FFCP PHASE1:Hg19::chr11:27494309..27494328,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:27494309..27494328,-
|short_description=p2@LGR4
|description=CAGE_peak_2_at_LGR4_5end
|association_with_transcript=0bp_to_ENST00000389858_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55366 | |EntrezGene=55366 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13299 | |HGNC=13299 | ||
|TSSclassifier=strong | |||
|UniProt=G5E9B3 | |UniProt=G5E9B3 | ||
|association_with_transcript=0bp_to_ENST00000389858_5end | |||
|cluster_id=chr11:27494309..27494328,- | |||
|coexpression_cluster_id=C2125 | |||
|description=CAGE_peak_2_at_LGR4_5end | |||
|id=chr11:27494309..27494328,- | |||
|ontology_enrichment_celltype=CL:0000066!2.23e-10!254;CL:0000223!2.09e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.80e-09,253;CL:0000223,1.93e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0003104;9.46e-09;31 | |||
|ontology_enrichment_disease=DOID:0050687!7.45e-14!143;DOID:305!7.72e-13!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.96e-12,106;DOID:0050687,3.24e-11,143 | |||
|ontology_enrichment_uberon=UBERON:0000062!1.43e-17!511;UBERON:0000468!2.16e-14!659;UBERON:0000481!9.95e-13!347;UBERON:0001048!1.00e-11!168;UBERON:0000922!1.22e-11!612;UBERON:0000467!1.05e-10!625;UBERON:0000480!1.33e-10!626;UBERON:0001007!1.45e-09!155;UBERON:0001555!1.45e-09!155;UBERON:0007026!1.45e-09!155;UBERON:0002050!2.07e-09!605;UBERON:0005423!2.07e-09!605;UBERON:0000923!3.04e-09!604;UBERON:0005291!3.04e-09!604;UBERON:0006598!3.04e-09!604;UBERON:0002532!3.04e-09!604;UBERON:0004119!4.07e-09!169;UBERON:0000925!4.07e-09!169;UBERON:0006595!4.07e-09!169;UBERON:0000475!6.28e-08!365;UBERON:0004921!1.18e-07!129;UBERON:0004185!1.18e-07!129;UBERON:0003103!1.76e-07!69;UBERON:0000064!2.11e-07!219;UBERON:0000466!5.71e-07!126 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001048,1.57e-10,160;UBERON:0001007,5.62e-09,145;UBERON:0001555,5.62e-09,145;UBERON:0007026,5.62e-09,145;UBERON:0007023,2.57e-08,114;UBERON:0004119,2.66e-08,160;UBERON:0000925,2.66e-08,160;UBERON:0006595,2.66e-08,160;UBERON:0011216,9.68e-08,223;UBERON:0004921,1.57e-07,118;UBERON:0003103,1.59e-07,68;UBERON:0000922,1.90e-07,592 | |||
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| ||
|short_description=p2@LGR4 | |||
}} | }} |
Latest revision as of 12:10, 17 September 2015
Short description: | p2@LGR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LGR4_5end |
Coexpression cluster: | C2125_gastric_signet_Lens_Ciliary_lung_Hepatocyte_kidney |
Association with transcript: | 0bp_to_ENST00000389858_5end |
EntrezGene: | LGR4 |
HGNC: | 13299 |
UniProt: | G5E9B3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.80e-09 | 253 |
endodermal cell | 1.93e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
primordium | 1.57e-10 | 160 |
digestive system | 5.62e-09 | 145 |
digestive tract | 5.62e-09 | 145 |
primitive gut | 5.62e-09 | 145 |
adult organism | 2.57e-08 | 114 |
endoderm-derived structure | 2.66e-08 | 160 |
endoderm | 2.66e-08 | 160 |
presumptive endoderm | 2.66e-08 | 160 |
organ system subdivision | 9.68e-08 | 223 |
subdivision of digestive tract | 1.57e-07 | 118 |
compound organ | 1.59e-07 | 68 |
embryo | 1.90e-07 | 592 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.96e-12 | 106 |
cell type cancer | 3.24e-11 | 143 |