FFCP PHASE1:Hg19::chr1:203830703..203830740,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6635 | |EntrezGene=6635 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11161 | |HGNC=11161 | ||
|TSSclassifier=strong | |||
|UniProt=P62304 | |UniProt=P62304 | ||
|association_with_transcript=0bp_to_ENST00000470492,ENST00000475035,ENST00000483099,NM_003094,uc001hai.2,uc010pqn.1_5end | |association_with_transcript=0bp_to_ENST00000470492,ENST00000475035,ENST00000483099,NM_003094,uc001hai.2,uc010pqn.1_5end | ||
|cluster_id=chr1:203830703..203830740,+ | |||
|description=CAGE_peak_1_at_SNRPE_5end | |description=CAGE_peak_1_at_SNRPE_5end | ||
|id=chr1:203830703..203830740,+ | |id=chr1:203830703..203830740,+ | ||
|ontology_enrichment_celltype=CL:0000012!1.09e-22!682;CL:0000003!4.01e-21!722;CL:0000548!8.72e-21!679;CL:0000004!8.72e-21!679;CL:0000255!8.72e-21!679;CL:0000144!1.31e-11!625;CL:0000063!1.38e-09!578;CL:0000988!1.06e-08!182;CL:0000542!2.79e-08!53;CL:0000051!2.79e-08!53;CL:0000838!7.65e-08!52;CL:0000037!8.04e-08!172;CL:0000566!8.04e-08!172;CL:0000219!9.35e-08!390;CL:0002032!2.63e-07!165;CL:0000837!2.63e-07!165;CL:0000945!3.75e-07!24;CL:0000826!3.75e-07!24;CL:0002371!4.90e-07!591;CL:0000034!5.51e-07!444 | |ontology_enrichment_celltype=CL:0000012!1.09e-22!682;CL:0000003!4.01e-21!722;CL:0000548!8.72e-21!679;CL:0000004!8.72e-21!679;CL:0000255!8.72e-21!679;CL:0000144!1.31e-11!625;CL:0000063!1.38e-09!578;CL:0000988!1.06e-08!182;CL:0000542!2.79e-08!53;CL:0000051!2.79e-08!53;CL:0000838!7.65e-08!52;CL:0000037!8.04e-08!172;CL:0000566!8.04e-08!172;CL:0000219!9.35e-08!390;CL:0002032!2.63e-07!165;CL:0000837!2.63e-07!165;CL:0000945!3.75e-07!24;CL:0000826!3.75e-07!24;CL:0002371!4.90e-07!591;CL:0000034!5.51e-07!444 | ||
|ontology_enrichment_celltype_v019=CL:0000945;3.40e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.52e-08,177;CL:0000542,2.79e-08,53;CL:0000051,2.79e-08,53;CL:0000838,7.65e-08,52;CL:0000037,1.38e-07,168;CL:0000219,3.14e-07,386;CL:0000945,3.75e-07,24;CL:0000826,3.75e-07,24;CL:0002032,4.45e-07,161;CL:0000837,4.45e-07,161 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!9.75e-28!235;DOID:14566!2.14e-27!239;DOID:2531!2.51e-18!51;DOID:0060083!2.51e-18!51;DOID:0050686!7.56e-18!137;DOID:1240!1.12e-15!39;DOID:8692!2.10e-13!31;DOID:0050687!4.01e-10!143;DOID:305!3.26e-08!106;DOID:3095!3.62e-07!22;DOID:2994!3.62e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:8692;6.94e-13;31!DOID:1240;1.50e-12;39!DOID:2531;3.58e-11;51!DOID:0060083;3.58e-11;51!DOID:3095;3.58e-07;22!DOID:2994;3.58e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:162,9.75e-28,235;DOID:14566,2.14e-27,239;DOID:2531,2.51e-18,51;DOID:0060083,2.51e-18,51;DOID:0050686,7.56e-18,137;DOID:1240,1.12e-15,39;DOID:8692,2.10e-13,31;DOID:0050687,4.01e-10,143;DOID:305,3.26e-08,106;DOID:3095,3.62e-07,22;DOID:2994,3.62e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.69e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.68e-07;9!UBERON:0001557;2.68e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.69e-07,9 | |||
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| ||
|short_description=p1@SNRPE | |short_description=p1@SNRPE | ||
}} | }} |
Latest revision as of 00:02, 20 September 2015
Short description: | p1@SNRPE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNRPE_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000470492, ENST00000475035, ENST00000483099, NM_003094, uc001hai.2, uc010pqn.1_5end |
EntrezGene: | SNRPE |
HGNC: | 11161 |
UniProt: | P62304 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.52e-08 | 177 |
lymphocyte | 2.79e-08 | 53 |
common lymphoid progenitor | 2.79e-08 | 53 |
lymphoid lineage restricted progenitor cell | 7.65e-08 | 52 |
hematopoietic stem cell | 1.38e-07 | 168 |
motile cell | 3.14e-07 | 386 |
lymphocyte of B lineage | 3.75e-07 | 24 |
pro-B cell | 3.75e-07 | 24 |
hematopoietic oligopotent progenitor cell | 4.45e-07 | 161 |
hematopoietic multipotent progenitor cell | 4.45e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.69e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cancer | 9.75e-28 | 235 |
disease of cellular proliferation | 2.14e-27 | 239 |
hematologic cancer | 2.51e-18 | 51 |
immune system cancer | 2.51e-18 | 51 |
organ system cancer | 7.56e-18 | 137 |
leukemia | 1.12e-15 | 39 |
myeloid leukemia | 2.10e-13 | 31 |
cell type cancer | 4.01e-10 | 143 |
carcinoma | 3.26e-08 | 106 |
germ cell and embryonal cancer | 3.62e-07 | 22 |
germ cell cancer | 3.62e-07 | 22 |