FFCP PHASE1:Hg19::chr2:69741788..69741801,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:69741788..69741801,- | |||
|coexpression_cluster_id=C1678 | |||
|description=CAGE_peak_at_chr2:69741788..69741801,- | |description=CAGE_peak_at_chr2:69741788..69741801,- | ||
|id=chr2:69741788..69741801,- | |id=chr2:69741788..69741801,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;2.19e-12;3!UBERON:0003057;2.19e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.70e-26!57;UBERON:0005068!7.70e-26!57;UBERON:0006241!7.70e-26!57;UBERON:0007135!7.70e-26!57;UBERON:0002619!1.45e-21!22;UBERON:0002020!1.58e-21!34;UBERON:0003528!1.58e-21!34;UBERON:0001893!2.47e-21!34;UBERON:0001950!2.85e-21!20;UBERON:0002616!6.47e-21!59;UBERON:0002780!2.12e-20!41;UBERON:0001890!2.12e-20!41;UBERON:0006240!2.12e-20!41;UBERON:0002791!6.25e-20!33;UBERON:0000955!6.46e-20!69;UBERON:0006238!6.46e-20!69;UBERON:0003080!9.68e-20!42;UBERON:0007023!2.21e-19!115;UBERON:0001017!4.28e-19!82;UBERON:0001869!1.07e-18!32;UBERON:0000956!2.00e-18!25;UBERON:0000203!2.00e-18!25;UBERON:0005743!1.04e-17!86;UBERON:0000073!4.98e-16!94;UBERON:0001016!4.98e-16!94;UBERON:0003075!8.99e-14!86;UBERON:0007284!8.99e-14!86;UBERON:0002346!9.67e-13!90;UBERON:0000200!1.69e-11!6;UBERON:0003056!2.24e-11!61;UBERON:0001872!1.82e-09!5;UBERON:0002298!7.15e-09!8;UBERON:0000033!6.92e-08!123;UBERON:0000153!1.16e-07!129;UBERON:0007811!1.16e-07!129;UBERON:0003076!2.76e-07!15;UBERON:0003057!2.76e-07!15;UBERON:0000988!5.11e-07!3;UBERON:0006331!9.30e-07!3;UBERON:0002771!9.83e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;5.84e-50;6!UBERON:0001896;5.59e-45;3!UBERON:0005290;5.59e-45;3!UBERON:0004733;1.73e-25;12!UBERON:0002028;1.73e-25;12!UBERON:0004732;1.34e-23;13!UBERON:0002148;1.07e-17;2!UBERON:0006331;1.07e-17;2!UBERON:0009662;1.07e-17;2!UBERON:0002240;2.19e-12;3!UBERON:0005174;2.19e-12;3!UBERON:0001137;2.19e-12;3!UBERON:0000988;2.89e-12;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,4.55e-50,6;UBERON:0001896,5.00e-45,3;UBERON:0005290,5.00e-45,3;UBERON:0010096,5.00e-45,3;UBERON:0003076,1.04e-35,15;UBERON:0003057,1.04e-35,15;UBERON:0004733,1.53e-25,12;UBERON:0002028,1.53e-25,12;UBERON:0007277,1.53e-25,12;UBERON:0004732,1.19e-23,13;UBERON:0002148,9.07e-18,2;UBERON:0006331,9.07e-18,2;UBERON:0009662,9.07e-18,2;UBERON:0002240,2.31e-12,3;UBERON:0005174,2.31e-12,3;UBERON:0001137,2.31e-12,3;UBERON:0000988,2.59e-12,3;UBERON:0001049,7.01e-10,56;UBERON:0005068,7.01e-10,56;UBERON:0006241,7.01e-10,56;UBERON:0007135,7.01e-10,56;UBERON:0001017,6.13e-07,81;UBERON:0003075,6.13e-07,82;UBERON:0007284,6.13e-07,82 | |||
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| ||
|short_description=p@chr2:69741788..69741801,- | |short_description=p@chr2:69741788..69741801,- | ||
}} | }} |
Latest revision as of 11:44, 29 July 2015
Short description: | p@chr2:69741788..69741801, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:69741788..69741801, - |
Coexpression cluster: | C1678_medulla_spinal_locus_pons_corpus_globus_thalamus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brainstem | 4.55e-50 | 6 |
medulla oblongata | 5.00e-45 | 3 |
myelencephalon | 5.00e-45 | 3 |
future myelencephalon | 5.00e-45 | 3 |
posterior neural tube | 1.04e-35 | 15 |
chordal neural plate | 1.04e-35 | 15 |
segmental subdivision of hindbrain | 1.53e-25 | 12 |
hindbrain | 1.53e-25 | 12 |
presumptive hindbrain | 1.53e-25 | 12 |
segmental subdivision of nervous system | 1.19e-23 | 13 |
locus ceruleus | 9.07e-18 | 2 |
brainstem nucleus | 9.07e-18 | 2 |
hindbrain nucleus | 9.07e-18 | 2 |
spinal cord | 2.31e-12 | 3 |
dorsal region element | 2.31e-12 | 3 |
dorsum | 2.31e-12 | 3 |
pons | 2.59e-12 | 3 |
neural tube | 7.01e-10 | 56 |
neural rod | 7.01e-10 | 56 |
future spinal cord | 7.01e-10 | 56 |
neural keel | 7.01e-10 | 56 |
central nervous system | 6.13e-07 | 81 |
neural plate | 6.13e-07 | 82 |
presumptive neural plate | 6.13e-07 | 82 |