FFCP PHASE1:Hg19::chr17:9808183..9808184,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5957 | |EntrezGene=5957 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=9937 | |HGNC=9937 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=5bp_to_DQ980606_5end | |association_with_transcript=5bp_to_DQ980606_5end | ||
|cluster_id=chr17:9808183..9808184,- | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_4_at_RCVRN_5end | |description=CAGE_peak_4_at_RCVRN_5end | ||
|id=chr17:9808183..9808184,- | |id=chr17:9808183..9808184,- | ||
|ontology_enrichment_celltype=CL:0000708!2.79e-07!3 | |ontology_enrichment_celltype=CL:0000708!2.79e-07!3 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.00e-18;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!2.73e-37!2;UBERON:0002757!2.73e-37!2;UBERON:0010134!2.73e-37!2;UBERON:0002784!2.73e-37!2;UBERON:0005408!2.73e-37!2;UBERON:0001899!2.73e-37!2;UBERON:0003296!3.26e-19!4;UBERON:0010133!3.26e-19!4;UBERON:0002336!3.91e-19!1;UBERON:0001018!3.91e-19!1;UBERON:0002473!3.91e-19!1;UBERON:0005340!3.91e-19!1;UBERON:0002316!3.91e-19!1;UBERON:0003544!3.91e-19!1;UBERON:0001020!3.91e-19!1;UBERON:0005970!3.91e-19!1;UBERON:0002437!3.91e-19!1;UBERON:0002581!4.69e-19!1;UBERON:0001882!5.62e-19!1;UBERON:0005403!5.62e-19!1;UBERON:0003056!3.87e-18!61;UBERON:0000966!1.40e-15!5;UBERON:0005388!1.40e-15!5;UBERON:0001802!1.40e-15!5;UBERON:0000970!5.98e-15!20;UBERON:0002104!2.95e-14!21;UBERON:0000020!4.76e-13!23;UBERON:0003075!8.35e-13!86;UBERON:0007284!8.35e-13!86;UBERON:0001032!1.61e-12!24;UBERON:0004456!1.61e-12!24;UBERON:0002346!3.20e-12!90;UBERON:0001894!2.07e-11!7;UBERON:0006222!2.07e-11!7;UBERON:0002780!8.91e-11!41;UBERON:0001890!8.91e-11!41;UBERON:0006240!8.91e-11!41;UBERON:0003080!1.58e-10!42;UBERON:0005162!2.99e-10!2;UBERON:0000122!2.99e-10!2;UBERON:0005743!1.01e-09!86;UBERON:0000019!2.98e-09!19;UBERON:0000047!2.98e-09!19;UBERON:0004088!2.98e-09!19;UBERON:0003072!2.98e-09!19;UBERON:0003071!2.98e-09!19;UBERON:0004128!2.98e-09!19;UBERON:0000955!5.58e-09!69;UBERON:0006238!5.58e-09!69;UBERON:0000073!8.75e-09!94;UBERON:0001016!8.75e-09!94;UBERON:0000033!9.32e-09!123;UBERON:0001456!2.00e-08!21;UBERON:0000153!2.49e-08!129;UBERON:0007811!2.49e-08!129;UBERON:0001049!8.15e-08!57;UBERON:0005068!8.15e-08!57;UBERON:0006241!8.15e-08!57;UBERON:0007135!8.15e-08!57;UBERON:0001017!1.47e-07!82;UBERON:0002616!1.48e-07!59;UBERON:0003210!2.79e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;4.22e-98;2!UBERON:0002757;4.22e-98;2!UBERON:0010134;4.22e-98;2!UBERON:0005408;4.22e-98;2!UBERON:0001899;4.22e-98;2!UBERON:0003296;8.47e-50;4!UBERON:0010133;8.47e-50;4!UBERON:0002784;8.47e-50;4!UBERON:0001894;4.86e-29;7!UBERON:0000966;2.94e-11;5!UBERON:0005388;2.94e-11;5!UBERON:0001802;2.94e-11;5!UBERON:0000970;5.16e-11;20!UBERON:0002104;1.53e-10;21!UBERON:0000020;1.02e-09;23!UBERON:0001032;2.35e-09;24!UBERON:0004456;2.35e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,4.22e-98,2;UBERON:0002757,4.22e-98,2;UBERON:0010134,4.22e-98,2;UBERON:0005408,4.22e-98,2;UBERON:0001899,4.22e-98,2;UBERON:0003296,8.47e-50,4;UBERON:0010133,8.47e-50,4;UBERON:0002784,8.47e-50,4;UBERON:0001894,4.86e-29,7;UBERON:0006222,4.86e-29,7;UBERON:0000970,1.53e-10,21;UBERON:0002104,1.53e-10,21;UBERON:0000966,1.32e-09,6;UBERON:0005388,1.32e-09,6;UBERON:0001802,1.32e-09,6;UBERON:0000020,2.35e-09,24;UBERON:0001032,2.35e-09,24;UBERON:0004456,2.35e-09,24;UBERON:0003056,4.61e-08,61 | |||
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|short_description=p4@RCVRN | |short_description=p4@RCVRN | ||
}} | }} |
Latest revision as of 17:18, 18 September 2015
Short description: | p4@RCVRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RCVRN_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 5bp_to_DQ980606_5end |
EntrezGene: | RCVRN |
HGNC: | 9937 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 4.22e-98 | 2 |
regional part of epithalamus | 4.22e-98 | 2 |
secretory circumventricular organ | 4.22e-98 | 2 |
circumventricular organ | 4.22e-98 | 2 |
epithalamus | 4.22e-98 | 2 |
gland of diencephalon | 8.47e-50 | 4 |
neuroendocrine gland | 8.47e-50 | 4 |
regional part of diencephalon | 8.47e-50 | 4 |
diencephalon | 4.86e-29 | 7 |
future diencephalon | 4.86e-29 | 7 |
eye | 1.53e-10 | 21 |
visual system | 1.53e-10 | 21 |
retina | 1.32e-09 | 6 |
photoreceptor array | 1.32e-09 | 6 |
posterior segment of eyeball | 1.32e-09 | 6 |
sense organ | 2.35e-09 | 24 |
sensory system | 2.35e-09 | 24 |
entire sense organ system | 2.35e-09 | 24 |
pre-chordal neural plate | 4.61e-08 | 61 |