FFCP PHASE1:Hg19::chr4:110481328..110481333,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55013 | |EntrezGene=55013 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26076 | |HGNC=26076 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NWR8 | |UniProt=Q9NWR8 | ||
|association_with_transcript=-21bp_to_NM_017918,uc010imf.2,uc011cfs.1_5end | |association_with_transcript=-21bp_to_NM_017918,uc010imf.2,uc011cfs.1_5end | ||
|cluster_id=chr4:110481328..110481333,+ | |||
|description=CAGE_peak_5_at_CCDC109B_5end | |description=CAGE_peak_5_at_CCDC109B_5end | ||
|id=chr4:110481328..110481333,+ | |id=chr4:110481328..110481333,+ | ||
|ontology_enrichment_celltype=CL:0002087!7.67e-27!119;CL:0002031!5.10e-24!124;CL:0000738!4.10e-21!140;CL:0000037!2.63e-19!172;CL:0000566!2.63e-19!172;CL:0002032!5.73e-19!165;CL:0000837!5.73e-19!165;CL:0000988!1.35e-17!182;CL:0002057!1.81e-16!42;CL:0000860!2.79e-16!45;CL:0000542!6.54e-15!53;CL:0000051!6.54e-15!53;CL:0000838!1.62e-14!52;CL:0002194!9.81e-12!63;CL:0000576!9.81e-12!63;CL:0000040!9.81e-12!63;CL:0000559!9.81e-12!63;CL:0002009!1.88e-11!65;CL:0000839!1.43e-10!70;CL:0000557!3.99e-10!71;CL:0000945!5.60e-09!24;CL:0000826!5.60e-09!24;CL:0000766!6.61e-09!76;CL:0000236!2.02e-07!14;CL:0000763!6.45e-07!112;CL:0000049!6.45e-07!112;CL:0002139!7.84e-07!24 | |ontology_enrichment_celltype=CL:0002087!7.67e-27!119;CL:0002031!5.10e-24!124;CL:0000738!4.10e-21!140;CL:0000037!2.63e-19!172;CL:0000566!2.63e-19!172;CL:0002032!5.73e-19!165;CL:0000837!5.73e-19!165;CL:0000988!1.35e-17!182;CL:0002057!1.81e-16!42;CL:0000860!2.79e-16!45;CL:0000542!6.54e-15!53;CL:0000051!6.54e-15!53;CL:0000838!1.62e-14!52;CL:0002194!9.81e-12!63;CL:0000576!9.81e-12!63;CL:0000040!9.81e-12!63;CL:0000559!9.81e-12!63;CL:0002009!1.88e-11!65;CL:0000839!1.43e-10!70;CL:0000557!3.99e-10!71;CL:0000945!5.60e-09!24;CL:0000826!5.60e-09!24;CL:0000766!6.61e-09!76;CL:0000236!2.02e-07!14;CL:0000763!6.45e-07!112;CL:0000049!6.45e-07!112;CL:0002139!7.84e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000860;7.66e-29;33!CL:0002057;7.66e-29;33!CL:0000473;5.53e-21;39!CL:0000234;5.53e-21;39!CL:0000576;5.68e-14;48!CL:0000945;1.26e-13;24!CL:0002087;8.55e-12;104!CL:0000542;3.98e-11;53!CL:0000236;2.34e-10;13!CL:0000738;1.13e-07;136!CL:0000766;1.42e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,5.77e-36,115;CL:0002031,2.39e-32,120;CL:0000738,6.23e-29,136;CL:0000860,1.59e-26,42;CL:0002057,1.59e-26,42;CL:0002032,5.92e-26,161;CL:0000837,5.92e-26,161;CL:0000473,3.87e-25,48;CL:0000234,3.87e-25,48;CL:0000037,1.02e-24,168;CL:0000988,2.81e-22,177;CL:0000542,3.18e-18,53;CL:0000051,3.18e-18,53;CL:0002009,7.17e-18,61;CL:0002194,9.49e-18,59;CL:0000576,9.49e-18,59;CL:0000040,9.49e-18,59;CL:0000559,9.49e-18,59;CL:0000838,1.63e-17,52;CL:0000557,2.79e-15,67;CL:0000839,1.00e-14,66;CL:0000945,6.03e-14,24;CL:0000826,6.03e-14,24;CL:0000766,1.73e-13,72;CL:0000236,2.82e-11,14;CL:0000763,5.45e-10,108;CL:0000049,5.45e-10,108 | |||
|ontology_enrichment_development_v019=CL:0002057;5.39e-19;42!CL:0000051;3.98e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!5.96e-10!112;UBERON:0002390!4.69e-09!102;UBERON:0003061!4.69e-09!102;UBERON:0002371!1.46e-08!80;UBERON:0001474!7.57e-08!86;UBERON:0002405!8.71e-08!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,4.88e-16,93;UBERON:0002193,3.21e-15,108;UBERON:0002390,1.07e-14,98;UBERON:0003061,1.07e-14,98;UBERON:0002371,5.16e-14,76;UBERON:0001474,3.51e-12,82;UBERON:0004765,3.73e-10,90;UBERON:0001434,3.89e-08,100;UBERON:0003081,2.88e-07,203 | |||
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|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0.491467873003018,0,0.436882744260345,0.263766978228454,0.123766352960047,0,0.672325146451775,0,0.730310090387373,0,0.984968464614303,0.816002764977012,0.940364164434263,3.14859585844162,2.18999080116615,1.25542639594803,1.37544130346312,1.80621296789881,0.944529375764151,0.393364276848904,1.15148819429164,0.928896739896456,0,0,0,5.50017124120142,2.13253848731132,0.293600439334847,0.553995408531877,0.601633342410425,0.434021741431704,0.671746422719773,0.647787332037959,0.257575567634187,2.18097358169347,1.88937971844405,2.66842467306598,2.78914844286822,3.70051099219643,2.78735733805593,4.31538588483226,4.35473201099471,4.49316236788312,1.72372840368309,0.645484683583826,0,1.88242339542605,3.27487380069415,4.26974620445661,1.53041946185451,2.24650318953266,2.55734850319616,3.62836430205388,5.78444607102732,4.68847225585964,3.48251086354301,1.13477044938228,1.24564449799115,4.01997864410789,5.21482918420201,3.69221035998698,1.21079900526674,1.84138817993782,1.26584954976354,0,1.27562579979026,0.628975936525128,1.46027220490444,1.35159203557356,0.803627933485401,1.71007646244749,0.19891667719909,0.547992461293902,3.51992488922645,1.09227722252426,3.55803701545422,2.56038133539904,2.00197993518006,1.72425731986345,1.98313461835459,0.954053754535364,1.70763890732835,2.93618594685469,1.14681968437569,0,0.560508562981536,1.05353633910031,1.57367816091066,1.57204305099666,0.616804496998528,1.33749196312542,0.977766799900771,0.946895611469467,0,0.779873198196215,1.17842362989935,0.886135578334485,1.62482318259009,0.25618263945135,1.30059347559878,0.493313713811028,1.65810010671509,2.31842468588042,3.26230438956533,2.1403266247177,2.09071047609954,1.24640276967323,1.14966148080576,2.40539211837841,2.02415753615602,0.318565414324097,3.25541726928209,0.950452044448374,0.451725357233318,1.27986611154418,3.74792179657038,1.65744076430812,0.821127996921047,0.604820229674197,1.06976078313403,1.01377082717959,0,0,0.12786256184353,1.44575660953827,0,0.144846518960824,0,0,0.661743720148475,0.886917589850256,0.263504357079378,0.589405839739707,1.82147644146271,0.370784442784429,0.324547393654683,0,0.26591592103773,0.953962497221368,0.571994910780128,0.74291500265913,1.39133685156694,1.72046919021225,0.694281003215189,1.69592382577203,2.09749718104953,1.37559020970034,0.835979866147242,0.516833518338658,1.42306505074684,1.00416183829401,0.805658634218294,0.760272105718513,0.24406205754817,2.57364156242108,0.81014194788176,0.803697554556718,1.79623498100936,1.35133776579987,0,1.89853131913626,0.916008719652036,0,0,0,0.993943903390637,0.379891534993739,0.132409180813219,0,0.354668382198357,0,0,0,0.311211035399766,0.269421344139376,0.817309515567294,0.151357427644931,0,0.234321431833797,0,0,0.298897361103602,0.117434498643765,0.485618833104395,0.842704840213491,0.204154171254893,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0,0.673344455816265,0.375355559615893,0.277064115484183,0,0.30648779579902,0.150238058906597,0.907457465280168,0,0.213557388818567,0,0,0.206105058476878,0,0,0,0.194874010322397,0,0.0920498986422993,0.323292113637624,0,0.302256294682921,0.508681776931463,1.15956511897978,0.545492241181669,0.286804595389004,0.487894824518382,1.32529768321485,0.929551542956147,0.310983165046111,1.00928340350251,1.82488679537915,0,0,0,0,0,0.118306800039844,0.505754070234305,0.241011029883482,0.220587945464788,0.871517776369625,0.237270619111097,0.539325232640658,0,0,0.738155454624648,2.80483547606892,0,0,0,0,0,0,0.245976877086227,0.857839051492628,0.548751427043128,0,0.703702806881416,0.462942225792648,0,1.03993478527958,0,0.927443239800615,0.352226082707465,0.866198686566443,0.462985512576611,0.951270761172991,0,0,0.492434012174795,0,0.594524649154913,0.93733833986777,0.839910640994298,0.850650583454319,0.0895585227028483,0.581267877027924,0.766765358330422,0,0.088048434013226,0.414656231081544,0.576479813667846,0.50496973370552,0.380987365753014,0,0,0,0.205654985406647,0.600686115687835,0,0.224262168690721,0,0.36669142910475,0.129271715757778,0,0,0.26593811658487,0,1.28603687131071,1.41849132023278,0,0.285955987316295,0,0,0,0.355391948742546,0,0.301439377059586,0,0.099972991182057,0,1.50677127429638,2.10833939483032,0,0,2.85273810081437,0,0.205476322550383,0.895304816199478,0.896681151948218,1.37921532141349,1.50939302401662,1.15508732651774,4.8277978602268,3.90419561572865,0,3.01529277601828,2.55175500661265,0,0,0,0,0,0,0,0,0,0.35142424497814,0,0,1.03473071292505,0.664225598535437,0.553107505625109,0.0868836144680828,0.195801157462741,0.686286847621712,0.620304078368662,1.07857100409308,0.640365346820666,0,0,0.604780586659361,0,0.306923946576125,0,0.256278298511402,0,0,0,0,0.355123450626254,0.492762936082855,1.03850885836724,0.581051892299796,0,0.40101294060657,0.0920809889358963,0.574072240823034,0.364182336013434,0.262248829918848,0.451199612907412,1.07821471946181,0.784349769176855,0,0.633309773357254,0,1.70093705276516,0.647747748306418,0,0.812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| ||
|short_description=p5@CCDC109B | |short_description=p5@CCDC109B | ||
}} | }} |
Latest revision as of 16:10, 24 September 2015
Short description: | p5@CCDC109B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CCDC109B_5end |
Coexpression cluster: | NA |
Association with transcript: | -21bp_to_NM_017918, uc010imf.2, uc011cfs.1_5end |
EntrezGene: | CCDC109B |
HGNC: | 26076 |
UniProt: | Q9NWR8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 5.77e-36 | 115 |
hematopoietic lineage restricted progenitor cell | 2.39e-32 | 120 |
leukocyte | 6.23e-29 | 136 |
classical monocyte | 1.59e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.59e-26 | 42 |
hematopoietic oligopotent progenitor cell | 5.92e-26 | 161 |
hematopoietic multipotent progenitor cell | 5.92e-26 | 161 |
defensive cell | 3.87e-25 | 48 |
phagocyte | 3.87e-25 | 48 |
hematopoietic stem cell | 1.02e-24 | 168 |
hematopoietic cell | 2.81e-22 | 177 |
lymphocyte | 3.18e-18 | 53 |
common lymphoid progenitor | 3.18e-18 | 53 |
macrophage dendritic cell progenitor | 7.17e-18 | 61 |
monopoietic cell | 9.49e-18 | 59 |
monocyte | 9.49e-18 | 59 |
monoblast | 9.49e-18 | 59 |
promonocyte | 9.49e-18 | 59 |
lymphoid lineage restricted progenitor cell | 1.63e-17 | 52 |
granulocyte monocyte progenitor cell | 2.79e-15 | 67 |
myeloid lineage restricted progenitor cell | 1.00e-14 | 66 |
lymphocyte of B lineage | 6.03e-14 | 24 |
pro-B cell | 6.03e-14 | 24 |
myeloid leukocyte | 1.73e-13 | 72 |
B cell | 2.82e-11 | 14 |
myeloid cell | 5.45e-10 | 108 |
common myeloid progenitor | 5.45e-10 | 108 |
Ontology term | p-value | n |
---|---|---|
immune system | 4.88e-16 | 93 |
hemolymphoid system | 3.21e-15 | 108 |
hematopoietic system | 1.07e-14 | 98 |
blood island | 1.07e-14 | 98 |
bone marrow | 5.16e-14 | 76 |
bone element | 3.51e-12 | 82 |
skeletal element | 3.73e-10 | 90 |
skeletal system | 3.89e-08 | 100 |
lateral plate mesoderm | 2.88e-07 | 203 |