FFCP PHASE1:Hg19::chr16:2802316..2802364,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23524 | |EntrezGene=23524 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16639 | |HGNC=16639 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UQ35,F5GWZ7 | |UniProt=Q9UQ35,F5GWZ7 | ||
|association_with_transcript=0bp_to_ENST00000301740,ENST00000382301,ENST00000396975,ENST00000544933,NM_016333,uc002crj.1,uc002crk.2_5end | |association_with_transcript=0bp_to_ENST00000301740,ENST00000382301,ENST00000396975,ENST00000544933,NM_016333,uc002crj.1,uc002crk.2_5end | ||
|cluster_id=chr16:2802316..2802364,+ | |||
|description=CAGE_peak_2_at_SRRM2_5end | |description=CAGE_peak_2_at_SRRM2_5end | ||
|id=chr16:2802316..2802364,+ | |id=chr16:2802316..2802364,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.03e-09!57;UBERON:0005068!1.03e-09!57;UBERON:0006241!1.03e-09!57;UBERON:0007135!1.03e-09!57;UBERON:0005743!1.14e-09!86;UBERON:0000073!1.41e-09!94;UBERON:0001016!1.41e-09!94;UBERON:0002780!3.11e-09!41;UBERON:0001890!3.11e-09!41;UBERON:0006240!3.11e-09!41;UBERON:0001017!3.29e-09!82;UBERON:0003080!1.19e-08!42;UBERON:0000955!1.34e-08!69;UBERON:0006238!1.34e-08!69;UBERON:0002346!3.31e-08!90;UBERON:0007023!3.48e-08!115;UBERON:0001893!1.08e-07!34;UBERON:0002616!1.33e-07!59;UBERON:0002791!2.45e-07!33;UBERON:0002020!2.56e-07!34;UBERON:0003528!2.56e-07!34;UBERON:0003075!3.59e-07!86;UBERON:0007284!3.59e-07!86;UBERON:0001869!5.55e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;8.94e-07;41!UBERON:0001890;8.94e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.45e-10,56;UBERON:0005068,3.45e-10,56;UBERON:0006241,3.45e-10,56;UBERON:0007135,3.45e-10,56;UBERON:0001017,1.35e-09,81;UBERON:0000073,1.54e-09,53;UBERON:0002616,1.54e-09,53;UBERON:0001016,1.77e-09,89;UBERON:0002780,3.52e-09,41;UBERON:0001890,3.52e-09,41;UBERON:0003080,3.52e-09,41;UBERON:0006240,3.52e-09,41;UBERON:0000955,5.24e-09,68;UBERON:0006238,5.24e-09,68;UBERON:0002346,1.47e-08,86;UBERON:0007023,3.88e-08,114;UBERON:0001893,1.22e-07,34;UBERON:0010371,1.65e-07,104;UBERON:0003075,1.72e-07,82;UBERON:0007284,1.72e-07,82;UBERON:0003528,2.89e-07,34;UBERON:0002020,2.89e-07,34;UBERON:0002791,5.56e-07,32;UBERON:0001869,6.26e-07,32 | |||
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| ||
|short_description=p2@SRRM2 | |short_description=p2@SRRM2 | ||
}} | }} |
Latest revision as of 22:34, 15 September 2015
Short description: | p2@SRRM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SRRM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000301740, ENST00000382301, ENST00000396975, ENST00000544933, NM_016333, uc002crj.1, uc002crk.2_5end |
EntrezGene: | SRRM2 |
HGNC: | 16639 |
UniProt: | Q9UQ35F5GWZ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 3.45e-10 | 56 |
neural rod | 3.45e-10 | 56 |
future spinal cord | 3.45e-10 | 56 |
neural keel | 3.45e-10 | 56 |
central nervous system | 1.35e-09 | 81 |
regional part of nervous system | 1.54e-09 | 53 |
regional part of brain | 1.54e-09 | 53 |
nervous system | 1.77e-09 | 89 |
regional part of forebrain | 3.52e-09 | 41 |
forebrain | 3.52e-09 | 41 |
anterior neural tube | 3.52e-09 | 41 |
future forebrain | 3.52e-09 | 41 |
brain | 5.24e-09 | 68 |
future brain | 5.24e-09 | 68 |
neurectoderm | 1.47e-08 | 86 |
adult organism | 3.88e-08 | 114 |
telencephalon | 1.22e-07 | 34 |
ecto-epithelium | 1.65e-07 | 104 |
neural plate | 1.72e-07 | 82 |
presumptive neural plate | 1.72e-07 | 82 |
brain grey matter | 2.89e-07 | 34 |
gray matter | 2.89e-07 | 34 |
regional part of telencephalon | 5.56e-07 | 32 |
cerebral hemisphere | 6.26e-07 | 32 |