FFCP PHASE1:Hg19::chr19:38865230..38865255,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5714 | |EntrezGene=5714 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9566 | |HGNC=9566 | ||
|TSSclassifier=strong | |||
|UniProt=P48556 | |UniProt=P48556 | ||
|association_with_transcript=40bp_to_NM_002812,uc002oii.3_5end | |association_with_transcript=40bp_to_NM_002812,uc002oii.3_5end | ||
|cluster_id=chr19:38865230..38865255,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_3_at_PSMD8_5end | |description=CAGE_peak_3_at_PSMD8_5end | ||
|id=chr19:38865230..38865255,+ | |id=chr19:38865230..38865255,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.63e-08!180 | |ontology_enrichment_celltype=CL:0000055!1.63e-08!180 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!4.46e-10!20;UBERON:0002619!7.15e-10!22;UBERON:0005743!2.50e-08!86;UBERON:0000956!2.89e-08!25;UBERON:0000203!2.89e-08!25;UBERON:0000033!4.24e-08!123;UBERON:0001017!4.72e-08!82;UBERON:0000153!7.84e-08!129;UBERON:0007811!7.84e-08!129;UBERON:0000073!1.37e-07!94;UBERON:0001016!1.37e-07!94;UBERON:0001869!1.40e-07!32;UBERON:0001893!1.70e-07!34;UBERON:0002020!1.90e-07!34;UBERON:0003528!1.90e-07!34;UBERON:0000955!2.19e-07!69;UBERON:0006238!2.19e-07!69;UBERON:0000477!3.54e-07!286;UBERON:0004111!3.82e-07!241;UBERON:0002791!4.27e-07!33;UBERON:0000025!4.39e-07!194;UBERON:0002616!6.46e-07!59 | |ontology_enrichment_uberon=UBERON:0001950!4.46e-10!20;UBERON:0002619!7.15e-10!22;UBERON:0005743!2.50e-08!86;UBERON:0000956!2.89e-08!25;UBERON:0000203!2.89e-08!25;UBERON:0000033!4.24e-08!123;UBERON:0001017!4.72e-08!82;UBERON:0000153!7.84e-08!129;UBERON:0007811!7.84e-08!129;UBERON:0000073!1.37e-07!94;UBERON:0001016!1.37e-07!94;UBERON:0001869!1.40e-07!32;UBERON:0001893!1.70e-07!34;UBERON:0002020!1.90e-07!34;UBERON:0003528!1.90e-07!34;UBERON:0000955!2.19e-07!69;UBERON:0006238!2.19e-07!69;UBERON:0000477!3.54e-07!286;UBERON:0004111!3.82e-07!241;UBERON:0002791!4.27e-07!33;UBERON:0000025!4.39e-07!194;UBERON:0002616!6.46e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;3.18e-14;20!UBERON:0002619;2.11e-12;22!UBERON:0000956;3.17e-10;25!UBERON:0000203;3.17e-10;25!UBERON:0002791;1.51e-07;32!UBERON:0001869;1.52e-07;32!UBERON:0001893;2.17e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.76e-14,20;UBERON:0002619,1.24e-12,22;UBERON:0000956,2.00e-10,25;UBERON:0000203,2.00e-10,25;UBERON:0001869,7.71e-09,32;UBERON:0001017,9.99e-09,81;UBERON:0001893,1.12e-08,34;UBERON:0002791,1.61e-08,32;UBERON:0001016,2.41e-08,89;UBERON:0003528,1.14e-07,34;UBERON:0002020,1.14e-07,34;UBERON:0000955,2.85e-07,68;UBERON:0006238,2.85e-07,68;UBERON:0000200,8.49e-07,6 | |||
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| ||
|short_description=p3@PSMD8 | |short_description=p3@PSMD8 | ||
}} | }} |
Latest revision as of 19:29, 17 September 2015
Short description: | p3@PSMD8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PSMD8_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 40bp_to_NM_002812, uc002oii.3_5end |
EntrezGene: | PSMD8 |
HGNC: | 9566 |
UniProt: | P48556 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 1.76e-14 | 20 |
regional part of cerebral cortex | 1.24e-12 | 22 |
cerebral cortex | 2.00e-10 | 25 |
pallium | 2.00e-10 | 25 |
cerebral hemisphere | 7.71e-09 | 32 |
central nervous system | 9.99e-09 | 81 |
telencephalon | 1.12e-08 | 34 |
regional part of telencephalon | 1.61e-08 | 32 |
nervous system | 2.41e-08 | 89 |
brain grey matter | 1.14e-07 | 34 |
gray matter | 1.14e-07 | 34 |
brain | 2.85e-07 | 68 |
future brain | 2.85e-07 | 68 |
gyrus | 8.49e-07 | 6 |