FFCP PHASE1:Hg19::chr17:67138020..67138062,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23460 | |EntrezGene=23460 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=36 | |HGNC=36 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N139 | |UniProt=Q8N139 | ||
|association_with_transcript=-5bp_to_ENST00000284425,NM_080284,uc002jhw.1,uc002jhy.2_5end | |association_with_transcript=-5bp_to_ENST00000284425,NM_080284,uc002jhw.1,uc002jhy.2_5end | ||
|cluster_id=chr17:67138020..67138062,- | |||
|coexpression_cluster_id=C2432 | |||
|description=CAGE_peak_1_at_ABCA6_5end | |description=CAGE_peak_1_at_ABCA6_5end | ||
|id=chr17:67138020..67138062,- | |id=chr17:67138020..67138062,- | ||
|ontology_enrichment_celltype=CL:0000057!2.68e-11!75;CL:0000680!1.04e-10!57;CL:0000056!1.04e-10!57;CL:0000355!1.04e-10!57;CL:0000187!2.49e-10!54;CL:0000055!3.16e-10!180;CL:0000222!3.14e-09!119;CL:0000183!1.68e-08!59;CL:0000192!3.30e-08!42;CL:0000514!3.30e-08!42;CL:0000393!9.63e-08!60;CL:0000211!9.63e-08!60;CL:0002494!4.54e-07!16;CL:0000359!7.80e-07!32 | |ontology_enrichment_celltype=CL:0000057!2.68e-11!75;CL:0000680!1.04e-10!57;CL:0000056!1.04e-10!57;CL:0000355!1.04e-10!57;CL:0000187!2.49e-10!54;CL:0000055!3.16e-10!180;CL:0000222!3.14e-09!119;CL:0000183!1.68e-08!59;CL:0000192!3.30e-08!42;CL:0000514!3.30e-08!42;CL:0000393!9.63e-08!60;CL:0000211!9.63e-08!60;CL:0002494!4.54e-07!16;CL:0000359!7.80e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002494;1.78e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.06e-09,76;CL:0000680,8.65e-08,58;CL:0000056,8.65e-08,58;CL:0000355,8.65e-08,58;CL:0000187,9.18e-08,55;CL:0002494,1.50e-07,16;CL:0000136,8.39e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;5.18e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.00e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.20e-36!115;UBERON:0000477!1.04e-25!286;UBERON:0004111!1.37e-25!241;UBERON:0000025!3.52e-22!194;UBERON:0004872!4.79e-20!84;UBERON:0001009!5.32e-19!113;UBERON:0000483!9.92e-19!309;UBERON:0000119!1.60e-18!312;UBERON:0004535!7.81e-18!110;UBERON:0000468!1.18e-15!659;UBERON:0000475!1.63e-15!365;UBERON:0003914!3.72e-15!118;UBERON:0002049!4.04e-15!79;UBERON:0007798!4.04e-15!79;UBERON:0000055!4.15e-14!69;UBERON:0000467!9.29e-14!625;UBERON:0000481!1.15e-13!347;UBERON:0000480!1.43e-13!626;UBERON:0001981!1.74e-13!60;UBERON:0007500!1.74e-13!60;UBERON:0004537!1.74e-13!60;UBERON:0006965!1.74e-13!60;UBERON:0002385!3.84e-13!63;UBERON:0001015!3.84e-13!63;UBERON:0000383!3.84e-13!63;UBERON:0007100!4.90e-13!27;UBERON:0004290!1.55e-12!70;UBERON:0001134!2.53e-12!61;UBERON:0002036!2.53e-12!61;UBERON:0003082!2.53e-12!61;UBERON:0000948!8.84e-12!24;UBERON:0005498!8.84e-12!24;UBERON:0004140!8.84e-12!24;UBERON:0009881!8.84e-12!24;UBERON:0004141!8.84e-12!24;UBERON:0003084!8.84e-12!24;UBERON:0007005!8.84e-12!24;UBERON:0004139!8.84e-12!24;UBERON:0004291!8.84e-12!24;UBERON:0000490!3.01e-11!138;UBERON:0002616!3.36e-11!59;UBERON:0001637!4.83e-11!42;UBERON:0003509!4.83e-11!42;UBERON:0004572!4.83e-11!42;UBERON:0000914!9.76e-11!83;UBERON:0002329!9.76e-11!83;UBERON:0003077!9.76e-11!83;UBERON:0003059!9.76e-11!83;UBERON:0007282!9.76e-11!83;UBERON:0009618!9.76e-11!83;UBERON:0007285!9.76e-11!83;UBERON:0001049!1.20e-10!57;UBERON:0005068!1.20e-10!57;UBERON:0006241!1.20e-10!57;UBERON:0007135!1.20e-10!57;UBERON:0004573!2.15e-10!33;UBERON:0004571!2.15e-10!33;UBERON:0002050!9.23e-10!605;UBERON:0005423!9.23e-10!605;UBERON:0000923!1.19e-09!604;UBERON:0005291!1.19e-09!604;UBERON:0006598!1.19e-09!604;UBERON:0002532!1.19e-09!604;UBERON:0000922!1.28e-09!612;UBERON:0000486!2.23e-09!82;UBERON:0003075!1.22e-08!86;UBERON:0007284!1.22e-08!86;UBERON:0005256!1.57e-08!143;UBERON:0002346!2.86e-08!90;UBERON:0002100!3.66e-08!216;UBERON:0000955!6.71e-08!69;UBERON:0006238!6.71e-08!69;UBERON:0003080!7.01e-08!42;UBERON:0000947!1.39e-07!21;UBERON:0010191!1.39e-07!21;UBERON:0002780!2.02e-07!41;UBERON:0001890!2.02e-07!41;UBERON:0006240!2.02e-07!41;UBERON:0000479!2.88e-07!787 | |ontology_enrichment_uberon=UBERON:0007023!1.20e-36!115;UBERON:0000477!1.04e-25!286;UBERON:0004111!1.37e-25!241;UBERON:0000025!3.52e-22!194;UBERON:0004872!4.79e-20!84;UBERON:0001009!5.32e-19!113;UBERON:0000483!9.92e-19!309;UBERON:0000119!1.60e-18!312;UBERON:0004535!7.81e-18!110;UBERON:0000468!1.18e-15!659;UBERON:0000475!1.63e-15!365;UBERON:0003914!3.72e-15!118;UBERON:0002049!4.04e-15!79;UBERON:0007798!4.04e-15!79;UBERON:0000055!4.15e-14!69;UBERON:0000467!9.29e-14!625;UBERON:0000481!1.15e-13!347;UBERON:0000480!1.43e-13!626;UBERON:0001981!1.74e-13!60;UBERON:0007500!1.74e-13!60;UBERON:0004537!1.74e-13!60;UBERON:0006965!1.74e-13!60;UBERON:0002385!3.84e-13!63;UBERON:0001015!3.84e-13!63;UBERON:0000383!3.84e-13!63;UBERON:0007100!4.90e-13!27;UBERON:0004290!1.55e-12!70;UBERON:0001134!2.53e-12!61;UBERON:0002036!2.53e-12!61;UBERON:0003082!2.53e-12!61;UBERON:0000948!8.84e-12!24;UBERON:0005498!8.84e-12!24;UBERON:0004140!8.84e-12!24;UBERON:0009881!8.84e-12!24;UBERON:0004141!8.84e-12!24;UBERON:0003084!8.84e-12!24;UBERON:0007005!8.84e-12!24;UBERON:0004139!8.84e-12!24;UBERON:0004291!8.84e-12!24;UBERON:0000490!3.01e-11!138;UBERON:0002616!3.36e-11!59;UBERON:0001637!4.83e-11!42;UBERON:0003509!4.83e-11!42;UBERON:0004572!4.83e-11!42;UBERON:0000914!9.76e-11!83;UBERON:0002329!9.76e-11!83;UBERON:0003077!9.76e-11!83;UBERON:0003059!9.76e-11!83;UBERON:0007282!9.76e-11!83;UBERON:0009618!9.76e-11!83;UBERON:0007285!9.76e-11!83;UBERON:0001049!1.20e-10!57;UBERON:0005068!1.20e-10!57;UBERON:0006241!1.20e-10!57;UBERON:0007135!1.20e-10!57;UBERON:0004573!2.15e-10!33;UBERON:0004571!2.15e-10!33;UBERON:0002050!9.23e-10!605;UBERON:0005423!9.23e-10!605;UBERON:0000923!1.19e-09!604;UBERON:0005291!1.19e-09!604;UBERON:0006598!1.19e-09!604;UBERON:0002532!1.19e-09!604;UBERON:0000922!1.28e-09!612;UBERON:0000486!2.23e-09!82;UBERON:0003075!1.22e-08!86;UBERON:0007284!1.22e-08!86;UBERON:0005256!1.57e-08!143;UBERON:0002346!2.86e-08!90;UBERON:0002100!3.66e-08!216;UBERON:0000955!6.71e-08!69;UBERON:0006238!6.71e-08!69;UBERON:0003080!7.01e-08!42;UBERON:0000947!1.39e-07!21;UBERON:0010191!1.39e-07!21;UBERON:0002780!2.02e-07!41;UBERON:0001890!2.02e-07!41;UBERON:0006240!2.02e-07!41;UBERON:0000479!2.88e-07!787 | ||
|ontology_enrichment_uberon_v019=UBERON:0007100;2.95e-13;25!UBERON:0000948;7.94e-12;22!UBERON:0004573;1.66e-09;33!UBERON:0004571;1.66e-09;33!UBERON:0007023;1.62e-08;114!UBERON:0001637;3.90e-08;42!UBERON:0003509;3.90e-08;42!UBERON:0004572;3.90e-08;42!UBERON:0000947;2.06e-07;21!UBERON:0010191;2.06e-07;21 | |||
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| ||
|short_description=p1@ABCA6 | |short_description=p1@ABCA6 | ||
}} | }} |
Latest revision as of 01:03, 17 September 2015
Short description: | p1@ABCA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ABCA6_5end |
Coexpression cluster: | C2432_Cardiac_Hepatocyte_Fibroblast_lung_heart_adipose_liver |
Association with transcript: | -5bp_to_ENST00000284425, NM_080284, uc002jhw.1, uc002jhy.2_5end |
EntrezGene: | ABCA6 |
HGNC: | 36 |
UniProt: | Q8N139 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.06e-09 | 76 |
muscle precursor cell | 8.65e-08 | 58 |
myoblast | 8.65e-08 | 58 |
multi-potent skeletal muscle stem cell | 8.65e-08 | 58 |
muscle cell | 9.18e-08 | 55 |
cardiocyte | 1.50e-07 | 16 |
fat cell | 8.39e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.00e-07 | 14 |