FFCP PHASE1:Hg19::chr18:20494114..20494129,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:20494114..20494129,+ | |||
|coexpression_cluster_id=C1796 | |||
|description=CAGE_peak_at_chr18:20494114..20494129,+ | |description=CAGE_peak_at_chr18:20494114..20494129,+ | ||
|id=chr18:20494114..20494129,+ | |id=chr18:20494114..20494129,+ | ||
|ontology_enrichment_celltype=CL:0002076!2.14e-27!43;CL:0000223!1.30e-19!59;CL:0000066!1.61e-19!254;CL:0002251!1.98e-13!21;CL:0002368!3.56e-12!13;CL:0002159!7.28e-11!13;CL:0002077!1.81e-07!33;CL:0002202!5.88e-07!9;CL:0002632!5.88e-07!9 | |ontology_enrichment_celltype=CL:0002076!2.14e-27!43;CL:0000223!1.30e-19!59;CL:0000066!1.61e-19!254;CL:0002251!1.98e-13!21;CL:0002368!3.56e-12!13;CL:0002159!7.28e-11!13;CL:0002077!1.81e-07!33;CL:0002202!5.88e-07!9;CL:0002632!5.88e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002076;7.11e-20;42!CL:0002159;7.93e-15;14!CL:0002368;1.15e-12;13!CL:0002251;2.39e-11;20!CL:0000244;3.40e-09;4!CL:0000731;3.40e-09;4!CL:0002166;2.30e-08;3!CL:0002621;5.09e-08;3!CL:0000622;4.19e-07;5!CL:0000307;4.34e-07;3!CL:0002077;6.13e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.60e-24,42;CL:0000223,2.45e-17,58;CL:0000066,1.66e-16,253;CL:0002159,6.89e-15,14;CL:0002368,1.11e-12,13;CL:0002251,2.38e-11,20;CL:0000244,3.87e-09,4;CL:0000731,3.87e-09,4;CL:0002166,2.30e-08,3;CL:0002077,3.81e-08,34;CL:0002621,5.16e-08,3;CL:0000622,4.12e-07,5;CL:0000068,4.93e-07,3;CL:0000069,4.93e-07,3;CL:0000307,4.93e-07,3;CL:0000377,4.93e-07,3;CL:0000076,9.89e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000223;7.46e-10;58!CL:0000377;4.34e-07;3 | |||
|ontology_enrichment_disease=DOID:1749!1.38e-16!14;DOID:305!2.02e-08!106 | |ontology_enrichment_disease=DOID:1749!1.38e-16!14;DOID:305!2.02e-08!106 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.02e-13;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.26e-13,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.31e-21!169;UBERON:0000925!1.31e-21!169;UBERON:0006595!1.31e-21!169;UBERON:0001007!2.05e-16!155;UBERON:0001555!2.05e-16!155;UBERON:0007026!2.05e-16!155;UBERON:0001004!4.71e-16!72;UBERON:0004921!8.33e-13!129;UBERON:0004185!8.33e-13!129;UBERON:0000161!3.53e-12!35;UBERON:0000166!1.29e-11!21;UBERON:0000077!4.89e-10!130;UBERON:0000464!1.76e-09!104;UBERON:0000065!2.40e-09!53;UBERON:0005911!2.91e-09!82;UBERON:0000165!4.65e-09!28;UBERON:0000930!4.65e-09!28;UBERON:0000466!3.58e-08!126;UBERON:0000365!5.16e-08!5;UBERON:0000974!5.16e-08!10;UBERON:0001041!6.66e-08!98;UBERON:0000344!1.22e-07!12;UBERON:0003729!2.12e-07!5;UBERON:0005153!2.91e-07!37;UBERON:0005178!2.94e-07!34;UBERON:0002224!2.94e-07!34;UBERON:0005181!6.30e-07!35 | |ontology_enrichment_uberon=UBERON:0004119!1.31e-21!169;UBERON:0000925!1.31e-21!169;UBERON:0006595!1.31e-21!169;UBERON:0001007!2.05e-16!155;UBERON:0001555!2.05e-16!155;UBERON:0007026!2.05e-16!155;UBERON:0001004!4.71e-16!72;UBERON:0004921!8.33e-13!129;UBERON:0004185!8.33e-13!129;UBERON:0000161!3.53e-12!35;UBERON:0000166!1.29e-11!21;UBERON:0000077!4.89e-10!130;UBERON:0000464!1.76e-09!104;UBERON:0000065!2.40e-09!53;UBERON:0005911!2.91e-09!82;UBERON:0000165!4.65e-09!28;UBERON:0000930!4.65e-09!28;UBERON:0000466!3.58e-08!126;UBERON:0000365!5.16e-08!5;UBERON:0000974!5.16e-08!10;UBERON:0001041!6.66e-08!98;UBERON:0000344!1.22e-07!12;UBERON:0003729!2.12e-07!5;UBERON:0005153!2.91e-07!37;UBERON:0005178!2.94e-07!34;UBERON:0002224!2.94e-07!34;UBERON:0005181!6.30e-07!35 | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;2.47e-11;5!UBERON:0000486;3.33e-11;12!UBERON:0000165;6.43e-10;28!UBERON:0000161;2.19e-09;19!UBERON:0000166;2.19e-09;19!UBERON:0005910;2.32e-09;6!UBERON:0001949;5.09e-08;3!UBERON:0001044;8.87e-08;6!UBERON:0003293;8.87e-08;6!UBERON:0003294;8.87e-08;6!UBERON:0010047;8.87e-08;6!UBERON:0003408;8.87e-08;6!UBERON:0000167;8.87e-08;6!UBERON:0001041;1.00e-07;14!UBERON:0006947;2.83e-07;3!UBERON:0004054;2.83e-07;3!UBERON:0003126;3.16e-07;7!UBERON:0001005;3.16e-07;7!UBERON:0001004;6.83e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,4.26e-16,74;UBERON:0004119,2.54e-15,160;UBERON:0000925,2.54e-15,160;UBERON:0006595,2.54e-15,160;UBERON:0000153,4.65e-12,62;UBERON:0007811,4.65e-12,62;UBERON:0000161,2.62e-11,36;UBERON:0000365,2.78e-11,5;UBERON:0000166,3.33e-11,22;UBERON:0003102,8.54e-11,99;UBERON:0001007,2.93e-10,145;UBERON:0001555,2.93e-10,145;UBERON:0007026,2.93e-10,145;UBERON:0000165,1.90e-09,29;UBERON:0000930,1.90e-09,29;UBERON:0005910,2.56e-09,6;UBERON:0000033,4.94e-09,56;UBERON:0003408,9.49e-09,10;UBERON:0000065,3.80e-08,54;UBERON:0002530,4.56e-08,59;UBERON:0001949,5.16e-08,3;UBERON:0001044,8.74e-08,6;UBERON:0003293,8.74e-08,6;UBERON:0003294,8.74e-08,6;UBERON:0010047,8.74e-08,6;UBERON:0000167,8.74e-08,6;UBERON:0004921,1.92e-07,118;UBERON:0006947,2.77e-07,3;UBERON:0004054,2.77e-07,3;UBERON:0003126,2.87e-07,7;UBERON:0001005,2.87e-07,7;UBERON:0000974,2.98e-07,10 | |||
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| ||
|short_description=p@chr18:20494114..20494129,+ | |short_description=p@chr18:20494114..20494129,+ | ||
}} | }} |
Latest revision as of 23:55, 25 July 2015
Short description: | p@chr18:20494114..20494129, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:20494114..20494129, + |
Coexpression cluster: | C1796_Keratinocyte_Small_Mallassezderived_cervical_Mammary_oral_malignant |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.60e-24 | 42 |
endodermal cell | 2.45e-17 | 58 |
epithelial cell | 1.66e-16 | 253 |
general ecto-epithelial cell | 6.89e-15 | 14 |
respiratory epithelial cell | 1.11e-12 | 13 |
epithelial cell of alimentary canal | 2.38e-11 | 20 |
transitional epithelial cell | 3.87e-09 | 4 |
urothelial cell | 3.87e-09 | 4 |
epithelial cell of Malassez | 2.30e-08 | 3 |
ecto-epithelial cell | 3.81e-08 | 34 |
gingival epithelial cell | 5.16e-08 | 3 |
acinar cell | 4.12e-07 | 5 |
duct epithelial cell | 4.93e-07 | 3 |
branched duct epithelial cell | 4.93e-07 | 3 |
tracheal epithelial cell | 4.93e-07 | 3 |
tracheoblast | 4.93e-07 | 3 |
squamous epithelial cell | 9.89e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
respiratory system | 4.26e-16 | 74 |
endoderm-derived structure | 2.54e-15 | 160 |
endoderm | 2.54e-15 | 160 |
presumptive endoderm | 2.54e-15 | 160 |
anterior region of body | 4.65e-12 | 62 |
craniocervical region | 4.65e-12 | 62 |
orifice | 2.62e-11 | 36 |
urothelium | 2.78e-11 | 5 |
oral opening | 3.33e-11 | 22 |
surface structure | 8.54e-11 | 99 |
digestive system | 2.93e-10 | 145 |
digestive tract | 2.93e-10 | 145 |
primitive gut | 2.93e-10 | 145 |
mouth | 1.90e-09 | 29 |
stomodeum | 1.90e-09 | 29 |
transitional epithelium | 2.56e-09 | 6 |
head | 4.94e-09 | 56 |
gland of gut | 9.49e-09 | 10 |
respiratory tract | 3.80e-08 | 54 |
gland | 4.56e-08 | 59 |
gingival epithelium | 5.16e-08 | 3 |
saliva-secreting gland | 8.74e-08 | 6 |
gland of oral region | 8.74e-08 | 6 |
gland of foregut | 8.74e-08 | 6 |
oral gland | 8.74e-08 | 6 |
oral cavity | 8.74e-08 | 6 |
subdivision of digestive tract | 1.92e-07 | 118 |
male genital duct | 2.77e-07 | 3 |
internal male genitalia | 2.77e-07 | 3 |
trachea | 2.87e-07 | 7 |
respiratory airway | 2.87e-07 | 7 |
neck | 2.98e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.26e-13 | 14 |