FFCP PHASE1:Hg19::chr16:2802623..2802721,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23524 | |EntrezGene=23524 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16639 | |HGNC=16639 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000426305,uc002crl.1,uc010bsu.1_5end | |association_with_transcript=0bp_to_ENST00000426305,uc002crl.1,uc010bsu.1_5end | ||
|cluster_id=chr16:2802623..2802721,+ | |||
|coexpression_cluster_id=C3547 | |||
|description=CAGE_peak_1_at_SRRM2_5end | |description=CAGE_peak_1_at_SRRM2_5end | ||
|id=chr16:2802623..2802721,+ | |id=chr16:2802623..2802721,+ | ||
|ontology_enrichment_celltype=CL:0000037!8.90e-17!172;CL:0000566!8.90e-17!172;CL:0000988!7.70e-16!182;CL:0002032!2.13e-15!165;CL:0000837!2.13e-15!165;CL:0000738!7.04e-15!140;CL:0000763!8.51e-13!112;CL:0000049!8.51e-13!112;CL:0002057!5.00e-10!42;CL:0000766!7.60e-10!76;CL:0002031!2.25e-09!124;CL:0000860!6.27e-09!45;CL:0002087!7.73e-09!119;CL:0000557!1.29e-07!71 | |ontology_enrichment_celltype=CL:0000037!8.90e-17!172;CL:0000566!8.90e-17!172;CL:0000988!7.70e-16!182;CL:0002032!2.13e-15!165;CL:0000837!2.13e-15!165;CL:0000738!7.04e-15!140;CL:0000763!8.51e-13!112;CL:0000049!8.51e-13!112;CL:0002057!5.00e-10!42;CL:0000766!7.60e-10!76;CL:0002031!2.25e-09!124;CL:0000860!6.27e-09!45;CL:0002087!7.73e-09!119;CL:0000557!1.29e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.44e-10;33!CL:0002057;2.44e-10;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.73e-17,168;CL:0000988,7.10e-17,177;CL:0002032,4.36e-16,161;CL:0000837,4.36e-16,161;CL:0000738,1.22e-15,136;CL:0000763,1.33e-13,108;CL:0000049,1.33e-13,108;CL:0000766,9.98e-11,72;CL:0000860,5.00e-10,42;CL:0002057,5.00e-10,42;CL:0002031,5.93e-10,120;CL:0002087,2.08e-09,115;CL:0000557,2.32e-08,67;CL:0000839,2.92e-07,66;CL:0000473,9.32e-07,48;CL:0000234,9.32e-07,48;CL:0002009,9.51e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;1.03e-07;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.42e-22!115;UBERON:0001049!7.10e-11!57;UBERON:0005068!7.10e-11!57;UBERON:0006241!7.10e-11!57;UBERON:0007135!7.10e-11!57;UBERON:0002390!3.77e-09!102;UBERON:0003061!3.77e-09!102;UBERON:0002346!4.73e-09!90;UBERON:0003075!1.18e-08!86;UBERON:0007284!1.18e-08!86;UBERON:0002616!1.21e-08!59;UBERON:0000955!2.09e-08!69;UBERON:0006238!2.09e-08!69;UBERON:0002780!2.22e-08!41;UBERON:0001890!2.22e-08!41;UBERON:0006240!2.22e-08!41;UBERON:0003080!2.44e-08!42;UBERON:0002193!1.38e-07!112;UBERON:0001017!3.29e-07!82;UBERON:0000073!4.56e-07!94;UBERON:0001016!4.56e-07!94 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.05e-22,114;UBERON:0001049,6.48e-11,56;UBERON:0005068,6.48e-11,56;UBERON:0006241,6.48e-11,56;UBERON:0007135,6.48e-11,56;UBERON:0000073,1.46e-10,53;UBERON:0002616,1.46e-10,53;UBERON:0002390,8.27e-10,98;UBERON:0003061,8.27e-10,98;UBERON:0000955,2.08e-08,68;UBERON:0006238,2.08e-08,68;UBERON:0002780,2.22e-08,41;UBERON:0001890,2.22e-08,41;UBERON:0003080,2.22e-08,41;UBERON:0006240,2.22e-08,41;UBERON:0002346,2.79e-08,86;UBERON:0002193,4.09e-08,108;UBERON:0003075,6.89e-08,82;UBERON:0007284,6.89e-08,82;UBERON:0001016,1.45e-07,89;UBERON:0001017,3.39e-07,81;UBERON:0001474,9.99e-07,82 | |||
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| ||
|short_description=p1@SRRM2 | |short_description=p1@SRRM2 | ||
}} | }} |
Latest revision as of 22:35, 15 September 2015
Short description: | p1@SRRM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SRRM2_5end |
Coexpression cluster: | C3547_granulocyte_acute_Eosinophils_salivary_hepatoblastoma_cerebellum_tridermal |
Association with transcript: | 0bp_to_ENST00000426305, uc002crl.1, uc010bsu.1_5end |
EntrezGene: | SRRM2 |
HGNC: | 16639 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.73e-17 | 168 |
hematopoietic cell | 7.10e-17 | 177 |
hematopoietic oligopotent progenitor cell | 4.36e-16 | 161 |
hematopoietic multipotent progenitor cell | 4.36e-16 | 161 |
leukocyte | 1.22e-15 | 136 |
myeloid cell | 1.33e-13 | 108 |
common myeloid progenitor | 1.33e-13 | 108 |
myeloid leukocyte | 9.98e-11 | 72 |
classical monocyte | 5.00e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.00e-10 | 42 |
hematopoietic lineage restricted progenitor cell | 5.93e-10 | 120 |
nongranular leukocyte | 2.08e-09 | 115 |
granulocyte monocyte progenitor cell | 2.32e-08 | 67 |
myeloid lineage restricted progenitor cell | 2.92e-07 | 66 |
defensive cell | 9.32e-07 | 48 |
phagocyte | 9.32e-07 | 48 |
macrophage dendritic cell progenitor | 9.51e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.05e-22 | 114 |
neural tube | 6.48e-11 | 56 |
neural rod | 6.48e-11 | 56 |
future spinal cord | 6.48e-11 | 56 |
neural keel | 6.48e-11 | 56 |
regional part of nervous system | 1.46e-10 | 53 |
regional part of brain | 1.46e-10 | 53 |
hematopoietic system | 8.27e-10 | 98 |
blood island | 8.27e-10 | 98 |
brain | 2.08e-08 | 68 |
future brain | 2.08e-08 | 68 |
regional part of forebrain | 2.22e-08 | 41 |
forebrain | 2.22e-08 | 41 |
anterior neural tube | 2.22e-08 | 41 |
future forebrain | 2.22e-08 | 41 |
neurectoderm | 2.79e-08 | 86 |
hemolymphoid system | 4.09e-08 | 108 |
neural plate | 6.89e-08 | 82 |
presumptive neural plate | 6.89e-08 | 82 |
nervous system | 1.45e-07 | 89 |
central nervous system | 3.39e-07 | 81 |
bone element | 9.99e-07 | 82 |