FFCP PHASE1:Hg19::chr17:48277566..48277608,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-14bp_to_ENST00000507689_5end | |association_with_transcript=-14bp_to_ENST00000507689_5end | ||
|cluster_id=chr17:48277566..48277608,- | |||
|coexpression_cluster_id=C3132 | |||
|description=CAGE_peak_5_at_COL1A1_5end | |description=CAGE_peak_5_at_COL1A1_5end | ||
|id=chr17:48277566..48277608,- | |id=chr17:48277566..48277608,- | ||
|ontology_enrichment_celltype=CL:0000055!1.24e-27!180;CL:0000057!2.04e-15!75;CL:0000183!1.46e-12!59;CL:0000680!1.26e-11!57;CL:0000056!1.26e-11!57;CL:0000355!1.26e-11!57;CL:0000187!1.92e-11!54;CL:0000393!3.05e-10!60;CL:0000211!3.05e-10!60;CL:0000548!9.31e-10!679;CL:0000004!9.31e-10!679;CL:0000255!9.31e-10!679;CL:0000012!1.50e-09!682;CL:0000192!3.19e-09!42;CL:0000514!3.19e-09!42;CL:0000144!2.98e-08!625;CL:0000499!4.28e-08!27;CL:0002371!3.31e-07!591;CL:0000327!5.16e-07!14;CL:0002494!8.99e-07!16 | |ontology_enrichment_celltype=CL:0000055!1.24e-27!180;CL:0000057!2.04e-15!75;CL:0000183!1.46e-12!59;CL:0000680!1.26e-11!57;CL:0000056!1.26e-11!57;CL:0000355!1.26e-11!57;CL:0000187!1.92e-11!54;CL:0000393!3.05e-10!60;CL:0000211!3.05e-10!60;CL:0000548!9.31e-10!679;CL:0000004!9.31e-10!679;CL:0000255!9.31e-10!679;CL:0000012!1.50e-09!682;CL:0000192!3.19e-09!42;CL:0000514!3.19e-09!42;CL:0000144!2.98e-08!625;CL:0000499!4.28e-08!27;CL:0002371!3.31e-07!591;CL:0000327!5.16e-07!14;CL:0002494!8.99e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.81e-09;19!CL:0000499;1.26e-08;28!CL:0000134;4.23e-08;55!CL:0000327;7.38e-08;15!CL:0000187;9.06e-08;55!CL:0000048;2.35e-07;58!CL:0000192;2.58e-07;43!CL:0002494;3.63e-07;16!CL:0000723;3.68e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.91e-15,76;CL:0000680,7.14e-13,58;CL:0000056,7.14e-13,58;CL:0000355,7.14e-13,58;CL:0000187,1.12e-12,55;CL:0000393,7.14e-11,61;CL:0000211,7.14e-11,61;CL:0000192,4.08e-10,43;CL:0000514,4.08e-10,43;CL:0000349,2.58e-09,19;CL:0000499,1.12e-08,28;CL:0000327,6.64e-08,15;CL:0002494,3.39e-07,16;CL:0000359,8.45e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000355;1.46e-07;58!CL:0000514;2.58e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!4.87e-12!143;UBERON:0000481!9.30e-12!347;UBERON:0000475!2.02e-11!365;UBERON:0001134!2.77e-11!61;UBERON:0002036!2.77e-11!61;UBERON:0003082!2.77e-11!61;UBERON:0003104!3.99e-11!238;UBERON:0009142!3.99e-11!238;UBERON:0002100!4.29e-11!216;UBERON:0002385!9.42e-11!63;UBERON:0001015!9.42e-11!63;UBERON:0000383!9.42e-11!63;UBERON:0000914!2.80e-10!83;UBERON:0002329!2.80e-10!83;UBERON:0003077!2.80e-10!83;UBERON:0003059!2.80e-10!83;UBERON:0007282!2.80e-10!83;UBERON:0009618!2.80e-10!83;UBERON:0007285!2.80e-10!83;UBERON:0000486!4.68e-10!82;UBERON:0004290!2.55e-09!70;UBERON:0002200!3.90e-07!11;UBERON:0006876!3.90e-07!11;UBERON:0000478!4.88e-07!24 | |ontology_enrichment_uberon=UBERON:0005256!4.87e-12!143;UBERON:0000481!9.30e-12!347;UBERON:0000475!2.02e-11!365;UBERON:0001134!2.77e-11!61;UBERON:0002036!2.77e-11!61;UBERON:0003082!2.77e-11!61;UBERON:0003104!3.99e-11!238;UBERON:0009142!3.99e-11!238;UBERON:0002100!4.29e-11!216;UBERON:0002385!9.42e-11!63;UBERON:0001015!9.42e-11!63;UBERON:0000383!9.42e-11!63;UBERON:0000914!2.80e-10!83;UBERON:0002329!2.80e-10!83;UBERON:0003077!2.80e-10!83;UBERON:0003059!2.80e-10!83;UBERON:0007282!2.80e-10!83;UBERON:0009618!2.80e-10!83;UBERON:0007285!2.80e-10!83;UBERON:0000486!4.68e-10!82;UBERON:0004290!2.55e-09!70;UBERON:0002200!3.90e-07!11;UBERON:0006876!3.90e-07!11;UBERON:0000478!4.88e-07!24 | ||
|ontology_enrichment_uberon_v019=UBERON:0006876;1.47e-07;11!UBERON:0000478;2.10e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.23e-12,160;UBERON:0009142,1.23e-12,160;UBERON:0001134,1.31e-12,62;UBERON:0002036,1.31e-12,62;UBERON:0003082,1.31e-12,62;UBERON:0002385,7.40e-12,64;UBERON:0001015,7.40e-12,64;UBERON:0000383,7.40e-12,64;UBERON:0005256,4.89e-11,122;UBERON:0007503,1.34e-10,78;UBERON:0000486,2.09e-10,83;UBERON:0002100,8.51e-10,199;UBERON:0002329,1.13e-09,71;UBERON:0003059,1.13e-09,71;UBERON:0007282,1.13e-09,71;UBERON:0004290,1.13e-09,71;UBERON:0009618,1.13e-09,71;UBERON:0007524,1.23e-09,73;UBERON:0003077,3.00e-09,72;UBERON:0007285,3.00e-09,72;UBERON:0006876,1.38e-07,11;UBERON:0000478,2.90e-07,24 | |||
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|phase1_expression=31.0670028552652,20.1254492457524,36.0843274485686,31.0227224894704,32.1811987987647,8.72338524100369,10.1319951267324,0,0.261185628199839,7.12628415854376,17.4450291993107,29.2711438654431,138.741430548167,2.59909341216098,11.930305526205,3.36162573225888,3.61616716814386,2.19093027116212,4.39139518911456,109.823983804495,65.280221198161,64.5716726244861,7.44213566540748,5.47497700291537,14.8140314721867,3.132949635666,2.95562122019805,2.75487734597877,0,0.383829398097213,0.928896739896456,5.51652734687356,8.433765725791,4.80680213216824,0,0,0,0.553995408531877,0,0.434021741431704,0,0,0.257575567634187,0,0,0,0,0,0,0,0.256160706529101,0,0,0.645484683583826,0,0,0,0.449446968890169,0,0,0.639337125799041,0,0,0,0,0,1.24564449799115,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,1.75996244461323,0,0,0,0,0.574752439954483,0,0,0.569212969109448,2.34894875748376,2.29363936875137,1.32171328579026,1.68152568894461,0,1.180258620683,2.35806457649499,0.822405995998037,0,0.32592226663359,0.473447805734733,0,0,0,0.221533894583621,0,0.128091319725675,0,0.164437904603676,0.276350017785848,0,0.14828656316206,0.267540828089713,0,0.113309342697566,0.766440987203842,0,0.253019692019503,0,0,0,0,0.255973222308837,0,0,0,0.403213486449465,0.534880391567015,1.01377082717959,9.75227465255847,36.8885472837,47.8205981294803,33.2524020193801,59.157873455035,19.2645870217896,28.6302940938396,13.1391414981712,19.3796375186339,45.6762558772882,36.9784447768061,1.17881167947941,8.74308691902101,5.93255108455087,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,1.31780417436063,3.87780264148325,12.210633459991,41.2486719907114,20.5141428896619,19.3317403987299,44.7465128368149,10.2853830837524,46.5362408118115,39.4971284199908,51.5535176191864,19.2950841947855,28.6933731508436,12.4231046366229,151.206070217286,163.63396255232,18.9800359785375,0.312160076830321,1.1409436430889,0.298897361103602,0.587172493218824,0.485618833104395,0.98315564691574,3.26646674007829,1.10550885580591,5.26961483996404,41.5801000048719,44.2607803408617,36.4064544775211,39.5239977998931,2.52504170931099,2.50237039743928,1.10825646193673,25.0217243902078,21.1476579101324,38.761419197902,20.5312251519638,16.6832361190642,13.8812302732069,20.7693263136371,33.0100205692843,10.6144105115592,30.4015837253842,9.67807652924267,15.3586462339552,10.6206335625707,22.9714734562144,18.4099797284599,19.3975268182574,9.58525899794859,5.54136540252021,5.76506013855658,2.70565194428616,4.36393792945335,1.14721838155602,0.121973706129595,0.927708378250397,2.09149097165133,2.90250954043037,0.504641701751257,2.55484151353081,3.12899064659632,10.935095949279,0,2.3218396401599,2.88751792667834,5.91534000199219,9.27215795429559,7.47134192638794,8.60292987312673,6.75426276686459,5.93176547777742,7.01122802432855,6.27908688401107,6.54070166808864,2.95262181849859,28.0483547606892,102.481928821519,110.256533539156,1.26755034821831,1.96565443335525,0,0,3.07471096357784,18.5293235122408,6.80451769533479,4.49607013030478,1.20634766893957,2.77765335475589,8.47101593806844,8.31947828223663,5.77325368101093,13.6797877870591,92.9876858347708,0.721832238805369,0.462985512576611,0,2.37061319387782,0.858486162094873,0,0,0,0.93733833986777,6.04735661515894,2.1266264586358,0.895585227028483,0.290633938513962,1.15014803749563,0,0,0.207328115540772,0.432359860250884,0.37872730027914,0.126995788584338,0,0,0,0.102827492703324,0.300343057843917,0,84.4347065120566,123.812659548652,39.3093212000292,36.4546238436933,28.6125156681506,10.988935783228,17.8178538111863,9.36066932202295,2.57207374262142,9.92943924162948,3.99633268524149,65.6268990890897,136.198022953252,40.3387765022577,13.6809197403369,63.9705507736582,19.0068449504023,9.04318131178758,16.5591357134056,5.89840647974137,0,0,0,103.997187283347,179.184619901218,0,5.79125226670317,5.54786070886035,4.1184021545176,0.336255431980582,0.394061520403854,0.862510299438069,1.41177339907723,2.03275699377971,1.30139853857622,0.773288812777695,1.34013012267479,0.637938751653163,0,0,0.414415513436035,4.41689370188904,4.50153468953709,5.96783052139418,45.337647813716,29.9760701179232,26.494005725701,17.3369294189216,43.0352922610638,4.5481500811197,10.3473071292505,37.8608591165199,30.0521744722976,2.25897397617015,439.965200818778,437.507865358841,0.413536052245775,0.647142602455851,0.213455115606889,73.0537447185485,366.157966923094,220.442523837337,25.8032120131528,37.5981834555753,35.9244920874334,26.2685255974187,24.0502407061351,28.3102901212749,11.8734453155993,3.39261326365842,10.8312652441008,2.21743321237285,2.59627214591811,2.90525946149898,3.98836183652353,2.20557117333613,3.22283461275637,25.0295496998843,21.4867578247926,9.04758463220026,6.31679458070376,3.61972084390749,19.6087442294214,2.92278449306521,9.49964660035881,2.27466768141793,0,11.8753753856177,7.71136263451447,12.7344825645611,34.6165943959849,1.01950509218015,0.831076008928724,3.5819960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| ||
|short_description=p5@COL1A1 | |short_description=p5@COL1A1 | ||
}} | }} |
Latest revision as of 01:32, 16 September 2015
Short description: | p5@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL1A1_5end |
Coexpression cluster: | C3132_Pericytes_Mesenchymal_Skeletal_skeletal_amniotic_Hair_gastric |
Association with transcript: | -14bp_to_ENST00000507689_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.91e-15 | 76 |
muscle precursor cell | 7.14e-13 | 58 |
myoblast | 7.14e-13 | 58 |
multi-potent skeletal muscle stem cell | 7.14e-13 | 58 |
muscle cell | 1.12e-12 | 55 |
electrically responsive cell | 7.14e-11 | 61 |
electrically active cell | 7.14e-11 | 61 |
smooth muscle cell | 4.08e-10 | 43 |
smooth muscle myoblast | 4.08e-10 | 43 |
extraembryonic cell | 2.58e-09 | 19 |
stromal cell | 1.12e-08 | 28 |
extracellular matrix secreting cell | 6.64e-08 | 15 |
cardiocyte | 3.39e-07 | 16 |
vascular associated smooth muscle cell | 8.45e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.23e-12 | 160 |
entire embryonic mesenchyme | 1.23e-12 | 160 |
skeletal muscle tissue | 1.31e-12 | 62 |
striated muscle tissue | 1.31e-12 | 62 |
myotome | 1.31e-12 | 62 |
muscle tissue | 7.40e-12 | 64 |
musculature | 7.40e-12 | 64 |
musculature of body | 7.40e-12 | 64 |
trunk mesenchyme | 4.89e-11 | 122 |
epithelial vesicle | 1.34e-10 | 78 |
multilaminar epithelium | 2.09e-10 | 83 |
trunk | 8.51e-10 | 199 |
somite | 1.13e-09 | 71 |
presomitic mesoderm | 1.13e-09 | 71 |
presumptive segmental plate | 1.13e-09 | 71 |
dermomyotome | 1.13e-09 | 71 |
trunk paraxial mesoderm | 1.13e-09 | 71 |
dense mesenchyme tissue | 1.23e-09 | 73 |
paraxial mesoderm | 3.00e-09 | 72 |
presumptive paraxial mesoderm | 3.00e-09 | 72 |
vasculature of organ | 1.38e-07 | 11 |
extraembryonic structure | 2.90e-07 | 24 |