FFCP PHASE1:Hg19::chr13:100638100..100638115,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:100638100..100638115,+
|short_description=p4@ZIC2
|description=CAGE_peak_4_at_ZIC2_5end
|association_with_transcript=179bp_to_AF188733_5end
|EntrezGene=7...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7546 | |EntrezGene=7546 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12873 | |HGNC=12873 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=179bp_to_AF188733_5end | |||
|cluster_id=chr13:100638100..100638115,+ | |||
|coexpression_cluster_id=C1024 | |||
|description=CAGE_peak_4_at_ZIC2_5end | |||
|id=chr13:100638100..100638115,+ | |||
|ontology_enrichment_celltype=CL:0002319!3.99e-10!25;CL:0000133!3.48e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002319;2.38e-11;25!CL:0002322;5.93e-09;5!CL:0000128;4.19e-07;7!CL:0000126;4.19e-07;7!CL:0000127;4.19e-07;7!CL:0000095;8.69e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.16e-11,25;CL:0000133,2.69e-10,59;CL:0002322,5.69e-09,5;CL:0000221,3.23e-07,72;CL:0000128,4.13e-07,7;CL:0000126,4.13e-07,7;CL:0000127,4.13e-07,7;CL:0002453,4.13e-07,7;CL:0000095,8.45e-07,17;CL:0000123,8.45e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.86e-27!235;DOID:0050687!3.35e-26!143;DOID:14566!7.76e-26!239;DOID:305!2.16e-18!106;DOID:3095!9.27e-10!22;DOID:2994!9.27e-10!22;DOID:0050686!2.10e-09!137;DOID:299!6.60e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:3095;4.31e-08;22!DOID:2994;4.31e-08;22!DOID:171;9.34e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.24e-09,235;DOID:0050687,1.54e-09,143;DOID:14566,4.32e-09,239;DOID:3095,4.44e-08,22;DOID:2994,4.44e-08,22;DOID:171,1.00e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0001017!3.77e-36!82;UBERON:0005743!1.66e-34!86;UBERON:0000073!4.08e-33!94;UBERON:0001016!4.08e-33!94;UBERON:0000955!2.14e-28!69;UBERON:0006238!2.14e-28!69;UBERON:0002346!4.03e-26!90;UBERON:0002616!5.29e-25!59;UBERON:0001049!1.57e-24!57;UBERON:0005068!1.57e-24!57;UBERON:0006241!1.57e-24!57;UBERON:0007135!1.57e-24!57;UBERON:0003075!6.14e-23!86;UBERON:0007284!6.14e-23!86;UBERON:0000924!3.30e-20!173;UBERON:0006601!3.30e-20!173;UBERON:0004121!8.22e-18!169;UBERON:0000033!1.13e-17!123;UBERON:0000153!2.69e-16!129;UBERON:0007811!2.69e-16!129;UBERON:0001893!2.90e-15!34;UBERON:0002780!4.04e-15!41;UBERON:0001890!4.04e-15!41;UBERON:0006240!4.04e-15!41;UBERON:0002020!4.23e-15!34;UBERON:0003528!4.23e-15!34;UBERON:0002791!6.55e-15!33;UBERON:0003056!7.76e-15!61;UBERON:0003080!1.71e-14!42;UBERON:0001869!3.60e-14!32;UBERON:0000956!4.21e-14!25;UBERON:0000203!4.21e-14!25;UBERON:0002619!3.20e-12!22;UBERON:0003076!3.91e-12!15;UBERON:0003057!3.91e-12!15;UBERON:0001950!7.91e-11!20;UBERON:0004733!1.17e-10!12;UBERON:0002028!1.17e-10!12;UBERON:0007277!1.17e-10!12;UBERON:0004732!1.65e-09!13;UBERON:0002680!1.18e-08!9;UBERON:0001895!1.18e-08!9;UBERON:0010092!1.18e-08!9;UBERON:0002037!2.73e-07!6;UBERON:0006215!2.73e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;5.93e-15;25!UBERON:0000203;5.93e-15;25!UBERON:0000073;2.57e-12;53!UBERON:0002616;2.57e-12;53!UBERON:0002619;3.51e-12;22!UBERON:0003528;3.65e-12;34!UBERON:0002020;3.65e-12;34!UBERON:0001893;5.19e-12;34!UBERON:0004733;8.94e-12;12!UBERON:0002028;8.94e-12;12!UBERON:0002791;1.21e-11;32!UBERON:0001869;3.98e-11;32!UBERON:0004732;1.17e-10;13!UBERON:0002680;1.24e-10;9!UBERON:0001895;1.24e-10;9!UBERON:0000955;1.36e-10;68!UBERON:0001016;2.88e-10;83!UBERON:0001950;3.08e-10;20!UBERON:0002037;4.69e-10;6!UBERON:0001017;1.24e-09;75!UBERON:0002780;2.22e-08;41!UBERON:0001890;2.22e-08;41!UBERON:0002346;1.77e-07;4!UBERON:0000923;1.77e-07;4!UBERON:0010316;1.77e-07;4!UBERON:0005291;1.77e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.00e-30,89;UBERON:0001017,5.55e-30,81;UBERON:0000955,4.01e-23,68;UBERON:0006238,4.01e-23,68;UBERON:0002346,1.03e-22,86;UBERON:0004121,4.06e-20,171;UBERON:0000924,4.06e-20,171;UBERON:0006601,4.06e-20,171;UBERON:0000073,9.53e-20,53;UBERON:0002616,9.53e-20,53;UBERON:0001049,1.12e-19,56;UBERON:0005068,1.12e-19,56;UBERON:0006241,1.12e-19,56;UBERON:0007135,1.12e-19,56;UBERON:0003075,8.47e-19,82;UBERON:0007284,8.47e-19,82;UBERON:0000956,9.31e-15,25;UBERON:0000203,9.31e-15,25;UBERON:0010371,4.26e-13,104;UBERON:0001893,4.38e-13,34;UBERON:0003056,4.74e-13,61;UBERON:0003528,5.21e-13,34;UBERON:0002020,5.21e-13,34;UBERON:0002791,6.73e-13,32;UBERON:0002619,4.21e-12,22;UBERON:0004733,9.87e-12,12;UBERON:0002028,9.87e-12,12;UBERON:0007277,9.87e-12,12;UBERON:0001869,1.22e-11,32;UBERON:0002780,3.90e-11,41;UBERON:0001890,3.90e-11,41;UBERON:0003080,3.90e-11,41;UBERON:0006240,3.90e-11,41;UBERON:0003076,7.55e-11,15;UBERON:0003057,7.55e-11,15;UBERON:0004732,1.28e-10,13;UBERON:0002680,1.38e-10,9;UBERON:0001895,1.38e-10,9;UBERON:0010092,1.38e-10,9;UBERON:0002037,3.05e-10,6;UBERON:0006215,3.05e-10,6;UBERON:0001950,3.38e-10,20;UBERON:0011216,2.16e-09,223;UBERON:0010314,2.97e-09,132 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,9.48032147191267,1.83600622119828,8.77673220138646,2.0036519099174,1.36874425072884,1.12988375635323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.90104165297695,2.4390233720882,1.84453049955565,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.99479511228274,4.60940739583999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,6.95250124938694,11.6626196122907,8.8307396580834,5.70135802584537,11.6067591402789,17.5189132356398,0,0,0,0,0,1.53798840051797,0.505754070234305,0.964044119533928,0.992645754591546,1.30727666455444,1.18635309555548,0.808987848960987,0,0,0,0,0,0,0,0,0,0,0.122988438543114,2.57351715447788,0,0,0,0,0,0,2.88662684050547,9.27443239800615,0.587043471179108,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,2.5790149399433,3.48768055066624,3.9602674343313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19812427745791,3.44585807502342,0,0,0,0,0,0,0,0,1.01637849688985,0,0.773288812777695,1.34013012267479,1.27587750330633,0,0,0,0.12269149171914,0.500170521059677,0,0,0.178428988797162,0,0,0,0,0,0,0,0,21.3423261634387,15.7845974952994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.915694648183434,0.742585499285292,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,5.58237554039501,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7774258493143,2.88743956579008,0,0,0.144269212976445,0.924843963529383,0.797131363644112,0,0,1.05836791361941,0,0,1.14117339516596,0,0,1.18504244461122,0.481764225311099,0,0,0,1.53620382154229,2.90778940260141,2.83643540910244,0,1.11362469558097,1.23087398947712,1.89318974933188,0,0,0.18714054040822,0,0.121360521749513,0,5.96685908293468,0,0,0,1.9882952955326,1.54736358051564,0,1.6480387422676,0,0,0,0.251932747854276,0,0,0,0,1.9692329214317,0,0,0,0,1.93866549219044,0.649376687132959,0,1.30213880542617,0,0,0.796554137998498,0.254253650292766,4.01859059005492,0,0.874813840149763,0.868124974666461,0,0.120596438625408,10.6807215421958,15.5916756503027,16.5506666613987,4.38770794307945,1.0893846351899,1.53366118706464,0,0,1.1528195219403,0.538545866458633,0.108647371922008,0,0,0,0,0,0,0,0.588187602953219,0.335643173951685,0.75901493089674,0,1.89898258075224,0.816164040795739,0,0,0,0,0,0.296521128680622,0.494255755786011,0.313265848516366,1.21322039365219,0,0.702793337176017,0.91227394607833,0.19566461893209,0,0,0,2.14250933141343,4.29668741473718,1.65355761355942,6.32497967523208,1.32930774541437,1.323967823502,1.2557316736289,2.38944859545918,3.41531455235751,0.277349346026277,6.42171031839984,0,1.04471047896483,0,1.54787429224455,1.35458863804719,2.33885814675794,1.47807822695777,0,13.6796996371825,1.12990370390266,0.411125773940253,1.19228767021794,1.07628353124994,0,0.561111741760736,0,1.19885765749278,0.864542502924636,0.687219576995494,0.171594997861965,0.14405479798815,0.869767748958028,1.88555227693436,1.08723364858891,2.61507115780833,1.73396969981747,0.577901179803038,0,0.273810757783986,0,0,0.262887354279314,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0,3.14967940847196,0,4.77137813885582,1.22583065500418,15.5930554011069,17.054890138057,17.4484941972258,0,0,0.607495566580247,1.34173875039706,0,0.0524545881349981,0.528001682597033,0.179287339332845,1.53532157855556,0,0,0,0,0,0,0,0,0.511164065356265,0,0,0,0.258565912723101,1.05786081394152,0.684347351537318,0,0,0,0,0,0.790446527591777,0,1.91502377331055,0,0,0,0,2.04170325125305,0.886068179966986,1.09823638411767,1.1267183763585,2.86704597845036,3.10601344303186,0.807253238237985,0.138348634936231,0.249960815924213,0,0.285465333544967,1.17632909849086,0,1.44921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,1.04397716786085,0.453411851024545,0,0,0.179088841081487,0,0,0.176689145945881,0.578742114812744,0,0.76872455576384,0.345430341731199,0,1.24432592536558,0,0,0,0,0.737318726261158,0.422624246717254,0,0,0.172214979660816,0.567515953566836,0.920529751259204,0,0,0,0,16.5129238948691,8.40914214078507,6.61956866820698,6.80239744325385,15.2440990038573,3.35186950783946,0,1.49837315502381,0,0,0,1.09189682663981,1.41696576325585,1.91560630868582,0,1.51243017733031,1.24483054435592,1.61475645631851,0,1.57036349601641,1.76954585021611,0.733714394086716,1.61735932610474,0,0.690359926060101,0.198916222116275,0,1.0085253435176,0,0.261906694481422,0.327543835020193,0.739280431085226,0.540300676947157,1.56215619722769,2.48024155801421,0.951237152908602,1.09394961803644,0,0,6.8589785300252,0.383287282918786,0,0.336283722218824,0,0,0,0,0,3.3984866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| ||
|short_description=p4@ZIC2 | |||
}} | }} |
Latest revision as of 08:02, 16 September 2015
Short description: | p4@ZIC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ZIC2_5end |
Coexpression cluster: | C1024_Pericytes_cerebellum_neuroblastoma_HES3GFP_iPS_extraskeletal_teratocarcinoma |
Association with transcript: | 179bp_to_AF188733_5end |
EntrezGene: | ZIC2 |
HGNC: | 12873 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.16e-11 | 25 |
neurectodermal cell | 2.69e-10 | 59 |
embryonic stem cell | 5.69e-09 | 5 |
ectodermal cell | 3.23e-07 | 72 |
oligodendrocyte | 4.13e-07 | 7 |
macroglial cell | 4.13e-07 | 7 |
astrocyte | 4.13e-07 | 7 |
oligodendrocyte precursor cell | 4.13e-07 | 7 |
neuron associated cell | 8.45e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 8.45e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.24e-09 | 235 |
cell type cancer | 1.54e-09 | 143 |
disease of cellular proliferation | 4.32e-09 | 239 |
germ cell and embryonal cancer | 4.44e-08 | 22 |
germ cell cancer | 4.44e-08 | 22 |
neuroectodermal tumor | 1.00e-07 | 10 |