FFCP PHASE1:Hg19::chr12:103835454..103835475,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:103835454..103835475,-
|short_description=p4@C12orf42
|description=CAGE_peak_4_at_C12orf42_5end
|association_with_transcript=-81bp_to_ENST00000552977_5end...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=374470 | |EntrezGene=374470 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24729 | |HGNC=24729 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-81bp_to_ENST00000552977_5end | |||
|cluster_id=chr12:103835454..103835475,- | |||
|coexpression_cluster_id=C272 | |||
|description=CAGE_peak_4_at_C12orf42_5end | |||
|id=chr12:103835454..103835475,- | |||
|ontology_enrichment_celltype=CL:0000542!5.71e-49!53;CL:0000051!5.71e-49!53;CL:0000838!1.99e-47!52;CL:0000791!7.26e-27!18;CL:0000789!7.26e-27!18;CL:0002420!7.26e-27!18;CL:0002419!7.26e-27!18;CL:0000790!7.26e-27!18;CL:0000945!3.30e-24!24;CL:0000826!3.30e-24!24;CL:0002087!9.79e-23!119;CL:0000236!2.35e-22!14;CL:0000738!2.47e-21!140;CL:0000084!5.71e-20!25;CL:0000827!5.71e-20!25;CL:0000625!3.73e-19!11;CL:0000037!3.69e-18!172;CL:0000566!3.69e-18!172;CL:0002031!7.24e-18!124;CL:0000988!2.72e-16!182;CL:0002032!6.13e-15!165;CL:0000837!6.13e-15!165;CL:0000624!3.13e-11!6 | |||
|ontology_enrichment_celltype_v019=CL:0000236;3.12e-40;13!CL:0000791;7.29e-31;18!CL:0000789;7.29e-31;18!CL:0002419;7.29e-31;18!CL:0000542;4.46e-28;53!CL:0000625;1.13e-24;11!CL:0000945;6.76e-24;24!CL:0000084;2.28e-21;25!CL:0000898;1.39e-11;3!CL:0000624;4.71e-10;6!CL:0000815;2.79e-08;2!CL:0000792;2.79e-08;2!CL:0002677;2.79e-08;2!CL:0002087;1.66e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,7.33e-44,53;CL:0000051,7.33e-44,53;CL:0000838,1.80e-41,52;CL:0000236,4.65e-37,14;CL:0000791,5.29e-31,18;CL:0000789,5.29e-31,18;CL:0002420,5.29e-31,18;CL:0002419,5.29e-31,18;CL:0000790,5.29e-31,18;CL:0000625,7.42e-25,11;CL:0000945,8.64e-24,24;CL:0000826,8.64e-24,24;CL:0000084,1.82e-21,25;CL:0000827,1.82e-21,25;CL:0002087,3.38e-19,115;CL:0000738,8.48e-18,136;CL:0002031,2.93e-15,120;CL:0000037,3.13e-15,168;CL:0000988,4.67e-14,177;CL:0002032,9.77e-13,161;CL:0000837,9.77e-13,161;CL:0000898,1.47e-11,3;CL:0000624,4.95e-10,6;CL:0000815,2.42e-08,2;CL:0000792,2.42e-08,2;CL:0002677,2.42e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000790;7.29e-31;18!CL:0000051;4.46e-28;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.02e-12!15;UBERON:0000179!2.02e-12!15;UBERON:0000463!2.02e-12!15;UBERON:0007023!1.46e-09!115;UBERON:0004177!2.71e-09!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;2.42e-11;5!UBERON:0005057;2.42e-11;5!UBERON:0000178;1.86e-10;15!UBERON:0000179;1.86e-10;15!UBERON:0000463;1.86e-10;15!UBERON:0002390;1.62e-09;32!UBERON:0002370;1.12e-07;2!UBERON:0005058;1.12e-07;2!UBERON:0009113;1.12e-07;2!UBERON:0002193;2.71e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.80e-12,7;UBERON:0005057,2.80e-12,7;UBERON:0000178,2.03e-10,15;UBERON:0000179,2.03e-10,15;UBERON:0000463,2.03e-10,15;UBERON:0002370,2.63e-08,4;UBERON:0005058,2.63e-08,4;UBERON:0009113,2.63e-08,4;UBERON:0003295,2.63e-08,4;UBERON:0005562,2.63e-08,4 | |||
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| ||
|short_description=p4@C12orf42 | |||
}} | }} |
Latest revision as of 22:42, 15 September 2015
Short description: | p4@C12orf42 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_C12orf42_5end |
Coexpression cluster: | C272_CD19_CD4_CD8_Whole_Peripheral_lymph_tonsil |
Association with transcript: | -81bp_to_ENST00000552977_5end |
EntrezGene: | C12orf42 |
HGNC: | 24729 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 7.33e-44 | 53 |
common lymphoid progenitor | 7.33e-44 | 53 |
lymphoid lineage restricted progenitor cell | 1.80e-41 | 52 |
B cell | 4.65e-37 | 14 |
mature alpha-beta T cell | 5.29e-31 | 18 |
alpha-beta T cell | 5.29e-31 | 18 |
immature T cell | 5.29e-31 | 18 |
mature T cell | 5.29e-31 | 18 |
immature alpha-beta T cell | 5.29e-31 | 18 |
CD8-positive, alpha-beta T cell | 7.42e-25 | 11 |
lymphocyte of B lineage | 8.64e-24 | 24 |
pro-B cell | 8.64e-24 | 24 |
T cell | 1.82e-21 | 25 |
pro-T cell | 1.82e-21 | 25 |
nongranular leukocyte | 3.38e-19 | 115 |
leukocyte | 8.48e-18 | 136 |
hematopoietic lineage restricted progenitor cell | 2.93e-15 | 120 |
hematopoietic stem cell | 3.13e-15 | 168 |
hematopoietic cell | 4.67e-14 | 177 |
hematopoietic oligopotent progenitor cell | 9.77e-13 | 161 |
hematopoietic multipotent progenitor cell | 9.77e-13 | 161 |
naive T cell | 1.47e-11 | 3 |
CD4-positive, alpha-beta T cell | 4.95e-10 | 6 |
regulatory T cell | 2.42e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.42e-08 | 2 |
naive regulatory T cell | 2.42e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 2.80e-12 | 7 |
immune organ | 2.80e-12 | 7 |
blood | 2.03e-10 | 15 |
haemolymphatic fluid | 2.03e-10 | 15 |
organism substance | 2.03e-10 | 15 |
thymus | 2.63e-08 | 4 |
hemolymphoid system gland | 2.63e-08 | 4 |
thymic region | 2.63e-08 | 4 |
pharyngeal gland | 2.63e-08 | 4 |
thymus primordium | 2.63e-08 | 4 |