FFCP PHASE1:Hg19::chr12:28121947..28121960,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:28121947..28121960,+
|short_description=p@chr12:28121947..28121960,+
|description=CAGE_peak_at_chr12:28121947..28121960,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:28121947..28121960,+ | |||
|description=CAGE_peak_at_chr12:28121947..28121960,+ | |||
|id=chr12:28121947..28121960,+ | |||
|ontology_enrichment_celltype=CL:0002159!1.53e-14!13;CL:0002166!8.31e-11!3;CL:0002621!1.73e-10!3;CL:0002076!3.39e-09!43;CL:0000317!8.98e-08!2;CL:1000448!8.98e-08!2;CL:0002308!8.98e-08!2;CL:0002140!8.98e-08!2;CL:0000223!5.35e-07!59;CL:0000066!8.77e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0002621;3.59e-30;3!CL:0000317;2.45e-12;2!CL:1000448;2.45e-12;2!CL:0002308;2.45e-12;2!CL:0002140;2.45e-12;2!CL:0002251;1.43e-10;20!CL:0002166;1.17e-08;3!CL:0002159;3.04e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,4.84e-30,3;CL:0000317,2.59e-12,2;CL:1000448,2.59e-12,2;CL:0002308,2.59e-12,2;CL:0002140,2.59e-12,2;CL:0002251,1.45e-10,20;CL:0002166,9.66e-09,3;CL:0002159,2.85e-07,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!6.14e-10!14;DOID:2394!2.02e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;2.93e-23;1!DOID:3149;2.93e-23;1!DOID:3451;2.45e-12;2!DOID:4159;2.45e-12;2!DOID:0060122;2.45e-12;2!DOID:5409;6.49e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,6.40e-23,1;DOID:3149,6.40e-23,1;DOID:3451,3.62e-12,2;DOID:4159,3.62e-12,2;DOID:0060122,3.62e-12,2;DOID:5409,6.50e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001949!1.73e-10!3;UBERON:0001708!3.45e-08!4;UBERON:0001704!3.45e-08!4;UBERON:0002419!8.98e-08!2;UBERON:0007771!8.98e-08!2;UBERON:0003297!8.98e-08!2;UBERON:0001821!8.98e-08!2;UBERON:0003487!8.98e-08!2;UBERON:0001820!8.98e-08!2;UBERON:0005089!8.98e-08!2;UBERON:0005088!8.98e-08!2;UBERON:0001876!1.60e-07!2;UBERON:0000161!8.17e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;3.59e-30;3!UBERON:0003729;6.82e-16;13!UBERON:0003929;1.49e-13;7!UBERON:0001876;2.45e-12;2!UBERON:0002419;2.45e-12;2!UBERON:0007771;2.45e-12;2!UBERON:0003297;2.45e-12;2!UBERON:0001821;2.45e-12;2!UBERON:0003487;2.45e-12;2!UBERON:0001820;2.45e-12;2!UBERON:0003350;5.51e-12;8!UBERON:0001828;5.51e-12;8!UBERON:0000161;4.29e-11;19!UBERON:0000166;4.29e-11;19!UBERON:0000344;1.43e-10;20!UBERON:0004807;9.98e-10;22!UBERON:0000486;2.65e-08;12!UBERON:0000165;9.99e-08;28!UBERON:0010371;3.00e-07;31!UBERON:0000014;8.37e-07;4!UBERON:0003343;8.37e-07;4!UBERON:0001708;8.37e-07;4!UBERON:0004785;8.37e-07;4!UBERON:0008895;8.37e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,4.84e-30,3;UBERON:0003729,7.00e-16,13;UBERON:0001876,1.65e-12,2;UBERON:0002419,2.59e-12,2;UBERON:0007771,2.59e-12,2;UBERON:0003297,2.59e-12,2;UBERON:0001821,2.59e-12,2;UBERON:0003487,2.59e-12,2;UBERON:0001820,2.59e-12,2;UBERON:0005089,2.59e-12,2;UBERON:0005088,2.59e-12,2;UBERON:0003350,6.16e-12,8;UBERON:0001828,6.16e-12,8;UBERON:0000344,1.45e-10,20;UBERON:0000166,1.16e-09,22;UBERON:0003102,5.59e-08,99;UBERON:0004807,9.43e-08,28;UBERON:0000165,1.78e-07,29;UBERON:0000930,1.78e-07,29;UBERON:0001708,7.27e-07,4;UBERON:0008895,7.27e-07,4;UBERON:0003343,7.70e-07,4;UBERON:0004785,7.70e-07,4 | |||
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| ||
|short_description=p@chr12:28121947..28121960,+ | |||
}} | }} |
Latest revision as of 07:55, 24 July 2015
Short description: | p@chr12:28121947..28121960, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:28121947..28121960, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 4.84e-30 | 3 |
sebum secreting cell | 2.59e-12 | 2 |
epithelial cell of sweat gland | 2.59e-12 | 2 |
epithelial cell of skin gland | 2.59e-12 | 2 |
acinar cell of sebaceous gland | 2.59e-12 | 2 |
epithelial cell of alimentary canal | 1.45e-10 | 20 |
epithelial cell of Malassez | 9.66e-09 | 3 |
general ecto-epithelial cell | 2.85e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 4.84e-30 | 3 |
mouth mucosa | 7.00e-16 | 13 |
amygdala | 1.65e-12 | 2 |
skin gland | 2.59e-12 | 2 |
epidermis gland | 2.59e-12 | 2 |
gland of integumental system | 2.59e-12 | 2 |
sebaceous gland | 2.59e-12 | 2 |
skin sebaceous gland | 2.59e-12 | 2 |
sweat gland | 2.59e-12 | 2 |
sweat gland placode | 2.59e-12 | 2 |
sebaceous gland placode | 2.59e-12 | 2 |
epithelium of mucosa | 6.16e-12 | 8 |
gingiva | 6.16e-12 | 8 |
mucosa | 1.45e-10 | 20 |
oral opening | 1.16e-09 | 22 |
surface structure | 5.59e-08 | 99 |
respiratory system epithelium | 9.43e-08 | 28 |
mouth | 1.78e-07 | 29 |
stomodeum | 1.78e-07 | 29 |
jaw skeleton | 7.27e-07 | 4 |
splanchnocranium | 7.27e-07 | 4 |
mucosa of oral region | 7.70e-07 | 4 |
respiratory system mucosa | 7.70e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 6.40e-23 | 1 |
keratoacanthoma | 6.40e-23 | 1 |
skin carcinoma | 3.62e-12 | 2 |
skin cancer | 3.62e-12 | 2 |
integumentary system cancer | 3.62e-12 | 2 |
lung small cell carcinoma | 6.50e-07 | 4 |