FFCP PHASE1:Hg19::chr1:33352024..33352035,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3208 | |EntrezGene=3208 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5144 | |HGNC=5144 | ||
|TSSclassifier=strong | |||
|UniProt=P84074 | |UniProt=P84074 | ||
|association_with_transcript=0bp_to_ENST00000373467_5end | |association_with_transcript=0bp_to_ENST00000373467_5end | ||
|cluster_id=chr1:33352024..33352035,+ | |||
|coexpression_cluster_id=C35 | |||
|description=CAGE_peak_3_at_HPCA_5end | |description=CAGE_peak_3_at_HPCA_5end | ||
|id=chr1:33352024..33352035,+ | |id=chr1:33352024..33352035,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000123;6.85e-08;2!CL:0000242;6.85e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,6.62e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.16e-13;82!UBERON:0010122;5.02e-09;2!UBERON:0006238;3.49e-08;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.56e-70!82;UBERON:0005743!3.25e-69!86;UBERON:0001049!2.00e-66!57;UBERON:0005068!2.00e-66!57;UBERON:0006241!2.00e-66!57;UBERON:0007135!2.00e-66!57;UBERON:0001893!1.12e-65!34;UBERON:0002780!1.49e-65!41;UBERON:0001890!1.49e-65!41;UBERON:0006240!1.49e-65!41;UBERON:0001869!1.58e-65!32;UBERON:0000955!4.33e-65!69;UBERON:0006238!4.33e-65!69;UBERON:0000073!2.40e-64!94;UBERON:0001016!2.40e-64!94;UBERON:0003080!8.44e-64!42;UBERON:0002791!4.88e-63!33;UBERON:0002020!9.26e-61!34;UBERON:0003528!9.26e-61!34;UBERON:0002616!1.66e-60!59;UBERON:0002619!1.01e-53!22;UBERON:0003075!3.16e-50!86;UBERON:0007284!3.16e-50!86;UBERON:0002346!7.75e-50!90;UBERON:0001950!1.66e-48!20;UBERON:0003056!6.64e-47!61;UBERON:0000956!9.07e-47!25;UBERON:0000203!9.07e-47!25;UBERON:0000924!2.94e-35!173;UBERON:0006601!2.94e-35!173;UBERON:0000033!3.38e-35!123;UBERON:0007023!5.92e-35!115;UBERON:0004121!7.13e-35!169;UBERON:0000153!5.18e-33!129;UBERON:0007811!5.18e-33!129;UBERON:0002420!7.10e-20!9;UBERON:0007245!7.10e-20!9;UBERON:0010009!7.10e-20!9;UBERON:0010011!7.10e-20!9;UBERON:0000454!7.10e-20!9;UBERON:0000200!1.08e-16!6;UBERON:0000025!1.21e-16!194;UBERON:0001871!2.12e-16!7;UBERON:0009663!3.56e-15!7;UBERON:0002308!3.89e-15!9;UBERON:0000125!3.89e-15!9;UBERON:0000349!2.45e-14!5;UBERON:0001872!6.89e-14!5;UBERON:0002021!1.00e-13!5;UBERON:0000369!8.15e-13!4;UBERON:0002435!8.15e-13!4;UBERON:0000204!8.15e-13!4;UBERON:0010082!8.15e-13!4;UBERON:0004111!3.19e-11!241;UBERON:0000064!5.63e-11!219;UBERON:0000483!9.30e-11!309;UBERON:0000119!1.55e-10!312;UBERON:0005383!4.97e-10!3;UBERON:0005382!4.97e-10!3;UBERON:0002771!6.01e-09!3;UBERON:0000477!2.05e-08!286;UBERON:0000475!2.20e-07!365;UBERON:0001873!3.06e-07!2;UBERON:0010122!3.06e-07!2;UBERON:0003076!4.53e-07!15;UBERON:0003057!4.53e-07!15;UBERON:0001870!7.90e-07!2;UBERON:0001954!8.36e-07!2;UBERON:0003022!8.36e-07!2;UBERON:0002421!8.36e-07!2;UBERON:0002600!8.36e-07!2;UBERON:0001875!9.90e-07!2;UBERON:0006514!9.90e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.14e-71;32!UBERON:0001893;6.96e-70;34!UBERON:0002791;1.46e-66;32!UBERON:0002619;3.06e-64;22!UBERON:0003528;5.93e-61;34!UBERON:0002020;5.93e-61;34!UBERON:0002780;1.67e-57;41!UBERON:0001890;1.67e-57;41!UBERON:0001950;1.68e-57;20!UBERON:0000956;3.46e-56;25!UBERON:0000203;3.46e-56;25!UBERON:0000073;3.52e-36;53!UBERON:0002616;3.52e-36;53!UBERON:0001017;1.80e-32;75!UBERON:0000955;3.39e-31;68!UBERON:0001016;1.70e-24;83!UBERON:0000200;1.70e-21;6!UBERON:0002420;2.40e-20;9!UBERON:0007245;2.40e-20;9!UBERON:0010009;2.40e-20;9!UBERON:0010011;2.40e-20;9!UBERON:0000454;2.40e-20;9!UBERON:0009663;1.23e-19;7!UBERON:0001872;1.07e-17;5!UBERON:0002021;1.66e-17;5!UBERON:0000369;2.43e-16;4!UBERON:0002435;2.43e-16;4!UBERON:0000204;2.43e-16;4!UBERON:0000125;4.17e-15;9!UBERON:0002308;4.17e-15;9!UBERON:0001871;3.71e-13;6!UBERON:0005383;1.10e-12;3!UBERON:0005382;1.10e-12;3!UBERON:0000349;2.08e-12;5!UBERON:0001870;1.32e-11;3!UBERON:0011216;1.43e-10;132!UBERON:0007023;2.64e-09;114!UBERON:0001873;5.02e-09;2!UBERON:0001875;2.01e-08;2!UBERON:0006514;2.01e-08;2!UBERON:0001954;2.25e-08;2!UBERON:0003022;2.25e-08;2!UBERON:0002421;2.25e-08;2!UBERON:0002600;2.25e-08;2!UBERON:0002771;3.47e-08;2!UBERON:0002702;4.55e-08;2!UBERON:0001897;5.25e-08;2!UBERON:0010225;5.25e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002780,7.11e-82,41;UBERON:0001890,7.11e-82,41;UBERON:0003080,7.11e-82,41;UBERON:0006240,7.11e-82,41;UBERON:0001893,3.77e-81,34;UBERON:0001869,1.09e-80,32;UBERON:0002791,1.15e-74,32;UBERON:0001017,3.35e-71,81;UBERON:0003528,5.46e-70,34;UBERON:0002020,5.46e-70,34;UBERON:0000955,1.02e-66,68;UBERON:0006238,1.02e-66,68;UBERON:0001016,1.53e-66,89;UBERON:0000073,6.87e-66,53;UBERON:0002616,6.87e-66,53;UBERON:0001049,7.55e-66,56;UBERON:0005068,7.55e-66,56;UBERON:0006241,7.55e-66,56;UBERON:0007135,7.55e-66,56;UBERON:0002619,2.48e-64,22;UBERON:0001950,1.61e-57,20;UBERON:0003056,1.54e-56,61;UBERON:0000956,2.88e-56,25;UBERON:0000203,2.88e-56,25;UBERON:0003075,1.92e-45,82;UBERON:0007284,1.92e-45,82;UBERON:0002346,6.04e-43,86;UBERON:0010371,1.31e-38,104;UBERON:0004121,8.51e-34,171;UBERON:0000924,8.51e-34,171;UBERON:0006601,8.51e-34,171;UBERON:0007023,4.50e-27,114;UBERON:0010314,8.60e-27,132;UBERON:0011216,3.37e-26,223;UBERON:0000200,1.93e-21,6;UBERON:0002420,2.70e-20,9;UBERON:0007245,2.70e-20,9;UBERON:0010009,2.70e-20,9;UBERON:0010011,2.70e-20,9;UBERON:0000454,2.70e-20,9;UBERON:0009663,1.40e-19,7;UBERON:0001872,9.44e-18,5;UBERON:0002021,1.55e-17,5;UBERON:0000369,2.43e-16,4;UBERON:0002435,2.43e-16,4;UBERON:0000204,2.43e-16,4;UBERON:0010082,2.43e-16,4;UBERON:0000125,4.59e-15,9;UBERON:0002308,4.59e-15,9;UBERON:0000025,1.49e-14,192;UBERON:0001871,4.11e-13,6;UBERON:0005383,1.11e-12,3;UBERON:0005382,1.11e-12,3;UBERON:0000349,1.80e-12,5;UBERON:0001870,1.32e-11,3;UBERON:0004111,5.26e-10,240;UBERON:0001873,5.02e-09,2;UBERON:0010122,5.02e-09,2;UBERON:0000483,9.03e-09,306;UBERON:0000119,1.34e-08,309;UBERON:0001954,1.87e-08,2;UBERON:0003022,1.87e-08,2;UBERON:0002421,1.87e-08,2;UBERON:0002600,1.87e-08,2;UBERON:0001875,2.33e-08,2;UBERON:0006514,2.33e-08,2;UBERON:0002771,3.87e-08,2;UBERON:0001897,4.16e-08,2;UBERON:0010225,4.16e-08,2;UBERON:0002702,4.47e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22664428346111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54657762555539,1.00509759200609,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,7.95318118213038,0.844016498463076,0,0,0,0,0,2.77126022639704,0,0,0,0,0,0,0,0,0,10.6626602070474,5.10224539890182,7.98455192004777,0,0,0,0,0,0,6.55012409158783,4.95727842751532,3.64612489359914,56.6874486920857,17.0040978461825,0,1.87984741883082,0.591095237907095,6.14279112031123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61762719153625,0,37.4823113160543,0,0,0,0,0,5.50930970934882,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35588444468319,0,0,10.1930381488965,0,0,0,0,0,0,0.686379991447858,0,0,0,0,0,0,0,24.0168115483916,2.0535806833799,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,15.9045937961861,2.86027152834309,0,0,0,0,0,15.6733856177704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.43034089983493,6.22333951000012,2.754200475543,0,0.221858103073705,0.0620964029413835,1.24513771442608,0,0,0,0,1.40500471742064,4.92731497276806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07387654227596,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,3.06946491128764,0,0,0,0,0.425149840203366,0,0,0,0,0,0,0,33.0780509246767,2.8339315265117,1.43670473151436,5.74325819874114,1.26035848110859,13.6931359879151,3.06803726700517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.49667189264181,2.34323429584154,2.06686796501184,6.72207588055412,1.64092442705466,0,0,0,0,0,0,0,0,0,0,0,0.339848664884159,9.40550661948742,0,0,0,29.5377309042084,0,0,0,0,0.500335809236594,8.21670781010178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935757853848423,3.780064728066,0,0,4.28768015307174,0.150962843566674,0,0,0,0,0,0,0,1.2679671827502,0,0,0,0,0,0,0,0,0,0,0,15.4340682733376,3.05445483238264,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,1.65833887891756,6.61971173516129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22664428346111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54657762555539,1.00509759200609,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,7.95318118213038,0.844016498463076,0,0,0,0,0,2.77126022639704,0,0,0,0,0,0,0,0,0,10.6626602070474,5.10224539890182,7.98455192004777,0,0,0,0,0,0,6.55012409158783,4.95727842751532,3.64612489359914,56.6874486920857,17.0040978461825,0,1.87984741883082,0.591095237907095,6.14279112031123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61762719153625,0,37.4823113160543,0,0,0,0,0,5.50930970934882,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35588444468319,0,0,10.1930381488965,0,0,0,0,0,0,0.686379991447858,0,0,0,0,0,0,0,24.0168115483916,2.0535806833799,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,15.9045937961861,2.86027152834309,0,0,0,0,0,15.6733856177704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.43034089983493,6.22333951000012,2.754200475543,0,0.221858103073705,0.0620964029413835,1.24513771442608,0,0,0,0,1.40500471742064,4.92731497276806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07387654227596,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,3.06946491128764,0,0,0,0,0.425149840203366,0,0,0,0,0,0,0,33.0780509246767,2.8339315265117,1.43670473151436,5.74325819874114,1.26035848110859,13.6931359879151,3.06803726700517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.49667189264181,2.34323429584154,2.06686796501184,6.72207588055412,1.64092442705466,0,0,0,0,0,0,0,0,0,0,0,0.339848664884159,9.40550661948742,0,0,0,29.5377309042084,0,0,0,0,0.500335809236594,8.21670781010178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935757853848423,3.780064728066,0,0,4.28768015307174,0.150962843566674,0,0,0,0,0,0,0,1.2679671827502,0,0,0,0,0,0,0,0,0,0,0,15.4340682733376,3.05445483238264,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,1.65833887891756,6.61971173516129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p3@HPCA | |short_description=p3@HPCA | ||
}} | }} |
Latest revision as of 16:08, 17 September 2015
Short description: | p3@HPCA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HPCA_5end |
Coexpression cluster: | C35_caudate_putamen_diencephalon_nucleus_globus_thalamus_insula |
Association with transcript: | 0bp_to_ENST00000373467_5end |
EntrezGene: | HPCA |
HGNC: | 5144 |
UniProt: | P84074 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 6.62e-08 | 2 |