FFCP PHASE1:Hg19::chr12:6485398..6485410,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:6485398..6485410,-
|short_description=p12@SCNN1A
|description=CAGE_peak_12_at_SCNN1A_5end
|association_with_transcript=-204bp_to_ENST00000536411_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6337 | |EntrezGene=6337 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10599 | |HGNC=10599 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-204bp_to_ENST00000536411_5end | |||
|cluster_id=chr12:6485398..6485410,- | |||
|coexpression_cluster_id=C2229 | |||
|description=CAGE_peak_12_at_SCNN1A_5end | |||
|id=chr12:6485398..6485410,- | |||
|ontology_enrichment_celltype=CL:0002076!3.41e-21!43;CL:0000066!2.84e-19!254;CL:0000223!6.33e-19!59;CL:0002251!4.30e-10!21;CL:0002368!1.19e-08!13 | |||
|ontology_enrichment_celltype_v019=CL:0000349;7.06e-25;19!CL:0002577;7.28e-24;3!CL:0002536;9.98e-17;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,6.34e-25,19;CL:0002577,4.58e-24,3;CL:0002536,4.91e-17,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.56e-16!106;DOID:0050687!2.72e-11!143;DOID:1749!3.63e-09!14;DOID:299!9.69e-07!25 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.74e-15!169;UBERON:0000925!1.74e-15!169;UBERON:0006595!1.74e-15!169;UBERON:0000077!2.89e-13!130;UBERON:0001007!1.39e-11!155;UBERON:0001555!1.39e-11!155;UBERON:0007026!1.39e-11!155;UBERON:0004921!1.79e-11!129;UBERON:0004185!1.79e-11!129;UBERON:0005156!7.97e-10!59;UBERON:0000990!7.97e-10!59;UBERON:0005631!2.53e-09!14;UBERON:0000158!2.53e-09!14;UBERON:0001004!4.95e-09!72;UBERON:0003101!1.21e-08!22;UBERON:0000079!1.21e-08!22;UBERON:0005153!2.65e-08!37;UBERON:0000065!2.93e-08!53;UBERON:0001041!1.21e-07!98;UBERON:0003124!1.50e-07!7;UBERON:0004175!1.58e-07!25;UBERON:0000922!1.94e-07!612;UBERON:0003133!2.12e-07!48;UBERON:0000466!2.96e-07!126;UBERON:0000344!4.15e-07!12;UBERON:0000062!4.38e-07!511;UBERON:0005911!9.05e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.75e-19;24!UBERON:0001987;4.66e-18;4!UBERON:0005631;1.37e-12;10!UBERON:0000158;1.37e-12;10!UBERON:0000305;1.41e-10;7!UBERON:0007195;5.97e-09;1!UBERON:0002171;5.97e-09;1!UBERON:0006518;5.97e-09;1!UBERON:0008949;5.97e-09;1!UBERON:0000101;5.97e-09;1!UBERON:0002167;5.97e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.00e-26,14;UBERON:0000158,2.00e-26,14;UBERON:0000478,1.61e-19,24;UBERON:0001987,3.29e-18,4;UBERON:0004340,3.29e-18,4;UBERON:0003124,8.10e-18,7;UBERON:0000305,9.35e-11,7;UBERON:0004871,1.80e-09,8;UBERON:0002171,5.31e-09,1;UBERON:0006518,5.31e-09,1;UBERON:0008949,5.31e-09,1;UBERON:0000101,5.31e-09,1;UBERON:0002167,5.31e-09,1;UBERON:0007195,7.85e-09,1 | |||
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| ||
|short_description=p12@SCNN1A | |||
}} | }} |
Latest revision as of 20:59, 19 September 2015
Short description: | p12@SCNN1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_SCNN1A_5end |
Coexpression cluster: | C2229_Amniotic_Placental_lung_thyroid_kidney_Small_testicular |
Association with transcript: | -204bp_to_ENST00000536411_5end |
EntrezGene: | SCNN1A |
HGNC: | 10599 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 6.34e-25 | 19 |
placental epithelial cell | 4.58e-24 | 3 |
amniotic epithelial cell | 4.91e-17 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.00e-26 | 14 |
membranous layer | 2.00e-26 | 14 |
extraembryonic structure | 1.61e-19 | 24 |
placenta | 3.29e-18 | 4 |
allantois | 3.29e-18 | 4 |
chorion | 8.10e-18 | 7 |
amnion | 9.35e-11 | 7 |
somatic layer of lateral plate mesoderm | 1.80e-09 | 8 |
lower lobe of right lung | 5.31e-09 | 1 |
right lung lobe | 5.31e-09 | 1 |
lower lobe of lung | 5.31e-09 | 1 |
lobe of lung | 5.31e-09 | 1 |
right lung | 5.31e-09 | 1 |
stroma of bone marrow | 7.85e-09 | 1 |