FFCP PHASE1:Hg19::chr20:20345174..20345187,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:20345174..20345187,+ | |||
|coexpression_cluster_id=C1864 | |||
|description=CAGE_peak_at_chr20:20345174..20345187,+ | |description=CAGE_peak_at_chr20:20345174..20345187,+ | ||
|id=chr20:20345174..20345187,+ | |id=chr20:20345174..20345187,+ | ||
|ontology_enrichment_celltype=CL:0000242!1.17e-31!2;CL:0002553!1.04e-16!1;CL:0000312!2.68e-13!5;CL:0000240!3.06e-11!6;CL:0000311!3.06e-11!6;CL:0000079!3.06e-11!6;CL:0000237!3.06e-11!6;CL:0000036!3.06e-11!6;CL:0000357!3.06e-11!6;CL:0000114!3.06e-11!6;CL:0002535!4.34e-09!2;CL:0000362!1.17e-08!8 | |ontology_enrichment_celltype=CL:0000242!1.17e-31!2;CL:0002553!1.04e-16!1;CL:0000312!2.68e-13!5;CL:0000240!3.06e-11!6;CL:0000311!3.06e-11!6;CL:0000079!3.06e-11!6;CL:0000237!3.06e-11!6;CL:0000036!3.06e-11!6;CL:0000357!3.06e-11!6;CL:0000114!3.06e-11!6;CL:0002535!4.34e-09!2;CL:0000362!1.17e-08!8 | ||
|ontology_enrichment_celltype_v019=CL:0000123;7.14e-26;2!CL:0000242;7.14e-26;2!CL:0002535;9.18e-26;2!CL:0000312;3.26e-11;5!CL:0000240;1.44e-09;6!CL:0000311;1.44e-09;6!CL:0000079;1.44e-09;6!CL:0000237;1.44e-09;6!CL:0000362;8.37e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,7.14e-26,2;CL:0002535,9.18e-26,2;CL:0000312,3.26e-11,5;CL:0000240,1.44e-09,6;CL:0000311,1.44e-09,6;CL:0000079,1.44e-09,6;CL:0000237,1.44e-09,6;CL:0000036,1.44e-09,6;CL:0000357,1.44e-09,6;CL:0000114,1.44e-09,6;CL:0000362,8.37e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;1.44e-09;6!CL:0000114;1.44e-09;6 | |||
|ontology_enrichment_disease=DOID:4362!1.85e-13!5;DOID:305!1.26e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:4362;2.71e-40;5!DOID:5409;1.00e-13;4!DOID:1325;2.03e-08;7!DOID:3904;2.03e-08;7!DOID:120;2.14e-08;27!DOID:193;6.91e-08;29!DOID:3905;7.91e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,2.71e-40,5;DOID:5409,1.00e-13,4;DOID:1325,2.03e-08,7;DOID:3904,2.03e-08,7;DOID:120,2.14e-08,27;DOID:193,6.91e-08,29;DOID:3905,7.91e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0000002!2.25e-11!6;UBERON:0001560!2.25e-11!6;UBERON:0006955!4.34e-09!2;UBERON:0004801!4.34e-09!2;UBERON:0001155!1.05e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000002;8.35e-34;6!UBERON:0001560;8.35e-34;6!UBERON:0006955;9.18e-26;2!UBERON:0004801;9.18e-26;2!UBERON:0000995;1.03e-12;17!UBERON:0003975;4.55e-12;18!UBERON:0004175;1.69e-10;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000002,8.35e-34,6;UBERON:0001560,8.35e-34,6;UBERON:0006955,9.18e-26,2;UBERON:0004801,9.18e-26,2;UBERON:0000995,1.69e-10,21;UBERON:0005795,4.53e-10,22;UBERON:0003975,4.53e-10,22;UBERON:0004175,5.49e-09,25 | |||
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|short_description=p@chr20:20345174..20345187,+ | |short_description=p@chr20:20345174..20345187,+ | ||
}} | }} |
Latest revision as of 12:20, 28 July 2015
Short description: | p@chr20:20345174..20345187, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:20345174..20345187, + |
Coexpression cluster: | C1864_argyrophil_merkel_small_gastrointestinal_smallcell_migratory_nonsmall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 7.14e-26 | 2 |
epithelial cell of cervix | 9.18e-26 | 2 |
keratinocyte | 3.26e-11 | 5 |
stratified squamous epithelial cell | 1.44e-09 | 6 |
keratin accumulating cell | 1.44e-09 | 6 |
stratified epithelial cell | 1.44e-09 | 6 |
keratinizing barrier epithelial cell | 1.44e-09 | 6 |
epithelial fate stem cell | 1.44e-09 | 6 |
stratified epithelial stem cell | 1.44e-09 | 6 |
surface ectodermal cell | 1.44e-09 | 6 |
epidermal cell | 8.37e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
uterine cervix | 8.35e-34 | 6 |
neck of organ | 8.35e-34 | 6 |
uterine epithelium | 9.18e-26 | 2 |
cervix epithelium | 9.18e-26 | 2 |
uterus | 1.69e-10 | 21 |
embryonic uterus | 4.53e-10 | 22 |
internal female genitalia | 4.53e-10 | 22 |
internal genitalia | 5.49e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 2.71e-40 | 5 |
lung small cell carcinoma | 1.00e-13 | 4 |
bronchus cancer | 2.03e-08 | 7 |
bronchogenic carcinoma | 2.03e-08 | 7 |
female reproductive organ cancer | 2.14e-08 | 27 |
reproductive organ cancer | 6.91e-08 | 29 |
lung carcinoma | 7.91e-07 | 9 |