FFCP PHASE1:Hg19::chr4:108746054..108746072,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=166929 | |EntrezGene=166929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28395 | |HGNC=28395 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_ENST00000515332_5end | |association_with_transcript=16bp_to_ENST00000515332_5end | ||
|cluster_id=chr4:108746054..108746072,+ | |||
|coexpression_cluster_id=C2769 | |||
|description=CAGE_peak_6_at_SGMS2_5end | |description=CAGE_peak_6_at_SGMS2_5end | ||
|id=chr4:108746054..108746072,+ | |id=chr4:108746054..108746072,+ | ||
|ontology_enrichment_celltype=CL:0002057!3.86e-18!42;CL:0000860!2.87e-17!45;CL:0002009!1.93e-11!65;CL:0000557!2.31e-11!71;CL:0002194!6.80e-11!63;CL:0000576!6.80e-11!63;CL:0000040!6.80e-11!63;CL:0000559!6.80e-11!63;CL:0000839!2.63e-10!70;CL:0000548!2.68e-10!679;CL:0000004!2.68e-10!679;CL:0000255!2.68e-10!679;CL:0000012!1.24e-09!682;CL:0002371!1.60e-09!591;CL:0000766!2.00e-09!76;CL:0000063!2.83e-09!578;CL:0000144!7.41e-07!625 | |ontology_enrichment_celltype=CL:0002057!3.86e-18!42;CL:0000860!2.87e-17!45;CL:0002009!1.93e-11!65;CL:0000557!2.31e-11!71;CL:0002194!6.80e-11!63;CL:0000576!6.80e-11!63;CL:0000040!6.80e-11!63;CL:0000559!6.80e-11!63;CL:0000839!2.63e-10!70;CL:0000548!2.68e-10!679;CL:0000004!2.68e-10!679;CL:0000255!2.68e-10!679;CL:0000012!1.24e-09!682;CL:0002371!1.60e-09!591;CL:0000766!2.00e-09!76;CL:0000063!2.83e-09!578;CL:0000144!7.41e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0000860;7.40e-29;33!CL:0002057;7.40e-29;33!CL:0000473;2.87e-21;39!CL:0000234;2.87e-21;39!CL:0000576;5.96e-13;48!CL:0000766;6.22e-08;69!CL:0000349;2.79e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.46e-24,42;CL:0002057,2.46e-24,42;CL:0000473,1.46e-21,48;CL:0000234,1.46e-21,48;CL:0002009,1.42e-15,61;CL:0002194,2.15e-15,59;CL:0000576,2.15e-15,59;CL:0000040,2.15e-15,59;CL:0000559,2.15e-15,59;CL:0000557,7.63e-15,67;CL:0000839,3.27e-14,66;CL:0000766,1.31e-12,72;CL:0000349,1.36e-07,19;CL:0000134,7.11e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;2.40e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!6.42e-16!448;UBERON:0004120!6.42e-16!448;UBERON:0006603!6.42e-16!448;UBERON:0002204!2.20e-15!167;UBERON:0004765!6.43e-14!101;UBERON:0001434!6.43e-14!101;UBERON:0000480!2.53e-13!626;UBERON:0000468!2.99e-13!659;UBERON:0000467!3.16e-13!625;UBERON:0001474!2.35e-12!86;UBERON:0000062!6.62e-12!511;UBERON:0002371!2.29e-11!80;UBERON:0002050!6.19e-10!605;UBERON:0005423!6.19e-10!605;UBERON:0000923!1.01e-09!604;UBERON:0005291!1.01e-09!604;UBERON:0006598!1.01e-09!604;UBERON:0002532!1.01e-09!604;UBERON:0000922!3.85e-09!612;UBERON:0003081!1.84e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;7.57e-08;10!UBERON:0000158;7.57e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001434,1.97e-15,100;UBERON:0002371,2.33e-15,76;UBERON:0001474,3.46e-15,82;UBERON:0004765,1.21e-14,90;UBERON:0002204,4.79e-13,167;UBERON:0000926,6.22e-10,315;UBERON:0004120,6.22e-10,315;UBERON:0006603,6.22e-10,315;UBERON:0002405,7.39e-10,93;UBERON:0003081,1.30e-09,203;UBERON:0002390,3.04e-09,98;UBERON:0003061,3.04e-09,98;UBERON:0002193,3.55e-07,108 | |||
|phase1_expression=1.09007027562334,0.214100523890983,1.55049844505568,0,0,4.36169262050184,0,0,0,0.245733936501509,1.39560233594486,2.83973783769224,1.58260186937072,0.123766352960047,0.331397375727916,0.672325146451775,1.20538905604795,0.730310090387373,0.975865597581014,0.369363174230364,0.408001382488506,0,0.572471974262113,0.410623275218653,0.87879847716362,0,0.0821005894499457,0,0.393364276848904,0.383829398097213,1.23852898652861,0,0.6024118375565,0.369754010166788,0,0,0,1.10799081706375,0.802177789880567,1.08505435357926,0.223915474239924,0.32389366601898,0.257575567634187,1.89017710413434,3.77875943688809,1.69808842831471,2.78914844286822,4.52284676824008,6.19412741790207,6.32923263108731,6.66017836975662,6.62150243688039,8.61864201841546,7.10033151942209,6.77132432971709,2.07066573496865,4.63940455098338,2.02251136000576,6.42776173978895,8.66508373105453,6.39337125799041,1.31940520074686,6.18337338627059,3.40979800426155,6.96502172708602,16.4541715160431,5.60540024096017,8.03995728821578,12.5155900420848,9.33912032232002,4.84319602106695,9.20694089968912,9.49387162322653,0.422510572623884,0.212604299965044,0.419317291016752,1.90958672949042,1.05123824989054,1.6072558669708,0.855038231223746,0.39783335439818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.150575119077773,0,0,0.236777252044017,0.821127996921047,0,0,0,0,0,1.2786256184353,1.0843174571537,1.50401373190767,1.59331170856906,0.795285947051099,0.973269740605272,0.661743720148475,1.99556457716308,1.22968699970376,0.392937226493138,0.364295288292542,0.370784442784429,0.649094787309367,0.174129737299267,0.26591592103773,0,0,0,0.993812036833525,0,0.347140501607594,0,0,1.6507082516404,0.626984899610432,0.258416759169329,0.35576626268671,0.66944122552934,0.402829317109147,0,0,1.83831540172934,0,0.357198913136319,0.673588117878509,1.12611480483322,3.06633274931766,0,0.549605231791222,0,0,1.3082821564276,2.98183171017191,1.01304409331664,1.32409180813219,1.14734648299525,0.354668382198357,0,1.06748995729705,0.49333509683432,2.17847724779836,0.808264032418128,1.63461903113459,0.151357427644931,0.576175924479999,0,1.5608003841516,0.570471821544449,1.34503812496621,0.704606991862589,1.13311061057692,0.98315564691574,0.61246251376468,0.491337269247072,1.23990937410919,1.18800285728205,1.23633464639278,0.910161361938026,0,0.673344455816265,0.625592599359821,3.3247693858102,1.31693286264251,0.612975591598039,1.95309476578576,1.13432183160021,0.89694817844431,1.2813443329114,1.05965950579781,0.600182192168805,0.721367704669072,0.515281080091258,1.11670113798954,1.35021065793013,0.292311015483596,0.504867548488229,0.460249493211497,0.80823028409406,1.06502877754984,0.201504196455281,0.169560592310488,2.51239109112286,3.81844568827169,2.00763216772303,0,0,0,0,0,0.36497735907583,0,3.21620469096443,0,1.85747171212792,0.721879481669586,0.828147600278907,0.337169380156203,0.482022059766964,1.32352767278873,0.217879444092406,0.474541238222193,0.404493924480493,0.784885860501384,1.15424147083917,0,0,0,0,0,0.982827216677626,2.36315962672562,0,0.245976877086227,0.857839051492628,1.64625428112938,0,1.40740561376283,1.29623823221941,0.325808305310325,0,0,0,2.11335649624479,0.577465791044295,0,0.570762456703795,0.790204397959275,0,0.738651018262192,1.17002132569619,1.0404181360211,2.81201501960331,1.34385702559088,0.992425680696705,1.16426079513703,2.03443756959773,1.53353071666084,3.4486426652716,0.264145302039678,1.24396869324463,0.720599767084807,0.50496973370552,0.317489471460845,0.763976851116555,0,0,0.205654985406647,0,0.285826432630578,0.336393253036082,0,0.5867062865676,1.80980402060889,0,1.690605505112,0.531876233169741,2.08014873822732,0.257207374262142,1.41849132023278,0.266422179016099,0.857867961948885,1.08524321078289,0,0.977208552881205,0,0,0.904318131178758,3.48613383440118,2.39935178836937,0,0,0,1.67737398844108,1.14861935834114,1.42636905040718,2.31650090668127,0.410952645100767,1.79060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0.749007023947182,0,0,0.49076596687656,1.00034104211935,0.542530047399471,1.45579603071565,1.42743191037729,0.788512075169673,1.63997980989798,0.601892199455438,0,1.03473071292505,1.32845119707087,1.10621501125022,1.56390506042549,0,0,0.82707210449155,0.215714200818617,0.213455115606889,0.909382714338778,0,2.41912234663744,1.98486246255021,1.99500565274481,1.12264037773229,1.66580894032411,2.04682899626681,2.2519548960105,0,0.308419387605311,1.24293207719189,0.657017248110473,0,0.929683027679674,0,1.20303882181971,2.02578175658972,1.83703117063371,1.0925470080403,0.262248829918848,0,1.69433741629712,0.784349769176855,0,1.37217117560738,1.13733384070897,0,0.431831832204279,0,0.812839312631559,0,1.52925763827023,0,1.79099803777743,0,0,1.28225062558195,0.328014645699706,0.650756789328606,1.33953315142039,1.00726411300178,0.990113999047056,0,1.30012049207304,0,0.096670718292122,0.924291702687866,0.921022048356777,0.964856007391714,0.429680979473094,1.0151168573996,0.68181301932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|phase1_expression=1.09007027562334,0.214100523890983,1.55049844505568,0,0,4.36169262050184,0,0,0,0.245733936501509,1.39560233594486,2.83973783769224,1.58260186937072,0.123766352960047,0.331397375727916,0.672325146451775,1.20538905604795,0.730310090387373,0.975865597581014,0.369363174230364,0.408001382488506,0,0.572471974262113,0.410623275218653,0.87879847716362,0,0.0821005894499457,0,0.393364276848904,0.383829398097213,1.23852898652861,0,0.6024118375565,0.369754010166788,0,0,0,1.10799081706375,0.802177789880567,1.08505435357926,0.223915474239924,0.32389366601898,0.257575567634187,1.89017710413434,3.77875943688809,1.69808842831471,2.78914844286822,4.52284676824008,6.19412741790207,6.32923263108731,6.66017836975662,6.62150243688039,8.61864201841546,7.10033151942209,6.77132432971709,2.07066573496865,4.63940455098338,2.02251136000576,6.42776173978895,8.66508373105453,6.39337125799041,1.31940520074686,6.18337338627059,3.40979800426155,6.96502172708602,16.4541715160431,5.60540024096017,8.03995728821578,12.5155900420848,9.33912032232002,4.84319602106695,9.20694089968912,9.49387162322653,0.422510572623884,0.212604299965044,0.419317291016752,1.90958672949042,1.05123824989054,1.6072558669708,0.855038231223746,0.39783335439818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.150575119077773,0,0,0.236777252044017,0.821127996921047,0,0,0,0,0,1.2786256184353,1.0843174571537,1.50401373190767,1.59331170856906,0.795285947051099,0.973269740605272,0.661743720148475,1.99556457716308,1.22968699970376,0.392937226493138,0.364295288292542,0.370784442784429,0.649094787309367,0.174129737299267,0.26591592103773,0,0,0,0.993812036833525,0,0.347140501607594,0,0,1.6507082516404,0.626984899610432,0.258416759169329,0.35576626268671,0.66944122552934,0.402829317109147,0,0,1.83831540172934,0,0.357198913136319,0.673588117878509,1.12611480483322,3.06633274931766,0,0.549605231791222,0,0,1.3082821564276,2.98183171017191,1.01304409331664,1.32409180813219,1.14734648299525,0.354668382198357,0,1.06748995729705,0.49333509683432,2.17847724779836,0.808264032418128,1.63461903113459,0.151357427644931,0.576175924479999,0,1.5608003841516,0.570471821544449,1.34503812496621,0.704606991862589,1.13311061057692,0.98315564691574,0.61246251376468,0.491337269247072,1.23990937410919,1.18800285728205,1.23633464639278,0.910161361938026,0,0.673344455816265,0.625592599359821,3.3247693858102,1.31693286264251,0.612975591598039,1.95309476578576,1.13432183160021,0.89694817844431,1.2813443329114,1.05965950579781,0.600182192168805,0.721367704669072,0.515281080091258,1.11670113798954,1.35021065793013,0.292311015483596,0.504867548488229,0.460249493211497,0.80823028409406,1.06502877754984,0.201504196455281,0.169560592310488,2.51239109112286,3.81844568827169,2.00763216772303,0,0,0,0,0,0.36497735907583,0,3.21620469096443,0,1.85747171212792,0.721879481669586,0.828147600278907,0.337169380156203,0.482022059766964,1.32352767278873,0.217879444092406,0.474541238222193,0.404493924480493,0.784885860501384,1.15424147083917,0,0,0,0,0,0.982827216677626,2.36315962672562,0,0.245976877086227,0.857839051492628,1.64625428112938,0,1.40740561376283,1.29623823221941,0.325808305310325,0,0,0,2.11335649624479,0.577465791044295,0,0.570762456703795,0.790204397959275,0,0.738651018262192,1.17002132569619,1.0404181360211,2.81201501960331,1.34385702559088,0.992425680696705,1.16426079513703,2.03443756959773,1.53353071666084,3.4486426652716,0.264145302039678,1.24396869324463,0.720599767084807,0.50496973370552,0.317489471460845,0.763976851116555,0,0,0.205654985406647,0,0.285826432630578,0.336393253036082,0,0.5867062865676,1.80980402060889,0,1.690605505112,0.531876233169741,2.08014873822732,0.257207374262142,1.41849132023278,0.266422179016099,0.857867961948885,1.08524321078289,0,0.977208552881205,0,0,0.904318131178758,3.48613383440118,2.39935178836937,0,0,0,1.67737398844108,1.14861935834114,1.42636905040718,2.31650090668127,0.410952645100767,1.79060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0.749007023947182,0,0,0.49076596687656,1.00034104211935,0.542530047399471,1.45579603071565,1.42743191037729,0.788512075169673,1.63997980989798,0.601892199455438,0,1.03473071292505,1.32845119707087,1.10621501125022,1.56390506042549,0,0,0.82707210449155,0.215714200818617,0.213455115606889,0.909382714338778,0,2.41912234663744,1.98486246255021,1.99500565274481,1.12264037773229,1.66580894032411,2.04682899626681,2.2519548960105,0,0.308419387605311,1.24293207719189,0.657017248110473,0,0.929683027679674,0,1.20303882181971,2.02578175658972,1.83703117063371,1.0925470080403,0.262248829918848,0,1.69433741629712,0.784349769176855,0,1.37217117560738,1.13733384070897,0,0.431831832204279,0,0.812839312631559,0,1.52925763827023,0,1.79099803777743,0,0,1.28225062558195,0.328014645699706,0.650756789328606,1.33953315142039,1.00726411300178,0.990113999047056,0,1.30012049207304,0,0.096670718292122,0.924291702687866,0.921022048356777,0.964856007391714,0.429680979473094,1.0151168573996,0.68181301932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| ||
|short_description=p6@SGMS2 | |short_description=p6@SGMS2 | ||
}} | }} |
Latest revision as of 07:42, 20 September 2015
Short description: | p6@SGMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SGMS2_5end |
Coexpression cluster: | C2769_CD14_amniotic_chorionic_immature_Mast_Smooth_granulosa |
Association with transcript: | 16bp_to_ENST00000515332_5end |
EntrezGene: | SGMS2 |
HGNC: | 28395 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.46e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.46e-24 | 42 |
defensive cell | 1.46e-21 | 48 |
phagocyte | 1.46e-21 | 48 |
macrophage dendritic cell progenitor | 1.42e-15 | 61 |
monopoietic cell | 2.15e-15 | 59 |
monocyte | 2.15e-15 | 59 |
monoblast | 2.15e-15 | 59 |
promonocyte | 2.15e-15 | 59 |
granulocyte monocyte progenitor cell | 7.63e-15 | 67 |
myeloid lineage restricted progenitor cell | 3.27e-14 | 66 |
myeloid leukocyte | 1.31e-12 | 72 |
extraembryonic cell | 1.36e-07 | 19 |
mesenchymal cell | 7.11e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
skeletal system | 1.97e-15 | 100 |
bone marrow | 2.33e-15 | 76 |
bone element | 3.46e-15 | 82 |
skeletal element | 1.21e-14 | 90 |
musculoskeletal system | 4.79e-13 | 167 |
mesoderm | 6.22e-10 | 315 |
mesoderm-derived structure | 6.22e-10 | 315 |
presumptive mesoderm | 6.22e-10 | 315 |
immune system | 7.39e-10 | 93 |
lateral plate mesoderm | 1.30e-09 | 203 |
hematopoietic system | 3.04e-09 | 98 |
blood island | 3.04e-09 | 98 |
hemolymphoid system | 3.55e-07 | 108 |