FFCP PHASE1:Hg19::chr12:51663728..51663794,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:51663728..51663794,-
|short_description=p4@SMAGP
|description=CAGE_peak_4_at_SMAGP_5end
|association_with_transcript=0bp_to_uc001ryc.1_5end
|EntrezGene=5...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57228 | |EntrezGene=57228 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=26918 | |HGNC=26918 | ||
|TSSclassifier=strong | |||
|UniProt=Q0VAQ4 | |UniProt=Q0VAQ4 | ||
|association_with_transcript=0bp_to_uc001ryc.1_5end | |||
|cluster_id=chr12:51663728..51663794,- | |||
|description=CAGE_peak_4_at_SMAGP_5end | |||
|id=chr12:51663728..51663794,- | |||
|ontology_enrichment_celltype=CL:0002321!2.97e-17!248;CL:0000220!7.32e-17!246;CL:0000066!9.50e-16!254;CL:0000055!8.32e-13!180;CL:0000548!4.04e-10!679;CL:0000004!4.04e-10!679;CL:0000255!4.04e-10!679;CL:0000012!1.02e-09!682;CL:0000057!3.02e-09!75;CL:0000183!3.21e-08!59;CL:0000223!1.18e-07!59;CL:0000222!8.82e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:1000497;5.72e-07;17!CL:0002518;5.72e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,7.08e-18,250;CL:0000066,3.02e-14,253;CL:0000057,6.69e-09,76;CL:0000222,1.61e-07,121;CL:1000497,5.20e-07,17;CL:0002518,5.20e-07,17;CL:1000449,8.66e-07,15;CL:0000680,8.89e-07,58;CL:0000056,8.89e-07,58;CL:0000355,8.89e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!5.35e-18!238;UBERON:0009142!5.35e-18!238;UBERON:0002100!5.06e-16!216;UBERON:0000481!2.17e-15!347;UBERON:0005256!8.13e-15!143;UBERON:0000466!1.01e-12!126;UBERON:0000475!1.99e-12!365;UBERON:0000464!2.63e-12!104;UBERON:0003102!9.88e-12!95;UBERON:0004119!2.60e-11!169;UBERON:0000925!2.60e-11!169;UBERON:0006595!2.60e-11!169;UBERON:0000119!7.19e-11!312;UBERON:0000914!2.37e-10!83;UBERON:0002329!2.37e-10!83;UBERON:0003077!2.37e-10!83;UBERON:0003059!2.37e-10!83;UBERON:0007282!2.37e-10!83;UBERON:0009618!2.37e-10!83;UBERON:0007285!2.37e-10!83;UBERON:0000486!2.97e-10!82;UBERON:0000490!3.12e-10!138;UBERON:0001048!3.51e-10!168;UBERON:0000483!3.58e-10!309;UBERON:0003886!4.04e-10!63;UBERON:0003914!4.19e-10!118;UBERON:0001007!1.72e-09!155;UBERON:0001555!1.72e-09!155;UBERON:0007026!1.72e-09!155;UBERON:0000468!2.69e-09!659;UBERON:0005177!2.92e-09!107;UBERON:0002553!4.24e-09!70;UBERON:0004290!1.22e-08!70;UBERON:0000467!6.68e-08!625;UBERON:0000480!1.10e-07!626;UBERON:0000077!4.74e-07!130;UBERON:0002097!5.88e-07!40;UBERON:0000922!5.90e-07!612;UBERON:0002199!8.12e-07!45;UBERON:0002416!8.12e-07!45;UBERON:0001444!9.52e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0003102;5.07e-07;50!UBERON:0002067;5.73e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.41e-13,160;UBERON:0009142,1.41e-13,160;UBERON:0002100,8.46e-13,199;UBERON:0000490,1.77e-12,148;UBERON:0003102,5.13e-12,99;UBERON:0007503,1.79e-11,78;UBERON:0000486,1.08e-10,83;UBERON:0005256,8.16e-10,122;UBERON:0002329,2.65e-09,71;UBERON:0003059,2.65e-09,71;UBERON:0007282,2.65e-09,71;UBERON:0004290,2.65e-09,71;UBERON:0009618,2.65e-09,71;UBERON:0007524,5.56e-09,73;UBERON:0003077,6.75e-09,72;UBERON:0007285,6.75e-09,72;UBERON:0003914,8.92e-09,117;UBERON:0000119,1.32e-08,309;UBERON:0005177,3.68e-08,101;UBERON:0002097,3.74e-08,41;UBERON:0000483,5.77e-08,306;UBERON:0002199,7.25e-08,46;UBERON:0002416,7.25e-08,46;UBERON:0003886,2.29e-07,54;UBERON:0002067,6.83e-07,9;UBERON:0004016,6.83e-07,9;UBERON:0010083,6.83e-07,9;UBERON:0004211,8.66e-07,15;UBERON:0009773,8.66e-07,15;UBERON:0001231,8.66e-07,15;UBERON:0001285,8.66e-07,15;UBERON:0007684,8.66e-07,15;UBERON:0004208,8.66e-07,15;UBERON:0002049,9.45e-07,78;UBERON:0007798,9.45e-07,78 | |||
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| ||
|short_description=p4@SMAGP | |||
}} | }} |
Latest revision as of 19:57, 18 September 2015
Short description: | p4@SMAGP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SMAGP_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc001ryc.1_5end |
EntrezGene: | SMAGP |
HGNC: | 26918 |
UniProt: | Q0VAQ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 7.08e-18 | 250 |
epithelial cell | 3.02e-14 | 253 |
fibroblast | 6.69e-09 | 76 |
mesodermal cell | 1.61e-07 | 121 |
kidney cell | 5.20e-07 | 17 |
kidney epithelial cell | 5.20e-07 | 17 |
epithelial cell of nephron | 8.66e-07 | 15 |
muscle precursor cell | 8.89e-07 | 58 |
myoblast | 8.89e-07 | 58 |
multi-potent skeletal muscle stem cell | 8.89e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.41e-13 | 160 |
entire embryonic mesenchyme | 1.41e-13 | 160 |
trunk | 8.46e-13 | 199 |
unilaminar epithelium | 1.77e-12 | 148 |
surface structure | 5.13e-12 | 99 |
epithelial vesicle | 1.79e-11 | 78 |
multilaminar epithelium | 1.08e-10 | 83 |
trunk mesenchyme | 8.16e-10 | 122 |
somite | 2.65e-09 | 71 |
presomitic mesoderm | 2.65e-09 | 71 |
presumptive segmental plate | 2.65e-09 | 71 |
dermomyotome | 2.65e-09 | 71 |
trunk paraxial mesoderm | 2.65e-09 | 71 |
dense mesenchyme tissue | 5.56e-09 | 73 |
paraxial mesoderm | 6.75e-09 | 72 |
presumptive paraxial mesoderm | 6.75e-09 | 72 |
epithelial tube | 8.92e-09 | 117 |
cell layer | 1.32e-08 | 309 |
trunk region element | 3.68e-08 | 101 |
skin of body | 3.74e-08 | 41 |
epithelium | 5.77e-08 | 306 |
integument | 7.25e-08 | 46 |
integumental system | 7.25e-08 | 46 |
body cavity precursor | 2.29e-07 | 54 |
dermis | 6.83e-07 | 9 |
dermatome | 6.83e-07 | 9 |
future dermis | 6.83e-07 | 9 |
nephron epithelium | 8.66e-07 | 15 |
renal tubule | 8.66e-07 | 15 |
nephron tubule | 8.66e-07 | 15 |
nephron | 8.66e-07 | 15 |
uriniferous tubule | 8.66e-07 | 15 |
nephrogenic mesenchyme | 8.66e-07 | 15 |
vasculature | 9.45e-07 | 78 |
vascular system | 9.45e-07 | 78 |