FFCP PHASE1:Hg19::chr2:65216084..65216102,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6509 | |EntrezGene=6509 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10942 | |HGNC=10942 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-353bp_to_uc010fcv.2,uc010yqa.1_5end | |association_with_transcript=-353bp_to_uc010fcv.2,uc010yqa.1_5end | ||
|cluster_id=chr2:65216084..65216102,+ | |||
|description=CAGE_peak_6_at_SLC1A4_5end | |description=CAGE_peak_6_at_SLC1A4_5end | ||
|id=chr2:65216084..65216102,+ | |id=chr2:65216084..65216102,+ | ||
|ontology_enrichment_celltype=CL:0000148!9.65e-07!10;CL:0000541!9.65e-07!10 | |ontology_enrichment_celltype=CL:0000148!9.65e-07!10;CL:0000541!9.65e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000148;3.48e-20;10!CL:0002567;3.11e-18;3!CL:0000147;3.00e-14;14!CL:0000710;8.69e-10;20!CL:0000075;4.37e-07;27!CL:0002566;4.54e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.03e-20,10;CL:0000541,3.03e-20,10;CL:0002567,2.80e-18,3;CL:0000147,2.72e-14,14;CL:0000710,8.13e-10,20;CL:0000075,4.17e-07,27;CL:0002566,4.18e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:3371,5.57e-07,1;DOID:4549,5.57e-07,1;DOID:5861,5.57e-07,1;DOID:6496,5.57e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.87e-15!94;UBERON:0001016!1.87e-15!94;UBERON:0001017!2.95e-15!82;UBERON:0005743!3.44e-15!86;UBERON:0002616!5.58e-15!59;UBERON:0000955!9.24e-15!69;UBERON:0006238!9.24e-15!69;UBERON:0001049!1.12e-14!57;UBERON:0005068!1.12e-14!57;UBERON:0006241!1.12e-14!57;UBERON:0007135!1.12e-14!57;UBERON:0002346!4.98e-12!90;UBERON:0003080!6.70e-12!42;UBERON:0003075!1.32e-11!86;UBERON:0007284!1.32e-11!86;UBERON:0001893!2.57e-11!34;UBERON:0002780!3.03e-11!41;UBERON:0001890!3.03e-11!41;UBERON:0006240!3.03e-11!41;UBERON:0002791!6.93e-11!33;UBERON:0001869!1.05e-10!32;UBERON:0002020!2.95e-10!34;UBERON:0003528!2.95e-10!34;UBERON:0002619!1.12e-08!22;UBERON:0003056!1.84e-08!61;UBERON:0000956!2.27e-08!25;UBERON:0000203!2.27e-08!25;UBERON:0000033!2.74e-08!123;UBERON:0000153!2.91e-08!129;UBERON:0007811!2.91e-08!129;UBERON:0000924!9.19e-08!173;UBERON:0006601!9.19e-08!173;UBERON:0004121!2.20e-07!169;UBERON:0001950!2.65e-07!20;UBERON:0007023!4.37e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001954;1.01e-11;2!UBERON:0003022;1.01e-11;2!UBERON:0002421;1.01e-11;2!UBERON:0002600;1.01e-11;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001954,5.23e-12,2;UBERON:0003022,5.23e-12,2;UBERON:0002421,5.23e-12,2;UBERON:0002600,5.23e-12,2;UBERON:0003112,9.79e-07,1;UBERON:0011158,9.79e-07,1;UBERON:0003128,9.79e-07,1;UBERON:0001703,9.79e-07,1;UBERON:0002241,9.79e-07,1;UBERON:0004761,9.79e-07,1;UBERON:0009617,9.79e-07,1 | |||
|phase1_expression=0.181678379270557,0,0.281908808191942,0,0,0,0,0,0,0,0,0.218441372130172,0,0.247532705920093,0,0,0,0,0,0.61560529038394,0,0.940364164434263,0,0.273748850145768,0.125542639594803,0.0764134057479513,0,0.314843125254717,0,0,0.154816123316076,0,0,0,0.232401601740905,0.142169232487422,0.293600439334847,1.10799081706375,0,0,0,0,0.257575567634187,0.436194716338694,0,0,0.464858073811369,0.822335776043652,0.309706370895104,0.28769239232215,0,0.47296445977717,0.689491361473237,0,0,0,0,0.449446968890169,0.612167784741805,0,0,0.329851300186716,0,0.852449501065388,1.16083695451434,0,0,0.251248665256743,0,0,0,0,0,0.211255286311942,0,0,0.112328631146495,0,0.16072558669708,0.570025487482497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0.25618263945135,0.130059347559878,0.328875809207352,0,0.289803085735052,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0.50133791063589,0.434539556882471,0,0.486634870302636,0.189069634328136,0.221729397462564,0,0.130979075497713,0,0,0,0.174129737299267,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0.488124115096339,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,1.12135520028461,0,0.24666754841716,0,0.134710672069688,0,0.605429710579726,0.576175924479999,0.234321431833797,0,0,0.149448680551801,0,0,0,0,0,0,0,0.247266929278557,1.82032272387605,0.718618141816238,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0,0.600182192168805,0.103052529238439,0.257640540045629,0,0,0.292311015483596,0,0.0920498986422993,0.323292113637624,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0.252320850875628,0,1.56449532329816,0,0,0,0,0,0,0,0,0.217879444092406,0.237270619111097,0,0,0,0,1.40241773803446,0,0,2.53510069643662,0,0,0.441463099414651,0,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,0,0,0,0.231860809950154,0.469634776943287,0,0,0.570762456703795,0,0,0.492434012174795,1.40402559083543,1.63494278517601,0,0.16798212819886,0,0.0895585227028483,0,0.383382679165211,0,0.264145302039678,0.829312462163088,0.576479813667846,1.38866676769018,2.79390734885544,9.16772221339866,3.51652341630141,3.4214489204541,1.23392991243988,0.300343057843917,3.42991719156694,0.224262168690721,0,0,0.258543431515556,0,0,0.531876233169741,0,1.02882949704857,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0.239624855491583,1.14861935834114,0,0,0,0,0.448340575974109,0,0,0.128343036279748,0.76228387266739,0,0.773288812777695,1.00509759200609,0.637938751653163,0,0,0,0.12269149171914,0,0.271265023699736,0.623912584592421,0.356857977594324,0,0.117141414992713,0.601892199455438,0,1.03473071292505,0.664225598535437,0.368738337083406,0.0868836144680828,0.195801157462741,0.686286847621712,0,0.215714200818617,0,0.303127571446259,1.66435439510497,0,0,0,0.280660094433074,0.384417447767103,0,0.160853921143607,0,0.308419387605311,0,0,0,0.116210378459959,0,0.200506470303285,0,0.114814448164607,0,0.262248829918848,0,0.0770153371044148,0,0,0,3.4120015221269,0,0,0,0,0,0,0,0.223874754722178,0,0,0.256450125116389,0,0,0.412164046590889,0.0915694648183434,0,0,0,0,0.193341436584244,0.462145851343933,0,0,0.107420244868274,0,0.0852266274161009,0.0890320356467374,0,0,0,0.809262246844399,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0.196498082026242,1.07001315444375,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.188287601553558,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0.962479855263359,0,0,0,0,0,0,0,0.423347165447766,0,0,0,0,0,0.169291777801603,0.1605880751037,0.201799707191048,0.425846237690326,1.03051603426729,0.307240764308458,0.223676107892416,0.166849141711909,0.19538809540204,0,0,0,0,0,0.18714054040822,0.293016358543788,0.242721043499027,0.445773537109913,0.284136146806413,0,0,0,0,0.703347082052564,0,0.329607748453519,0,0.19924798825107,0,0,0.20453736500431,0,0,0,0.179021174675609,0,0.0986434056369336,0,0,0.969332746095218,0.463840490809256,0,0,0.349839999984783,1.44999915086959,0,0.254253650292766,0,0,0,0,0,0.482385754501632,3.05163472634166,0.995213339381022,0.591095237907095,0.87754158861589,0.32681539055697,0.278847488557207,0.384751292518985,0.113942055847001,0.23056390438806,0,0,0,0.0915975934018623,0,0,0.31396051279005,0,0,0.19606253431774,0.167821586975843,0.189753732724185,0,0,0.163232808159148,0,0,0,0.0884575645033392,0.611030144933625,0,0.370691816839509,0.104421949505455,0.539209063845416,0,0.468528891450678,0,0.391329237864179,0,0,0,0.30607276163049,0.31593289814244,0.450970258243478,0,0,0.330991955875499,0,0,0,0,0,0,0.0870592065804026,0,0,0,0.0730893170861856,0.0821154570532092,0.193978032976839,1.76512253383001,0.225980740780532,0,0,0.379864775735272,0,0.0801588202515337,0.213452994739353,0,0.144090417154106,0,0.171594997861965,0.14405479798815,0.124252535565433,0.471388069233591,0.135904206073614,0.104602846312333,0.305994652908965,0,0.600420288709789,0.273810757783986,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| ||
|short_description=p6@SLC1A4 | |short_description=p6@SLC1A4 | ||
}} | }} |
Latest revision as of 00:17, 18 September 2015
Short description: | p6@SLC1A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SLC1A4_5end |
Coexpression cluster: | NA |
Association with transcript: | -353bp_to_uc010fcv.2, uc010yqa.1_5end |
EntrezGene: | SLC1A4 |
HGNC: | 10942 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.03e-20 | 10 |
melanoblast | 3.03e-20 | 10 |
light melanocyte | 2.80e-18 | 3 |
pigment cell | 2.72e-14 | 14 |
neurecto-epithelial cell | 8.13e-10 | 20 |
columnar/cuboidal epithelial cell | 4.17e-07 | 27 |
dark melanocyte | 4.18e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
Ammon's horn | 5.23e-12 | 2 |
lobe parts of cerebral cortex | 5.23e-12 | 2 |
hippocampal formation | 5.23e-12 | 2 |
limbic lobe | 5.23e-12 | 2 |
olfactory region | 9.79e-07 | 1 |
primary subdivision of skull | 9.79e-07 | 1 |
cranium | 9.79e-07 | 1 |
neurocranium | 9.79e-07 | 1 |
chondrocranium | 9.79e-07 | 1 |
cartilaginous neurocranium | 9.79e-07 | 1 |
head paraxial mesoderm | 9.79e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 5.57e-07 | 1 |
extraosseous chondrosarcoma | 5.57e-07 | 1 |
myxoid chondrosarcoma | 5.57e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 5.57e-07 | 1 |