FFCP PHASE1:Hg19::chr17:42426361..42426388,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2896 | |EntrezGene=2896 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=4601 | |HGNC=4601 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-137bp_to_uc002igq.1_5end | |association_with_transcript=-137bp_to_uc002igq.1_5end | ||
|cluster_id=chr17:42426361..42426388,+ | |||
|coexpression_cluster_id=C74 | |||
|description=CAGE_peak_10_at_GRN_5end | |description=CAGE_peak_10_at_GRN_5end | ||
|id=chr17:42426361..42426388,+ | |id=chr17:42426361..42426388,+ | ||
|ontology_enrichment_celltype=CL:0002076!5.58e-18!43;CL:0000223!3.14e-14!59;CL:0002368!4.26e-14!13;CL:0002159!4.40e-14!13;CL:0000244!3.17e-11!4;CL:0000731!3.17e-11!4;CL:0000066!5.09e-11!254;CL:0000622!1.35e-08!5;CL:0000068!4.31e-08!3;CL:0000069!4.31e-08!3;CL:0000307!4.31e-08!3;CL:0000377!4.31e-08!3;CL:0002251!5.07e-08!21;CL:0002621!1.20e-07!3;CL:0000362!1.49e-07!8;CL:0000154!3.84e-07!6;CL:0002327!7.08e-07!4;CL:0000240!7.66e-07!6;CL:0000311!7.66e-07!6;CL:0000079!7.66e-07!6;CL:0000237!7.66e-07!6;CL:0000036!7.66e-07!6;CL:0000357!7.66e-07!6;CL:0000114!7.66e-07!6;CL:0002077!9.46e-07!33;CL:0002202!9.48e-07!9;CL:0002632!9.48e-07!9;CL:0000945!9.99e-07!24;CL:0000826!9.99e-07!24 | |ontology_enrichment_celltype=CL:0002076!5.58e-18!43;CL:0000223!3.14e-14!59;CL:0002368!4.26e-14!13;CL:0002159!4.40e-14!13;CL:0000244!3.17e-11!4;CL:0000731!3.17e-11!4;CL:0000066!5.09e-11!254;CL:0000622!1.35e-08!5;CL:0000068!4.31e-08!3;CL:0000069!4.31e-08!3;CL:0000307!4.31e-08!3;CL:0000377!4.31e-08!3;CL:0002251!5.07e-08!21;CL:0002621!1.20e-07!3;CL:0000362!1.49e-07!8;CL:0000154!3.84e-07!6;CL:0002327!7.08e-07!4;CL:0000240!7.66e-07!6;CL:0000311!7.66e-07!6;CL:0000079!7.66e-07!6;CL:0000237!7.66e-07!6;CL:0000036!7.66e-07!6;CL:0000357!7.66e-07!6;CL:0000114!7.66e-07!6;CL:0002077!9.46e-07!33;CL:0002202!9.48e-07!9;CL:0002632!9.48e-07!9;CL:0000945!9.99e-07!24;CL:0000826!9.99e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000244;8.75e-24;4!CL:0000731;8.75e-24;4!CL:0002076;1.11e-14;42!CL:0002327;3.09e-14;4!CL:0000575;9.53e-13;2!CL:0000622;5.93e-11;5!CL:0002368;9.33e-11;13!CL:0002159;4.40e-10;14!CL:0000154;3.31e-09;6!CL:0002623;8.91e-09;3!CL:0000307;1.44e-08;3!CL:0002231;2.36e-08;3!CL:0000945;5.33e-08;24!CL:0002252;2.23e-07;1!CL:0002251;4.30e-07;20!CL:0002336;7.08e-07;1!CL:0002261;7.08e-07;1!CL:0002170;7.08e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,7.58e-24,4;CL:0000731,7.58e-24,4;CL:0002076,4.00e-17,42;CL:0002327,2.54e-14,4;CL:0000575,1.01e-12,2;CL:0000223,9.22e-12,58;CL:0000622,3.80e-11,5;CL:0002368,1.14e-10,13;CL:0002159,3.96e-10,14;CL:0000066,4.25e-10,253;CL:0000154,2.29e-09,6;CL:0002623,7.20e-09,3;CL:0000068,2.19e-08,3;CL:0000069,2.19e-08,3;CL:0000307,2.19e-08,3;CL:0000377,2.19e-08,3;CL:0002231,3.19e-08,3;CL:0000945,5.59e-08,24;CL:0000826,5.59e-08,24;CL:0002252,2.37e-07,1;CL:0002251,3.84e-07,20;CL:0002336,6.49e-07,1;CL:0002261,6.49e-07,1;CL:0002170,6.49e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000377;1.44e-08;3!CL:0000223;4.71e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:630;7.08e-07;1!DOID:0050177;7.08e-07;1!DOID:0050427;7.08e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,5.78e-07,1;DOID:0050177,5.78e-07,1;DOID:0050427,5.78e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!3.05e-10!72;UBERON:0000365!5.93e-09!5;UBERON:0004119!9.52e-09!169;UBERON:0000925!9.52e-09!169;UBERON:0006595!9.52e-09!169;UBERON:0000161!1.58e-08!35;UBERON:0000166!9.84e-08!21;UBERON:0001949!1.20e-07!3;UBERON:0000065!1.89e-07!53;UBERON:0005910!1.96e-07!6;UBERON:0001911!7.08e-07!4;UBERON:0005333!7.08e-07!4;UBERON:0008425!7.08e-07!4;UBERON:0005311!7.08e-07!4 | |ontology_enrichment_uberon=UBERON:0001004!3.05e-10!72;UBERON:0000365!5.93e-09!5;UBERON:0004119!9.52e-09!169;UBERON:0000925!9.52e-09!169;UBERON:0006595!9.52e-09!169;UBERON:0000161!1.58e-08!35;UBERON:0000166!9.84e-08!21;UBERON:0001949!1.20e-07!3;UBERON:0000065!1.89e-07!53;UBERON:0005910!1.96e-07!6;UBERON:0001911!7.08e-07!4;UBERON:0005333!7.08e-07!4;UBERON:0008425!7.08e-07!4;UBERON:0005311!7.08e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;4.52e-19;5!UBERON:0005910;6.36e-16;6!UBERON:0001911;3.09e-14;4!UBERON:0000486;5.15e-08;12!UBERON:0000964;8.69e-07;4!UBERON:0010409;8.69e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,4.03e-19,5;UBERON:0005910,5.79e-16,6;UBERON:0001911,2.54e-14,4;UBERON:0005333,2.54e-14,4;UBERON:0008425,2.54e-14,4;UBERON:0005311,2.54e-14,4;UBERON:0000076,2.22e-07,8;UBERON:0000964,8.95e-07,4;UBERON:0010409,8.95e-07,4;UBERON:0004348,8.95e-07,4;UBERON:0005427,8.95e-07,4;UBERON:0004119,9.35e-07,160;UBERON:0000925,9.35e-07,160;UBERON:0006595,9.35e-07,160;UBERON:0005157,9.56e-07,47 | |||
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| ||
|short_description=p10@GRN | |short_description=p10@GRN | ||
}} | }} |
Latest revision as of 21:03, 24 September 2015
Short description: | p10@GRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_GRN_5end |
Coexpression cluster: | C74_splenic_B_b_plasma_xeroderma_lymphoma_hairy |
Association with transcript: | -137bp_to_uc002igq.1_5end |
EntrezGene: | GRN |
HGNC: | 4601 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 7.58e-24 | 4 |
urothelial cell | 7.58e-24 | 4 |
endo-epithelial cell | 4.00e-17 | 42 |
mammary gland epithelial cell | 2.54e-14 | 4 |
corneal epithelial cell | 1.01e-12 | 2 |
endodermal cell | 9.22e-12 | 58 |
acinar cell | 3.80e-11 | 5 |
respiratory epithelial cell | 1.14e-10 | 13 |
general ecto-epithelial cell | 3.96e-10 | 14 |
epithelial cell | 4.25e-10 | 253 |
protein secreting cell | 2.29e-09 | 6 |
acinar cell of salivary gland | 7.20e-09 | 3 |
duct epithelial cell | 2.19e-08 | 3 |
branched duct epithelial cell | 2.19e-08 | 3 |
tracheal epithelial cell | 2.19e-08 | 3 |
tracheoblast | 2.19e-08 | 3 |
epithelial cell of prostate | 3.19e-08 | 3 |
lymphocyte of B lineage | 5.59e-08 | 24 |
pro-B cell | 5.59e-08 | 24 |
epithelial cell of esophagus | 2.37e-07 | 1 |
epithelial cell of alimentary canal | 3.84e-07 | 20 |
buccal mucosa cell | 6.49e-07 | 1 |
endothelial cell of viscerocranial mucosa | 6.49e-07 | 1 |
keratinized cell of the oral mucosa | 6.49e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
urothelium | 4.03e-19 | 5 |
transitional epithelium | 5.79e-16 | 6 |
mammary gland | 2.54e-14 | 4 |
mammary bud | 2.54e-14 | 4 |
mammary ridge | 2.54e-14 | 4 |
mammary placode | 2.54e-14 | 4 |
external ectoderm | 2.22e-07 | 8 |
cornea | 8.95e-07 | 4 |
eye surface | 8.95e-07 | 4 |
optic eminence | 8.95e-07 | 4 |
corneal primordium | 8.95e-07 | 4 |
endoderm-derived structure | 9.35e-07 | 160 |
endoderm | 9.35e-07 | 160 |
presumptive endoderm | 9.35e-07 | 160 |
epithelial fold | 9.56e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 5.78e-07 | 1 |
monogenic disease | 5.78e-07 | 1 |
xeroderma pigmentosum | 5.78e-07 | 1 |