FFCP PHASE1:Hg19::chr12:65672443..65672553,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:65672443..65672553,+
|short_description=p1@MSRB3
|description=CAGE_peak_1_at_MSRB3_5end
|association_with_transcript=0bp_to_ENST00000535664,ENST0000053872...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=253827 | |EntrezGene=253827 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27375 | |HGNC=27375 | ||
|TSSclassifier=strong | |||
|UniProt=F5H6G9,F5H4C9 | |UniProt=F5H6G9,F5H4C9 | ||
|association_with_transcript=0bp_to_ENST00000535664,ENST00000538725,ENST00000540804,ENST00000541189,ENST00000541897,uc001ssm.2,uc001ssn.2,uc009zqp.2_5end | |||
|cluster_id=chr12:65672443..65672553,+ | |||
|coexpression_cluster_id=C3110 | |||
|description=CAGE_peak_1_at_MSRB3_5end | |||
|id=chr12:65672443..65672553,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.92e-25!180;CL:0000057!4.48e-17!75;CL:0000222!2.56e-12!119;CL:0000680!3.88e-12!57;CL:0000056!3.88e-12!57;CL:0000355!3.88e-12!57;CL:0000187!2.25e-11!54;CL:0000192!8.88e-11!42;CL:0000514!8.88e-11!42;CL:0000183!1.10e-10!59;CL:0000359!6.71e-10!32;CL:0000136!1.31e-08!15;CL:0000393!2.52e-08!60;CL:0000211!2.52e-08!60;CL:0002620!3.21e-08!23 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.29e-09;32!CL:0002620;2.40e-08;23!CL:0000192;3.44e-08;43!CL:0000136;7.72e-08;13!CL:0000057;2.37e-07;73!CL:0000187;8.35e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.87e-18,76;CL:0000222,9.02e-13,121;CL:0000680,1.94e-12,58;CL:0000056,1.94e-12,58;CL:0000355,1.94e-12,58;CL:0000187,1.15e-11,55;CL:0000192,4.69e-11,43;CL:0000514,4.69e-11,43;CL:0000359,5.42e-10,32;CL:0000136,1.10e-08,15;CL:0000393,1.76e-08,61;CL:0000211,1.76e-08,61;CL:0002620,2.71e-08,23 | |||
|ontology_enrichment_development_v019=CL:0000514;3.44e-08;43!CL:0000355;9.13e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!8.57e-20!84;UBERON:0002049!2.41e-16!79;UBERON:0007798!2.41e-16!79;UBERON:0000468!2.44e-16!659;UBERON:0001009!2.45e-16!113;UBERON:0000914!3.67e-16!83;UBERON:0002329!3.67e-16!83;UBERON:0003077!3.67e-16!83;UBERON:0003059!3.67e-16!83;UBERON:0007282!3.67e-16!83;UBERON:0009618!3.67e-16!83;UBERON:0007285!3.67e-16!83;UBERON:0000475!7.56e-16!365;UBERON:0000055!1.31e-15!69;UBERON:0001981!1.51e-15!60;UBERON:0007500!1.51e-15!60;UBERON:0004537!1.51e-15!60;UBERON:0006965!1.51e-15!60;UBERON:0004535!2.68e-15!110;UBERON:0000481!9.85e-15!347;UBERON:0002100!4.26e-14!216;UBERON:0002385!5.05e-14!63;UBERON:0001015!5.05e-14!63;UBERON:0000383!5.05e-14!63;UBERON:0004290!5.61e-14!70;UBERON:0000467!7.45e-14!625;UBERON:0000480!1.15e-13!626;UBERON:0001134!2.11e-13!61;UBERON:0002036!2.11e-13!61;UBERON:0003082!2.11e-13!61;UBERON:0005256!5.58e-13!143;UBERON:0003914!9.46e-13!118;UBERON:0000477!1.23e-12!286;UBERON:0000486!1.66e-12!82;UBERON:0003104!5.80e-12!238;UBERON:0009142!5.80e-12!238;UBERON:0001637!9.83e-12!42;UBERON:0003509!9.83e-12!42;UBERON:0004572!9.83e-12!42;UBERON:0000483!1.01e-10!309;UBERON:0000119!1.14e-10!312;UBERON:0004111!1.48e-10!241;UBERON:0007100!1.99e-10!27;UBERON:0000490!2.84e-10!138;UBERON:0004573!1.64e-09!33;UBERON:0004571!1.64e-09!33;UBERON:0000948!2.76e-09!24;UBERON:0005498!2.76e-09!24;UBERON:0004140!2.76e-09!24;UBERON:0009881!2.76e-09!24;UBERON:0004141!2.76e-09!24;UBERON:0003084!2.76e-09!24;UBERON:0007005!2.76e-09!24;UBERON:0004139!2.76e-09!24;UBERON:0004291!2.76e-09!24;UBERON:0000926!5.78e-09!448;UBERON:0004120!5.78e-09!448;UBERON:0006603!5.78e-09!448;UBERON:0003102!1.78e-08!95;UBERON:0000025!1.11e-07!194;UBERON:0002050!1.32e-07!605;UBERON:0005423!1.32e-07!605;UBERON:0000923!2.47e-07!604;UBERON:0005291!2.47e-07!604;UBERON:0006598!2.47e-07!604;UBERON:0002532!2.47e-07!604;UBERON:0003103!3.42e-07!69;UBERON:0000922!3.54e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;2.13e-10;25!UBERON:0000948;3.01e-09;22!UBERON:0004573;7.92e-09;33!UBERON:0004571;7.92e-09;33!UBERON:0001637;1.04e-08;42!UBERON:0003509;1.04e-08;42!UBERON:0004572;1.04e-08;42!UBERON:0007500;9.17e-08;56!UBERON:0001981;9.17e-08;56!UBERON:0004537;9.17e-08;56!UBERON:0000055;6.59e-07;65!UBERON:0002385;8.63e-07;31!UBERON:0001015;8.63e-07;31!UBERON:0000383;8.63e-07;31 | |||
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| ||
|short_description=p1@MSRB3 | |||
}} | }} |
Latest revision as of 22:24, 19 September 2015
Short description: | p1@MSRB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MSRB3_5end |
Coexpression cluster: | C3110_spindle_mesodermal_bone_Preadipocyte_basal_Sertoli_mesenchymal |
Association with transcript: | 0bp_to_ENST00000535664, ENST00000538725, ENST00000540804, ENST00000541189, ENST00000541897, uc001ssm.2, uc001ssn.2, uc009zqp.2_5end |
EntrezGene: | MSRB3 |
HGNC: | 27375 |
UniProt: | F5H6G9F5H4C9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.87e-18 | 76 |
mesodermal cell | 9.02e-13 | 121 |
muscle precursor cell | 1.94e-12 | 58 |
myoblast | 1.94e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.94e-12 | 58 |
muscle cell | 1.15e-11 | 55 |
smooth muscle cell | 4.69e-11 | 43 |
smooth muscle myoblast | 4.69e-11 | 43 |
vascular associated smooth muscle cell | 5.42e-10 | 32 |
fat cell | 1.10e-08 | 15 |
electrically responsive cell | 1.76e-08 | 61 |
electrically active cell | 1.76e-08 | 61 |
skin fibroblast | 2.71e-08 | 23 |