FFCP PHASE1:Hg19::chr2:167350691..167350705,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6332 | |EntrezGene=6332 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10594 | |HGNC=10594 | ||
|TSSclassifier=strong | |||
|UniProt=C9JII9 | |UniProt=C9JII9 | ||
|association_with_transcript=9bp_to_ENST00000441411_5end | |association_with_transcript=9bp_to_ENST00000441411_5end | ||
|cluster_id=chr2:167350691..167350705,- | |||
|coexpression_cluster_id=C131 | |||
|description=CAGE_peak_5_at_SCN7A_5end | |description=CAGE_peak_5_at_SCN7A_5end | ||
|id=chr2:167350691..167350705,- | |id=chr2:167350691..167350705,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005062;5.23e-11;4!UBERON:0007284;5.23e-11;4!UBERON:0006603;1.45e-10;65!UBERON:0007297;1.98e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.31e-70!115;UBERON:0003103!1.24e-13!69;UBERON:0000481!6.75e-12!347;UBERON:0007100!2.06e-11!27;UBERON:0003075!5.19e-10!86;UBERON:0007284!5.19e-10!86;UBERON:0002298!8.73e-10!8;UBERON:0000062!9.80e-10!511;UBERON:0001049!2.01e-09!57;UBERON:0005068!2.01e-09!57;UBERON:0006241!2.01e-09!57;UBERON:0007135!2.01e-09!57;UBERON:0002346!3.00e-09!90;UBERON:0003076!3.91e-08!15;UBERON:0003057!3.91e-08!15;UBERON:0000468!5.73e-08!659;UBERON:0000477!6.16e-08!286;UBERON:0000948!7.64e-08!24;UBERON:0005498!7.64e-08!24;UBERON:0004140!7.64e-08!24;UBERON:0009881!7.64e-08!24;UBERON:0004141!7.64e-08!24;UBERON:0003084!7.64e-08!24;UBERON:0007005!7.64e-08!24;UBERON:0004139!7.64e-08!24;UBERON:0004291!7.64e-08!24;UBERON:0000922!1.23e-07!612;UBERON:0000467!1.66e-07!625;UBERON:0003978!1.72e-07!3;UBERON:0009751!1.72e-07!3;UBERON:0000946!1.72e-07!3;UBERON:0002523!1.72e-07!3;UBERON:0005983!1.72e-07!3;UBERON:0002165!1.72e-07!3;UBERON:0002062!1.72e-07!3;UBERON:0007280!1.72e-07!3;UBERON:0004111!1.77e-07!241;UBERON:0000480!1.87e-07!626;UBERON:0004151!3.68e-07!3;UBERON:0005743!4.08e-07!86;UBERON:0002050!6.12e-07!605;UBERON:0005423!6.12e-07!605;UBERON:0001017!6.47e-07!82;UBERON:0006947!8.67e-07!3;UBERON:0004054!8.67e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0003978;1.60e-14;3!UBERON:0000946;1.60e-14;3!UBERON:0004151;6.39e-14;3!UBERON:0007100;4.85e-13;25!UBERON:0002133;2.37e-10;2!UBERON:0002081;4.58e-10;2!UBERON:0000948;3.12e-09;22!UBERON:0000160;4.27e-08;17!UBERON:0001155;8.09e-08;9!UBERON:0007023;4.09e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.47e-28,114;UBERON:0003978,1.53e-14,3;UBERON:0009751,1.53e-14,3;UBERON:0000946,1.53e-14,3;UBERON:0002523,1.53e-14,3;UBERON:0005983,1.53e-14,3;UBERON:0002165,1.53e-14,3;UBERON:0002062,1.53e-14,3;UBERON:0007280,1.53e-14,3;UBERON:0004151,8.00e-14,3;UBERON:0007100,6.07e-12,27;UBERON:0003103,3.37e-11,68;UBERON:0002133,2.43e-10,2;UBERON:0002081,5.50e-10,2;UBERON:0010227,5.50e-10,2;UBERON:0000948,2.41e-08,24;UBERON:0005498,2.41e-08,24;UBERON:0004140,2.41e-08,24;UBERON:0009881,2.41e-08,24;UBERON:0004141,2.41e-08,24;UBERON:0003084,2.41e-08,24;UBERON:0007005,2.41e-08,24;UBERON:0004139,2.41e-08,24;UBERON:0004291,2.41e-08,24;UBERON:0000160,5.02e-08,17;UBERON:0001155,7.74e-08,9 | |||
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| ||
|short_description=p5@SCN7A | |short_description=p5@SCN7A | ||
}} | }} |
Latest revision as of 00:17, 18 September 2015
Short description: | p5@SCN7A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SCN7A_5end |
Coexpression cluster: | C131_lung_trachea_Alveolar_thyroid_umbilical_throat_skin |
Association with transcript: | 9bp_to_ENST00000441411_5end |
EntrezGene: | SCN7A |
HGNC: | 10594 |
UniProt: | C9JII9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 8.47e-28 | 114 |
valve | 1.53e-14 | 3 |
cardiac mesenchyme | 1.53e-14 | 3 |
cardial valve | 1.53e-14 | 3 |
tunica intima | 1.53e-14 | 3 |
heart layer | 1.53e-14 | 3 |
endocardium | 1.53e-14 | 3 |
endocardial cushion | 1.53e-14 | 3 |
presumptive endocardium | 1.53e-14 | 3 |
cardiac chamber | 8.00e-14 | 3 |
primary circulatory organ | 6.07e-12 | 27 |
compound organ | 3.37e-11 | 68 |
atrioventricular valve | 2.43e-10 | 2 |
cardiac atrium | 5.50e-10 | 2 |
future cardiac atrium | 5.50e-10 | 2 |
heart | 2.41e-08 | 24 |
primitive heart tube | 2.41e-08 | 24 |
primary heart field | 2.41e-08 | 24 |
anterior lateral plate mesoderm | 2.41e-08 | 24 |
heart tube | 2.41e-08 | 24 |
heart primordium | 2.41e-08 | 24 |
cardiac mesoderm | 2.41e-08 | 24 |
cardiogenic plate | 2.41e-08 | 24 |
heart rudiment | 2.41e-08 | 24 |
intestine | 5.02e-08 | 17 |
colon | 7.74e-08 | 9 |