FFCP PHASE1:Hg19::chr4:41540215..41540226,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22998 | |EntrezGene=22998 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29191 | |HGNC=29191 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=24bp_to_ENST00000511496,uc003gvz.3,uc003gwa.3_5end | |association_with_transcript=24bp_to_ENST00000511496,uc003gvz.3,uc003gwa.3_5end | ||
|cluster_id=chr4:41540215..41540226,+ | |||
|coexpression_cluster_id=C2793 | |||
|description=CAGE_peak_15_at_LIMCH1_5end | |description=CAGE_peak_15_at_LIMCH1_5end | ||
|id=chr4:41540215..41540226,+ | |id=chr4:41540215..41540226,+ | ||
|ontology_enrichment_celltype=CL:0000077!6.08e-09!19 | |ontology_enrichment_celltype=CL:0000077!6.08e-09!19 | ||
|ontology_enrichment_celltype_v019=CL:0000077;2.84e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,2.72e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0005062;3.36e-10;4!UBERON:0007284;3.36e-10;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.76e-33!115;UBERON:0001049!3.85e-11!57;UBERON:0005068!3.85e-11!57;UBERON:0006241!3.85e-11!57;UBERON:0007135!3.85e-11!57;UBERON:0000064!6.90e-11!219;UBERON:0003075!3.28e-10!86;UBERON:0007284!3.28e-10!86;UBERON:0002346!2.61e-09!90;UBERON:0002020!4.97e-09!34;UBERON:0003528!4.97e-09!34;UBERON:0000477!1.54e-08!286;UBERON:0002780!2.96e-08!41;UBERON:0001890!2.96e-08!41;UBERON:0006240!2.96e-08!41;UBERON:0003080!6.28e-08!42;UBERON:0001557!9.69e-08!19;UBERON:0001017!1.01e-07!82;UBERON:0001893!1.20e-07!34;UBERON:0001737!1.25e-07!9;UBERON:0002616!1.38e-07!59;UBERON:0005743!1.58e-07!86;UBERON:0001869!2.45e-07!32;UBERON:0002791!3.45e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0004151;7.29e-14;3!UBERON:0003978;1.91e-13;3!UBERON:0000946;1.91e-13;3!UBERON:0002081;4.24e-10;2!UBERON:0005090;1.13e-09;2!UBERON:0001630;1.13e-09;2!UBERON:0002133;1.13e-09;2!UBERON:0007100;1.42e-09;25!UBERON:0000341;2.96e-09;2!UBERON:0002106;3.56e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,7.52e-14,3;UBERON:0003978,1.37e-13,3;UBERON:0009751,1.37e-13,3;UBERON:0000946,1.37e-13,3;UBERON:0002523,1.37e-13,3;UBERON:0005983,1.37e-13,3;UBERON:0002165,1.37e-13,3;UBERON:0002062,1.37e-13,3;UBERON:0007280,1.37e-13,3;UBERON:0002081,4.66e-10,2;UBERON:0010227,4.66e-10,2;UBERON:0002133,5.81e-10,2;UBERON:0005090,6.63e-10,2;UBERON:0001630,6.63e-10,2;UBERON:0000341,1.95e-09,2;UBERON:0007023,6.10e-09,114;UBERON:0007100,8.76e-09,27;UBERON:0003103,1.00e-07,68;UBERON:0002106,3.63e-07,3;UBERON:0004854,3.63e-07,3;UBERON:0009034,3.63e-07,3;UBERON:0002095,3.63e-07,3;UBERON:0004782,3.63e-07,3;UBERON:0003281,3.63e-07,3;UBERON:0009664,3.63e-07,3;UBERON:0002296,3.63e-07,3;UBERON:0005602,3.63e-07,3;UBERON:0001179,3.63e-07,3;UBERON:0006293,3.63e-07,3;UBERON:0002240,8.45e-07,3;UBERON:0005174,8.45e-07,3;UBERON:0001137,8.45e-07,3 | |||
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| ||
|short_description=p15@LIMCH1 | |short_description=p15@LIMCH1 | ||
}} | }} |
Latest revision as of 19:39, 17 September 2015
Short description: | p15@LIMCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_LIMCH1_5end |
Coexpression cluster: | C2793_spleen_left_giant_lung_tongue_heart_mesothelioma |
Association with transcript: | 24bp_to_ENST00000511496, uc003gvz.3, uc003gwa.3_5end |
EntrezGene: | LIMCH1 |
HGNC: | 29191 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 2.72e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 7.52e-14 | 3 |
valve | 1.37e-13 | 3 |
cardiac mesenchyme | 1.37e-13 | 3 |
cardial valve | 1.37e-13 | 3 |
tunica intima | 1.37e-13 | 3 |
heart layer | 1.37e-13 | 3 |
endocardium | 1.37e-13 | 3 |
endocardial cushion | 1.37e-13 | 3 |
presumptive endocardium | 1.37e-13 | 3 |
cardiac atrium | 4.66e-10 | 2 |
future cardiac atrium | 4.66e-10 | 2 |
atrioventricular valve | 5.81e-10 | 2 |
muscle structure | 6.63e-10 | 2 |
muscle organ | 6.63e-10 | 2 |
throat | 1.95e-09 | 2 |
adult organism | 6.10e-09 | 114 |
primary circulatory organ | 8.76e-09 | 27 |
compound organ | 1.00e-07 | 68 |
spleen | 3.63e-07 | 3 |
gastrointestinal system mesentery | 3.63e-07 | 3 |
stomach region | 3.63e-07 | 3 |
mesentery | 3.63e-07 | 3 |
gastrointestinal system serosa | 3.63e-07 | 3 |
mesentery of stomach | 3.63e-07 | 3 |
gut mesentery | 3.63e-07 | 3 |
dorsal mesentery | 3.63e-07 | 3 |
dorsal mesogastrium | 3.63e-07 | 3 |
peritoneal cavity | 3.63e-07 | 3 |
spleen primordium | 3.63e-07 | 3 |
spinal cord | 8.45e-07 | 3 |
dorsal region element | 8.45e-07 | 3 |
dorsum | 8.45e-07 | 3 |