FFCP PHASE1:Hg19::chr3:130064510..130064521,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=256076 | |EntrezGene=256076 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26674 | |HGNC=26674 | ||
|TSSclassifier=strong | |||
|UniProt=E9PAL5,A8TX70,F8W8G8 | |UniProt=E9PAL5,A8TX70,F8W8G8 | ||
|association_with_transcript=151bp_to_ENST00000265379,ENST00000312481,ENST00000432398,NM_153264,NR_022012,uc010hti.1,uc010htj.1_5end | |association_with_transcript=151bp_to_ENST00000265379,ENST00000312481,ENST00000432398,NM_153264,NR_022012,uc010hti.1,uc010htj.1_5end | ||
|cluster_id=chr3:130064510..130064521,+ | |||
|coexpression_cluster_id=C4116 | |||
|description=CAGE_peak_1_at_COL6A5_5end | |description=CAGE_peak_1_at_COL6A5_5end | ||
|id=chr3:130064510..130064521,+ | |id=chr3:130064510..130064521,+ | ||
|ontology_enrichment_celltype=CL:0002274!4.14e-16!5;CL:0000457!4.14e-16!5;CL:0002191!4.14e-16!5;CL:0000097!4.14e-16!5;CL:0000831!4.14e-16!5;CL:0002028!4.14e-16!5;CL:0000763!5.86e-11!112;CL:0000049!5.86e-11!112;CL:0002032!2.58e-09!165;CL:0000837!2.58e-09!165;CL:0000163!3.40e-09!9;CL:0000037!7.85e-09!172;CL:0000566!7.85e-09!172;CL:0000988!3.32e-08!182 | |ontology_enrichment_celltype=CL:0002274!4.14e-16!5;CL:0000457!4.14e-16!5;CL:0002191!4.14e-16!5;CL:0000097!4.14e-16!5;CL:0000831!4.14e-16!5;CL:0002028!4.14e-16!5;CL:0000763!5.86e-11!112;CL:0000049!5.86e-11!112;CL:0002032!2.58e-09!165;CL:0000837!2.58e-09!165;CL:0000163!3.40e-09!9;CL:0000037!7.85e-09!172;CL:0000566!7.85e-09!172;CL:0000988!3.32e-08!182 | ||
|ontology_enrichment_celltype_v019=CL:0000763;4.43e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.54e-14,108;CL:0000049,1.54e-14,108;CL:0002032,9.03e-10,161;CL:0000837,9.03e-10,161;CL:0000037,2.31e-09,168;CL:0000988,6.97e-09,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1036!1.77e-39!8;DOID:8692!5.60e-22!31;DOID:2531!3.29e-19!51;DOID:0060083!3.29e-19!51;DOID:1240!3.28e-17!39;DOID:8552!2.37e-10!1;DOID:0060060!4.85e-10!1;DOID:0060061!4.85e-10!1;DOID:8691!4.85e-10!1 | |||
|ontology_enrichment_disease_v019=DOID:1036;4.56e-77;8!DOID:8692;5.58e-50;31!DOID:1240;7.95e-36;39!DOID:8552;8.64e-26;1!DOID:2531;1.42e-22;51!DOID:0060083;1.42e-22;51 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,6.75e-77,8;DOID:8692,9.50e-51,31;DOID:1240,2.12e-40,39;DOID:2531,5.96e-31,51;DOID:0060083,5.96e-31,51;DOID:8552,5.93e-26,1;DOID:0050686,1.76e-11,137 | |||
|ontology_enrichment_uberon=UBERON:0007029!3.40e-10!1 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p1@COL6A5 | |short_description=p1@COL6A5 | ||
}} | }} |
Latest revision as of 18:40, 24 September 2015
Short description: | p1@COL6A5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COL6A5_5end |
Coexpression cluster: | C4116_chronic_fibrous_adult_bronchioalveolar_leukemia_acute_NK |
Association with transcript: | 151bp_to_ENST00000265379, ENST00000312481, ENST00000432398, NM_153264, NR_022012, uc010hti.1, uc010htj.1_5end |
EntrezGene: | COL6A5 |
HGNC: | 26674 |
UniProt: | E9PAL5A8TX70F8W8G8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.54e-14 | 108 |
common myeloid progenitor | 1.54e-14 | 108 |
hematopoietic oligopotent progenitor cell | 9.03e-10 | 161 |
hematopoietic multipotent progenitor cell | 9.03e-10 | 161 |
hematopoietic stem cell | 2.31e-09 | 168 |
hematopoietic cell | 6.97e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 6.75e-77 | 8 |
myeloid leukemia | 9.50e-51 | 31 |
leukemia | 2.12e-40 | 39 |
hematologic cancer | 5.96e-31 | 51 |
immune system cancer | 5.96e-31 | 51 |
chronic myeloid leukemia | 5.93e-26 | 1 |
organ system cancer | 1.76e-11 | 137 |