FFCP PHASE1:Hg19::chr2:238257251..238257273,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:238257251..238257273,+ | |||
|coexpression_cluster_id=C4204 | |||
|description=CAGE_peak_at_chr2:238257251..238257273,+ | |description=CAGE_peak_at_chr2:238257251..238257273,+ | ||
|id=chr2:238257251..238257273,+ | |id=chr2:238257251..238257273,+ | ||
|ontology_enrichment_celltype=CL:0000055!9.79e-30!180;CL:0000057!4.74e-26!75;CL:0000048!4.32e-14!430;CL:0002620!1.15e-13!23;CL:0000723!2.77e-13!436;CL:0000034!2.96e-12!444;CL:0000183!1.30e-10!59;CL:0000680!2.51e-10!57;CL:0000056!2.51e-10!57;CL:0000355!2.51e-10!57;CL:0000187!5.14e-10!54;CL:0002320!3.98e-09!365;CL:0000393!5.15e-08!60;CL:0000211!5.15e-08!60;CL:0002334!6.95e-08!12;CL:0002371!2.90e-07!591;CL:0000188!5.41e-07!9;CL:0000134!6.43e-07!358 | |ontology_enrichment_celltype=CL:0000055!9.79e-30!180;CL:0000057!4.74e-26!75;CL:0000048!4.32e-14!430;CL:0002620!1.15e-13!23;CL:0000723!2.77e-13!436;CL:0000034!2.96e-12!444;CL:0000183!1.30e-10!59;CL:0000680!2.51e-10!57;CL:0000056!2.51e-10!57;CL:0000355!2.51e-10!57;CL:0000187!5.14e-10!54;CL:0002320!3.98e-09!365;CL:0000393!5.15e-08!60;CL:0000211!5.15e-08!60;CL:0002334!6.95e-08!12;CL:0002371!2.90e-07!591;CL:0000188!5.41e-07!9;CL:0000134!6.43e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000723;4.68e-10;61!CL:0000188;2.74e-09;9!CL:0002620;4.62e-09;23!CL:0000134;9.26e-09;55!CL:0000048;2.18e-08;58!CL:0000499;4.07e-08;28!CL:0002570;1.31e-07;8!CL:0000034;3.28e-07;69!CL:0002564;5.17e-07;3!CL:0000153;8.63e-07;9!CL:0000447;8.63e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.19e-12,76;CL:0000048,1.18e-09,427;CL:0000188,2.22e-09,9;CL:0000723,3.08e-09,433;CL:0002320,3.51e-09,361;CL:0002620,6.86e-09,23;CL:0000034,1.06e-08,441;CL:0000499,2.81e-08,28;CL:0002570,1.29e-07,8;CL:0002564,5.31e-07,3;CL:0000153,7.00e-07,9;CL:0000447,7.00e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.79e-14!83;UBERON:0002329!1.79e-14!83;UBERON:0003077!1.79e-14!83;UBERON:0003059!1.79e-14!83;UBERON:0007282!1.79e-14!83;UBERON:0009618!1.79e-14!83;UBERON:0007285!1.79e-14!83;UBERON:0004290!1.81e-12!70;UBERON:0003102!2.05e-12!95;UBERON:0002199!2.12e-11!45;UBERON:0002416!2.12e-11!45;UBERON:0000486!2.72e-10!82;UBERON:0005256!1.02e-09!143;UBERON:0002385!1.11e-09!63;UBERON:0001015!1.11e-09!63;UBERON:0000383!1.11e-09!63;UBERON:0001134!1.14e-09!61;UBERON:0002036!1.14e-09!61;UBERON:0003082!1.14e-09!61;UBERON:0002384!1.97e-09!375;UBERON:0002097!2.90e-09!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;4.76e-11;8!UBERON:0000982;4.76e-11;8!UBERON:0004770;4.76e-11;8!UBERON:0011135;2.75e-10;5!UBERON:0002216;2.75e-10;5!UBERON:0011134;2.75e-10;5!UBERON:0002209;2.75e-10;5!UBERON:0002213;2.75e-10;5!UBERON:0007844;2.75e-10;5!UBERON:0011138;2.75e-10;5!UBERON:0001130;2.75e-10;5!UBERON:0001066;2.75e-10;5!UBERON:0001468;2.75e-10;5!UBERON:0002199;7.24e-08;46!UBERON:0002416;7.24e-08;46!UBERON:0002242;5.17e-07;3!UBERON:0003102;8.60e-07;50!UBERON:0001013;9.00e-07;14!UBERON:0002097;9.66e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,1.09e-11,46;UBERON:0002416,1.09e-11,46;UBERON:0004905,1.73e-11,8;UBERON:0000982,1.73e-11,8;UBERON:0004770,1.73e-11,8;UBERON:0011135,2.41e-10,5;UBERON:0002216,2.41e-10,5;UBERON:0011134,2.41e-10,5;UBERON:0002209,2.41e-10,5;UBERON:0002213,2.41e-10,5;UBERON:0005856,2.41e-10,5;UBERON:0005866,2.41e-10,5;UBERON:0005863,2.41e-10,5;UBERON:0007844,2.41e-10,5;UBERON:0011138,2.41e-10,5;UBERON:0001130,2.41e-10,5;UBERON:0001066,2.41e-10,5;UBERON:0001468,2.41e-10,5;UBERON:0003102,9.54e-10,99;UBERON:0002384,2.18e-09,371;UBERON:0002097,2.23e-08,41;UBERON:0003104,1.76e-07,160;UBERON:0009142,1.76e-07,160;UBERON:0002242,5.31e-07,3;UBERON:0003068,5.31e-07,3;UBERON:0002328,5.31e-07,3;UBERON:0004880,5.31e-07,3;UBERON:0001013,5.76e-07,14 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.140954404095971,0,1.34088328328186,0,0,1.89515962028049,1.82829939739887,0,0,0.436882744260345,0,2.47532705920093,2.98257638155124,0.672325146451775,0,1.46062018077475,0.975865597581014,0.123121058076788,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,0.255725123687061,3.97583067623023,1.00267582127178,3.0417768981773,0,2.43317435151318,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0.506522046658319,0.529636723252875,6.3104056564739,1.06400514659507,0,0,0.49333509683432,0,0.67355336034844,0.653847612453835,0.605429710579726,1.15235184896,0,1.24864030732128,0,1.94283284717341,0.587172493218824,0.971237666208789,0.702254033511242,0.61246251376468,1.35117749042945,1.23990937410919,0,1.97813543422845,0,0,0.505008341862199,0.750711119231785,0.277064115484183,0,0.612975591598039,0.600952235626387,0.113432183160021,6.27863724911017,1.06778694409284,0.847727604638247,6.90209520994125,0.412210116953756,5.92573242104947,1.11670113798954,2.86919764810153,0.487185025805993,6.56327813034698,0.368199594569197,0,5.32514388774922,1.0075209822764,1.52604533079439,0,0,0,0,0,0,0,0,0,1.56449532329816,2.57296375277154,0,1.39310378409594,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,2.94017422771084,0,0,0,0,0,0.171567810298526,0,0,0,0,0.651616610620649,1.03993478527958,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,1.71072446022705,0,0,0,0.112131084345361,0,0.51336800074665,0.258543431515556,0,7.607724773004,1.06375246633948,1.04007436911366,0.257207374262142,2.83698264046557,1.3321108950805,2.28764789853036,3.25572963234866,1.64648067356154,1.95441710576241,1.42156779497018,1.58390374586686,0,0,0,0,0,0,0.479249710983165,3.44585807502342,0,0.434343920002738,0.410952645100767,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0,0,0,0,0,2.4538298343828,7.00238729483548,4.6115054028955,5.19927153827018,4.28229573113188,1.41932173530541,0.937131319941706,0.300946099727719,0,1.03473071292505,1.32845119707087,0.553107505625109,0.695068915744663,1.56640925970192,1.02943027143257,0,0,0,0,0,0,0.496215615637554,0.920771839728375,1.12264037773229,0.512556597022804,0.511707249066704,0.64341568457443,0,3.39261326365842,1.59805552781814,1.64254312027618,5.19254429183621,2.78904908303902,0,0,0,1.7222167224691,4.00600569614778,2.88473712910733,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,1.6068392984416,2.99679226705578,1.23238893691716,1.68854042198743,0.827019434907183,2.68550612170684,3.0453505721988,1.44885266607372,4.09547363974992,0,0,0,0,0,7.55549632393536,0,0,0.532306030317022,0,0,0,0.744316738719335,0,0,0.255897791311334,0.855877976067841,0.318203247925937,0.78494864019923,0.539617372749944,0.274537029736055,0.353437207037059,0,0,0,0,0.974853958525138,0,3.41249778519964,5.23200098228737,2.26016233240486,0,1.99031692572366,0,0.578775534266688,1.9676842561399,0,0.30982349809975,0.563391205064483,0.143411352204052,0.392996164052485,0,0,1.89996871767898,1.97576935775941,0,1.39973888097993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0.597743964753209,0.276283915531148,0,0.102268682502155,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0.859930162358083,0,0,0,0,0,0.451961481561065,1.23337732182076,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,1.01998217636322,0,0,0,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0,0.201550417460179,1.44119953416961,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,1.42939065274673,1.98627591109629,0,0,0,2.28611152076586,0,0,0.340776043570843,0,0,1.32506888912221,0,0,0,0,0,0,0.828478110694391,0.496166021811951,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705797459094515,0,0,1.34329322598187,1.40227985908335,1.10961172300523,1.89403005275089,2.26411111577318,0.889811221596536,0.228840068396924,1.20984739010591,0.466311601748341,0.443565449968902,0.477890301491107,0,0.155262956876259,1.24411862352257,1.86089200190596,1.5652351854352,0.450772826991655,0.380805212168795,0,0.363697318405119,0.107410557042488,0,1.19428766609585,0,3.43395705182793,0.673498977531838,0,0,0,0,0,1.15761237161917,0,0,0,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0.982829546539238,0,0,0.19998739585493,0,0,0.567515953566836,0.552317850755522,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1160556621441,2.1437183414724,0,0,0,0,0,0,0,0,0,0,0,0,0.762764190934334,0,0.198916222116275,0.150420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| ||
|short_description=p@chr2:238257251..238257273,+ | |short_description=p@chr2:238257251..238257273,+ | ||
}} | }} |
Latest revision as of 08:10, 29 July 2015
Short description: | p@chr2:238257251..238257273, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:238257251..238257273, + |
Coexpression cluster: | C4204_Skeletal_tenocyte_Fibroblast_Smooth_Olfactory_Nucleus_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.19e-12 | 76 |
multi fate stem cell | 1.18e-09 | 427 |
cell of skeletal muscle | 2.22e-09 | 9 |
somatic stem cell | 3.08e-09 | 433 |
connective tissue cell | 3.51e-09 | 361 |
skin fibroblast | 6.86e-09 | 23 |
stem cell | 1.06e-08 | 441 |
stromal cell | 2.81e-08 | 28 |
mesenchymal stem cell of adipose | 1.29e-07 | 8 |
nucleus pulposus cell of intervertebral disc | 5.31e-07 | 3 |
GAG secreting cell | 7.00e-07 | 9 |
carbohydrate secreting cell | 7.00e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
integument | 1.09e-11 | 46 |
integumental system | 1.09e-11 | 46 |
articulation | 1.73e-11 | 8 |
skeletal joint | 1.73e-11 | 8 |
articular system | 1.73e-11 | 8 |
intervertebral cartilage | 2.41e-10 | 5 |
symphysis | 2.41e-10 | 5 |
nonsynovial joint | 2.41e-10 | 5 |
fibrous joint | 2.41e-10 | 5 |
cartilaginous joint | 2.41e-10 | 5 |
developing mesenchymal condensation | 2.41e-10 | 5 |
pre-cartilage condensation | 2.41e-10 | 5 |
cartilaginous condensation | 2.41e-10 | 5 |
cartilage element | 2.41e-10 | 5 |
post-cranial axial skeletal system | 2.41e-10 | 5 |
vertebral column | 2.41e-10 | 5 |
intervertebral disk | 2.41e-10 | 5 |
intervertebral joint | 2.41e-10 | 5 |
surface structure | 9.54e-10 | 99 |
connective tissue | 2.18e-09 | 371 |
skin of body | 2.23e-08 | 41 |
mesenchyme | 1.76e-07 | 160 |
entire embryonic mesenchyme | 1.76e-07 | 160 |
nucleus pulposus | 5.31e-07 | 3 |
axial mesoderm | 5.31e-07 | 3 |
notochord | 5.31e-07 | 3 |
chordamesoderm | 5.31e-07 | 3 |
adipose tissue | 5.76e-07 | 14 |