FFCP PHASE1:Hg19::chr13:100633838..100633854,-: Difference between revisions
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|id=chr13:100633838..100633854,-
|short_description=p@chr13:100633838..100633854,-
|description=CAGE_peak_at_chr13:100633838..100633854,-
|association_with_transcri...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr13:100633838..100633854,- | |||
|coexpression_cluster_id=C1375 | |||
|description=CAGE_peak_at_chr13:100633838..100633854,- | |||
|id=chr13:100633838..100633854,- | |||
|ontology_enrichment_celltype=CL:0002319!9.15e-17!25;CL:0000133!8.33e-11!59;CL:0000128!7.81e-10!7;CL:0000126!7.81e-10!7;CL:0000127!7.81e-10!7;CL:0002453!7.81e-10!7;CL:0000095!1.32e-09!17;CL:0000123!1.32e-09!17;CL:0000047!2.56e-09!8;CL:0000243!3.14e-09!15;CL:0000125!3.14e-09!15;CL:0000030!3.14e-09!15;CL:0000339!3.14e-09!15;CL:0000221!9.89e-08!71 | |||
|ontology_enrichment_celltype_v019=CL:0000047;3.75e-18;2!CL:0002575;3.75e-18;2!CL:0002603;2.00e-12;3!CL:0002319;3.69e-11;25!CL:0000669;1.52e-09;4!CL:0000333;8.31e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002575,9.79e-18,2;CL:0002603,1.41e-12,3;CL:0002319,3.43e-11,25;CL:0000047,2.38e-10,8;CL:0000133,3.09e-10,59;CL:0000669,2.44e-09,4;CL:0000221,3.26e-08,72;CL:0000333,7.86e-07,41 | |||
|ontology_enrichment_development_v019=UBERON:0006215;8.13e-28;3 | |||
|ontology_enrichment_disease=DOID:162!2.34e-16!235;DOID:14566!1.51e-15!239;DOID:0050687!8.47e-15!143;DOID:305!1.60e-08!106;DOID:171!2.56e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:171;1.44e-21;10!DOID:3095;9.58e-10;22!DOID:2994;9.58e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.16e-21,10;DOID:3095,8.73e-10,22;DOID:2994,8.73e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0001017!2.92e-22!82;UBERON:0000073!5.20e-22!94;UBERON:0001016!5.20e-22!94;UBERON:0005743!1.24e-21!86;UBERON:0002346!8.85e-18!90;UBERON:0000955!6.44e-16!69;UBERON:0006238!6.44e-16!69;UBERON:0000924!3.59e-15!173;UBERON:0006601!3.59e-15!173;UBERON:0003075!1.89e-14!86;UBERON:0007284!1.89e-14!86;UBERON:0002616!7.22e-13!59;UBERON:0004121!1.16e-12!169;UBERON:0001049!1.77e-12!57;UBERON:0005068!1.77e-12!57;UBERON:0006241!1.77e-12!57;UBERON:0007135!1.77e-12!57;UBERON:0000033!5.56e-11!123;UBERON:0000153!1.89e-10!129;UBERON:0007811!1.89e-10!129;UBERON:0002037!3.31e-10!6;UBERON:0006215!3.31e-10!6;UBERON:0004733!3.91e-09!12;UBERON:0002028!3.91e-09!12;UBERON:0007277!3.91e-09!12;UBERON:0003056!8.96e-09!61;UBERON:0002680!2.66e-08!9;UBERON:0001895!2.66e-08!9;UBERON:0010092!2.66e-08!9;UBERON:0004732!3.00e-08!13;UBERON:0002780!7.64e-08!41;UBERON:0001890!7.64e-08!41;UBERON:0006240!7.64e-08!41;UBERON:0003080!1.54e-07!42;UBERON:0003076!7.61e-07!15;UBERON:0003057!7.61e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;8.74e-37;6!UBERON:0002680;1.59e-24;9!UBERON:0001895;1.59e-24;9!UBERON:0002346;2.90e-20;4!UBERON:0000923;2.90e-20;4!UBERON:0010316;2.90e-20;4!UBERON:0005291;2.90e-20;4!UBERON:0004733;2.23e-18;12!UBERON:0002028;2.23e-18;12!UBERON:0004732;5.87e-17;13!UBERON:0002050;2.45e-16;5!UBERON:0005423;2.45e-16;5!UBERON:0000013;8.31e-08;5!UBERON:0002410;8.31e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,5.86e-37,6;UBERON:0006215,5.86e-37,6;UBERON:0002680,1.22e-24,9;UBERON:0001895,1.22e-24,9;UBERON:0010092,1.22e-24,9;UBERON:0004733,1.83e-18,12;UBERON:0002028,1.83e-18,12;UBERON:0007277,1.83e-18,12;UBERON:0004732,4.90e-17,13;UBERON:0003076,9.47e-15,15;UBERON:0003057,9.47e-15,15;UBERON:0001016,8.86e-10,89;UBERON:0004121,9.66e-09,171;UBERON:0000924,9.66e-09,171;UBERON:0006601,9.66e-09,171;UBERON:0002346,1.39e-08,86;UBERON:0000013,6.77e-08,5;UBERON:0002410,6.77e-08,5;UBERON:0001017,2.59e-07,81 | |||
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| ||
|short_description=p@chr13:100633838..100633854,- | |||
}} | }} |
Latest revision as of 14:11, 24 July 2015
Short description: | p@chr13:100633838..100633854, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:100633838..100633854, - |
Coexpression cluster: | C1375_cerebellum_Pericytes_extraskeletal_neuroblastoma_teratocarcinoma_neuroectodermal_H9 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system pericyte | 9.79e-18 | 2 |
astrocyte of the cerebellum | 1.41e-12 | 3 |
neural cell | 3.43e-11 | 25 |
neuronal stem cell | 2.38e-10 | 8 |
neurectodermal cell | 3.09e-10 | 59 |
pericyte cell | 2.44e-09 | 4 |
ectodermal cell | 3.26e-08 | 72 |
migratory neural crest cell | 7.86e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 5.86e-37 | 6 |
rhombic lip | 5.86e-37 | 6 |
regional part of metencephalon | 1.22e-24 | 9 |
metencephalon | 1.22e-24 | 9 |
future metencephalon | 1.22e-24 | 9 |
segmental subdivision of hindbrain | 1.83e-18 | 12 |
hindbrain | 1.83e-18 | 12 |
presumptive hindbrain | 1.83e-18 | 12 |
segmental subdivision of nervous system | 4.90e-17 | 13 |
posterior neural tube | 9.47e-15 | 15 |
chordal neural plate | 9.47e-15 | 15 |
nervous system | 8.86e-10 | 89 |
ectoderm-derived structure | 9.66e-09 | 171 |
ectoderm | 9.66e-09 | 171 |
presumptive ectoderm | 9.66e-09 | 171 |
neurectoderm | 1.39e-08 | 86 |
sympathetic nervous system | 6.77e-08 | 5 |
autonomic nervous system | 6.77e-08 | 5 |
central nervous system | 2.59e-07 | 81 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.16e-21 | 10 |
germ cell and embryonal cancer | 8.73e-10 | 22 |
germ cell cancer | 8.73e-10 | 22 |