FFCP PHASE1:Hg19::chr3:54962035..54962047,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57408 | |EntrezGene=57408 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25023 | |HGNC=25023 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HBL6 | |UniProt=Q9HBL6 | ||
|association_with_transcript=24bp_to_NM_020678,uc003dhl.2_5end | |association_with_transcript=24bp_to_NM_020678,uc003dhl.2_5end | ||
|cluster_id=chr3:54962035..54962047,- | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_2_at_LRTM1_5end | |description=CAGE_peak_2_at_LRTM1_5end | ||
|id=chr3:54962035..54962047,- | |id=chr3:54962035..54962047,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.29e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!1.59e-18!2;UBERON:0002757!1.59e-18!2;UBERON:0010134!1.59e-18!2;UBERON:0002784!1.59e-18!2;UBERON:0005408!1.59e-18!2;UBERON:0001899!1.59e-18!2;UBERON:0000341!5.75e-18!2;UBERON:0001723!3.19e-12!3;UBERON:0001033!3.19e-12!3;UBERON:0010056!3.19e-12!3;UBERON:0007029!6.31e-10!1;UBERON:0002426!6.88e-10!1;UBERON:0003831!6.88e-10!1;UBERON:0003898!6.88e-10!1;UBERON:0004830!6.88e-10!1;UBERON:0001774!6.88e-10!1;UBERON:0003830!6.88e-10!1;UBERON:0005175!6.88e-10!1;UBERON:0003897!6.88e-10!1;UBERON:0001103!6.88e-10!1;UBERON:0010084!6.88e-10!1;UBERON:0003296!1.01e-09!4;UBERON:0010133!1.01e-09!4;UBERON:0002372!2.46e-09!1;UBERON:0001961!2.46e-09!1;UBERON:0001744!2.46e-09!1;UBERON:0001735!2.46e-09!1;UBERON:0000020!4.51e-09!23;UBERON:0001032!1.10e-08!24;UBERON:0004456!1.10e-08!24;UBERON:0007023!2.46e-08!115;UBERON:0001042!5.12e-08!10;UBERON:0009145!5.12e-08!10;UBERON:0000966!1.12e-07!5;UBERON:0005388!1.12e-07!5;UBERON:0001802!1.12e-07!5;UBERON:0006562!2.49e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;3.99e-41;2!UBERON:0002757;3.99e-41;2!UBERON:0010134;3.99e-41;2!UBERON:0005408;3.99e-41;2!UBERON:0001899;3.99e-41;2!UBERON:0003296;3.82e-21;4!UBERON:0010133;3.82e-21;4!UBERON:0002784;3.82e-21;4!UBERON:0007029;5.71e-21;1!UBERON:0002426;5.71e-21;1!UBERON:0003831;5.71e-21;1!UBERON:0003898;5.71e-21;1!UBERON:0004830;5.71e-21;1!UBERON:0003830;5.71e-21;1!UBERON:0005175;5.71e-21;1!UBERON:0001774;5.71e-21;1!UBERON:0001103;5.71e-21;1!UBERON:0001894;1.59e-12;7!UBERON:0000341;2.47e-11;2!UBERON:0002360;3.52e-11;2!UBERON:0005090;3.52e-11;2!UBERON:0001630;3.52e-11;2!UBERON:0000094;3.52e-11;2!UBERON:0010743;3.52e-11;2!UBERON:0000020;2.39e-08;23!UBERON:0001032;5.05e-08;24!UBERON:0004456;5.05e-08;24!UBERON:0001723;7.02e-08;3!UBERON:0001033;7.02e-08;3!UBERON:0000922;5.51e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,3.99e-41,2;UBERON:0002757,3.99e-41,2;UBERON:0010134,3.99e-41,2;UBERON:0005408,3.99e-41,2;UBERON:0001899,3.99e-41,2;UBERON:0003296,3.82e-21,4;UBERON:0010133,3.82e-21,4;UBERON:0002784,3.82e-21,4;UBERON:0007029,5.16e-21,1;UBERON:0002426,6.31e-21,1;UBERON:0003831,6.31e-21,1;UBERON:0003898,6.31e-21,1;UBERON:0004830,6.31e-21,1;UBERON:0003830,6.31e-21,1;UBERON:0005175,6.31e-21,1;UBERON:0001774,6.31e-21,1;UBERON:0001103,6.31e-21,1;UBERON:0010084,6.31e-21,1;UBERON:0001894,1.59e-12,7;UBERON:0006222,1.59e-12,7;UBERON:0000341,2.47e-11,2;UBERON:0002360,3.02e-11,2;UBERON:0000094,3.02e-11,2;UBERON:0010743,3.02e-11,2;UBERON:0005090,3.70e-11,2;UBERON:0001630,3.70e-11,2;UBERON:0000020,5.23e-08,24;UBERON:0001032,5.23e-08,24;UBERON:0004456,5.23e-08,24;UBERON:0001723,7.76e-08,3;UBERON:0001033,7.76e-08,3;UBERON:0010056,7.76e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445160178233687,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51016635446356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21031058919516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,5.19755703795225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,173.567394824565,291.55798716372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.929195074296532,1.10609528212909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.794432940146,3.39997695141398,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,8.80838396415839,0,0,0,0,0.404234377916439,0.653150243690884,3.08009970976753,0.134704106029175,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445160178233687,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51016635446356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21031058919516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,5.19755703795225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,173.567394824565,291.55798716372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.929195074296532,1.10609528212909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.794432940146,3.39997695141398,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,8.80838396415839,0,0,0,0,0.404234377916439,0.653150243690884,3.08009970976753,0.134704106029175,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@LRTM1 | |short_description=p2@LRTM1 | ||
}} | }} |
Latest revision as of 02:27, 19 September 2015
Short description: | p2@LRTM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LRTM1_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 24bp_to_NM_020678, uc003dhl.2_5end |
EntrezGene: | LRTM1 |
HGNC: | 25023 |
UniProt: | Q9HBL6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 3.99e-41 | 2 |
regional part of epithalamus | 3.99e-41 | 2 |
secretory circumventricular organ | 3.99e-41 | 2 |
circumventricular organ | 3.99e-41 | 2 |
epithalamus | 3.99e-41 | 2 |
gland of diencephalon | 3.82e-21 | 4 |
neuroendocrine gland | 3.82e-21 | 4 |
regional part of diencephalon | 3.82e-21 | 4 |
surface | 5.16e-21 | 1 |
chest muscle | 6.31e-21 | 1 |
respiratory system muscle | 6.31e-21 | 1 |
skeletal muscle of trunk | 6.31e-21 | 1 |
respiratory system skeletal muscle | 6.31e-21 | 1 |
thoracic segment muscle | 6.31e-21 | 1 |
chest organ | 6.31e-21 | 1 |
muscle of trunk | 6.31e-21 | 1 |
diaphragm | 6.31e-21 | 1 |
future diaphragm | 6.31e-21 | 1 |
diencephalon | 1.59e-12 | 7 |
future diencephalon | 1.59e-12 | 7 |
throat | 2.47e-11 | 2 |
meninx | 3.02e-11 | 2 |
membrane organ | 3.02e-11 | 2 |
meningeal cluster | 3.02e-11 | 2 |
muscle structure | 3.70e-11 | 2 |
muscle organ | 3.70e-11 | 2 |
sense organ | 5.23e-08 | 24 |
sensory system | 5.23e-08 | 24 |
entire sense organ system | 5.23e-08 | 24 |
tongue | 7.76e-08 | 3 |
gustatory system | 7.76e-08 | 3 |
future tongue | 7.76e-08 | 3 |