FFCP PHASE1:Hg19::chr2:44502612..44502625,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6519 | |EntrezGene=6519 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11025 | |HGNC=11025 | ||
|TSSclassifier=strong | |||
|UniProt=G3V1I5 | |UniProt=G3V1I5 | ||
|association_with_transcript=0bp_to_ENST00000540334_5end | |association_with_transcript=0bp_to_ENST00000540334_5end | ||
|cluster_id=chr2:44502612..44502625,+ | |||
|coexpression_cluster_id=C51 | |||
|description=CAGE_peak_1_at_SLC3A1_5end | |description=CAGE_peak_1_at_SLC3A1_5end | ||
|id=chr2:44502612..44502625,+ | |id=chr2:44502612..44502625,+ | ||
|ontology_enrichment_celltype=CL:1000497!3.26e-09!18;CL:0002518!3.26e-09!18;CL:1000507!2.46e-07!12;CL:1000494!2.46e-07!12 | |ontology_enrichment_celltype=CL:1000497!3.26e-09!18;CL:0002518!3.26e-09!18;CL:1000507!2.46e-07!12;CL:1000494!2.46e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;7.78e-08;12!CL:0000313;6.12e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,7.93e-08,12;CL:0000313,5.78e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0003104;1.16e-13;31!UBERON:0003918;8.28e-10;10!UBERON:0007687;8.28e-10;10!UBERON:0006242;3.01e-07;1!UBERON:0003124;9.45e-07;1 | |||
|ontology_enrichment_disease=DOID:299!1.95e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.10e-07;25!DOID:2152;6.12e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:299,1.04e-07,25;DOID:2152,5.78e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000160!1.40e-20!27;UBERON:0005409!8.72e-18!35;UBERON:0000059!5.47e-16!11;UBERON:0005172!3.87e-14!55;UBERON:0005173!3.87e-14!55;UBERON:0002417!2.24e-12!61;UBERON:0000916!2.24e-12!61;UBERON:0002113!2.98e-12!27;UBERON:0003918!2.98e-12!27;UBERON:0005095!2.98e-12!27;UBERON:0007687!2.98e-12!27;UBERON:0000489!4.56e-12!32;UBERON:0004907!6.11e-12!5;UBERON:0004921!8.73e-11!129;UBERON:0004185!8.73e-11!129;UBERON:0005177!1.65e-10!107;UBERON:0001155!1.91e-10!9;UBERON:0006554!9.80e-10!44;UBERON:0001008!1.83e-09!45;UBERON:0001007!5.11e-09!155;UBERON:0001555!5.11e-09!155;UBERON:0007026!5.11e-09!155;UBERON:0001052!5.93e-09!4;UBERON:0004119!1.16e-08!169;UBERON:0000925!1.16e-08!169;UBERON:0006595!1.16e-08!169;UBERON:0009773!2.46e-07!12;UBERON:0001231!2.46e-07!12;UBERON:0004810!2.46e-07!12;UBERON:0006555!3.26e-07!17;UBERON:0005103!3.26e-07!17;UBERON:0000083!3.26e-07!17;UBERON:0009201!3.26e-07!17;UBERON:0004819!3.26e-07!17;UBERON:0006553!3.26e-07!17;UBERON:0003074!3.26e-07!17;UBERON:0003060!3.26e-07!17;UBERON:0000080!8.90e-07!18;UBERON:0002120!8.90e-07!18;UBERON:0004875!8.90e-07!18;UBERON:0005721!8.90e-07!18;UBERON:0005754!8.90e-07!18;UBERON:0007297!8.90e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.69e-24;17!UBERON:0005409;7.49e-19;22!UBERON:0000059;1.09e-12;11!UBERON:0002108;2.11e-11;4!UBERON:0004921;5.64e-11;33!UBERON:0001155;2.41e-10;9!UBERON:0002423;8.73e-08;25!UBERON:0002107;2.22e-07;19!UBERON:0006925;2.22e-07;19!UBERON:0005172;2.77e-07;52!UBERON:0005173;2.77e-07;52!UBERON:0001301;4.06e-07;1!UBERON:0004911;6.12e-07;1!UBERON:0006834;7.73e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.55e-24,17;UBERON:0005409,1.57e-16,25;UBERON:0005172,4.09e-13,54;UBERON:0005173,4.09e-13,54;UBERON:0000059,1.01e-12,11;UBERON:0002417,1.43e-11,60;UBERON:0000916,1.43e-11,60;UBERON:0002108,2.11e-11,4;UBERON:0001155,2.26e-10,9;UBERON:0005177,2.18e-08,101;UBERON:0009497,8.96e-08,25;UBERON:0000015,8.96e-08,25;UBERON:0002423,8.96e-08,25;UBERON:0006235,8.96e-08,25;UBERON:0004161,8.96e-08,25;UBERON:0002113,1.33e-07,26;UBERON:0003918,1.33e-07,26;UBERON:0011143,1.33e-07,26;UBERON:0005095,1.33e-07,26;UBERON:0007687,1.33e-07,26;UBERON:0002107,2.29e-07,19;UBERON:0006925,2.29e-07,19;UBERON:0008836,2.29e-07,19;UBERON:0001301,3.82e-07,1;UBERON:0004911,5.78e-07,1;UBERON:0006834,7.73e-07,1 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,114.54120152275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,9.82827216677626,8.27105869353966,0,14.5126357480874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0.308061348417659,0.784349769176855,0,1.47772280450026,0,0,0,0,0,0,0.764628819135115,0.831076008928724,0,0,0,0.512900250232778,0,0,4.73988653579522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.08376524194607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,8.43992258112108,0,1.69623685720729,0,3.98104772431402,59.7088560397539,31.1625373916149,0,0,0,0,0,0,0,0,0,0,30.247679012166,0,0,0,0,0,0,0,0,5.40758137456606,0,0,0,0,9.95942008979572,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,41.6233339741738,0,0.288180834308212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,87.2067486220674,0,0,0,0,0,0,0,0,0,0,364.161173429595,137.640839266235,0,0,0,0,0,0,0,0,0,0,0,0,0,9.81899965643152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,112.490026660109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,61.7396068874143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06442844195167,0,0,0,0,0,0,0,0,1.40136081656895,0.913158720509496,70.6083223284892,7.16627531830575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.59277158988962,0,216.404316843528,0,0,0,0,0,0,0,0,0,0,134.360209265932,56.169807049517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,57.1348987756633,0,0,0,0,0,0,0,0,0,0,0.757786982182394,0,0,0,0,0,0,0.186224142887574,0,0,0,0,0,0,0,0.332660356546013,0,0,0,7.81479258327306,0,2.44482888365733,0.813792356631477,0,0,0 | |phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,114.54120152275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,9.82827216677626,8.27105869353966,0,14.5126357480874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0.308061348417659,0.784349769176855,0,1.47772280450026,0,0,0,0,0,0,0.764628819135115,0.831076008928724,0,0,0,0.512900250232778,0,0,4.73988653579522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.08376524194607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,8.43992258112108,0,1.69623685720729,0,3.98104772431402,59.7088560397539,31.1625373916149,0,0,0,0,0,0,0,0,0,0,30.247679012166,0,0,0,0,0,0,0,0,5.40758137456606,0,0,0,0,9.95942008979572,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,41.6233339741738,0,0.288180834308212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,87.2067486220674,0,0,0,0,0,0,0,0,0,0,364.161173429595,137.640839266235,0,0,0,0,0,0,0,0,0,0,0,0,0,9.81899965643152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,112.490026660109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,61.7396068874143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06442844195167,0,0,0,0,0,0,0,0,1.40136081656895,0.913158720509496,70.6083223284892,7.16627531830575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.59277158988962,0,216.404316843528,0,0,0,0,0,0,0,0,0,0,134.360209265932,56.169807049517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,57.1348987756633,0,0,0,0,0,0,0,0,0,0,0.757786982182394,0,0,0,0,0,0,0.186224142887574,0,0,0,0,0,0,0,0.332660356546013,0,0,0,7.81479258327306,0,2.44482888365733,0.813792356631477,0,0,0 | ||
|short_description=p1@SLC3A1 | |short_description=p1@SLC3A1 | ||
}} | }} |
Latest revision as of 08:52, 17 September 2015
Short description: | p1@SLC3A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC3A1_5end |
Coexpression cluster: | C51_kidney_mesothelioma_renal_signet_gall_lung_pancreas |
Association with transcript: | 0bp_to_ENST00000540334_5end |
EntrezGene: | SLC3A1 |
HGNC: | 11025 |
UniProt: | G3V1I5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 7.93e-08 | 12 |
serous secreting cell | 5.78e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.55e-24 | 17 |
gastrointestinal system | 1.57e-16 | 25 |
abdomen element | 4.09e-13 | 54 |
abdominal segment element | 4.09e-13 | 54 |
large intestine | 1.01e-12 | 11 |
abdominal segment of trunk | 1.43e-11 | 60 |
abdomen | 1.43e-11 | 60 |
small intestine | 2.11e-11 | 4 |
colon | 2.26e-10 | 9 |
trunk region element | 2.18e-08 | 101 |
epithelium of foregut-midgut junction | 8.96e-08 | 25 |
anatomical boundary | 8.96e-08 | 25 |
hepatobiliary system | 8.96e-08 | 25 |
foregut-midgut junction | 8.96e-08 | 25 |
septum transversum | 8.96e-08 | 25 |
kidney | 1.33e-07 | 26 |
kidney mesenchyme | 1.33e-07 | 26 |
upper urinary tract | 1.33e-07 | 26 |
kidney rudiment | 1.33e-07 | 26 |
kidney field | 1.33e-07 | 26 |
liver | 2.29e-07 | 19 |
digestive gland | 2.29e-07 | 19 |
liver bud | 2.29e-07 | 19 |
epididymis | 3.82e-07 | 1 |
epithelium of female gonad | 5.78e-07 | 1 |
uterus or analog | 7.73e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 1.04e-07 | 25 |
ovary epithelial cancer | 5.78e-07 | 1 |