000377499, uc001vjt.1_5end |
EntrezGene: | LMO7 |
HGNC: | 6646 |
UniProt: | E9PMP7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.04e-26 | 76 |
muscle precursor cell | 2.37e-14 | 58 |
myoblast | 2.37e-14 | 58 |
multi-potent skeletal muscle stem cell | 2.37e-14 | 58 |
smooth muscle cell | 7.16e-13 | 43 |
smooth muscle myoblast | 7.16e-13 | 43 |
muscle cell | 7.87e-13 | 55 |
vascular associated smooth muscle cell | 9.86e-12 | 32 |
skin fibroblast | 3.22e-11 | 23 |
electrically responsive cell | 5.69e-11 | 61 |
electrically active cell | 5.69e-11 | 61 |
mesodermal cell | 9.06e-11 | 121 |
multi fate stem cell | 8.23e-08 | 427 |
preadipocyte | 9.79e-08 | 12 |
somatic stem cell | 1.72e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
somite | 1.89e-14 | 71 |
presomitic mesoderm | 1.89e-14 | 71 |
presumptive segmental plate | 1.89e-14 | 71 |
dermomyotome | 1.89e-14 | 71 |
trunk paraxial mesoderm | 1.89e-14 | 71 |
dense mesenchyme tissue | 3.34e-14 | 73 |
epithelial vesicle | 4.59e-14 | 78 |
paraxial mesoderm | 9.10e-14 | 72 |
presumptive paraxial mesoderm | 9.10e-14 | 72 |
multilaminar epithelium | 1.42e-12 | 83 |
skeletal muscle tissue | 2.01e-12 | 62 |
striated muscle tissue | 2.01e-12 | 62 |
myotome | 2.01e-12 | 62 |
mesenchyme | 3.44e-12 | 160 |
entire embryonic mesenchyme | 3.44e-12 | 160 |
trunk mesenchyme | 1.76e-11 | 122 |
muscle tissue | 2.48e-11 | 64 |
musculature | 2.48e-11 | 64 |
musculature of body | 2.48e-11 | 64 |
unilaminar epithelium | 1.76e-10 | 148 |
surface structure | 1.07e-09 | 99 |
integument | 1.62e-09 | 46 |
integumental system | 1.62e-09 | 46 |
trunk | 4.37e-09 | 199 |
artery | 5.06e-09 | 42 |
arterial blood vessel | 5.06e-09 | 42 |
arterial system | 5.06e-09 | 42 |
skin of body | 8.36e-09 | 41 |
systemic artery | 1.41e-08 | 33 |
systemic arterial system | 1.41e-08 | 33 |
vasculature | 2.06e-07 | 78 |
vascular system | 2.06e-07 | 78 |
splanchnic layer of lateral plate mesoderm | 2.16e-07 | 83 |