FFCP PHASE1:Hg19::chr6:152589245..152589256,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23345 | |EntrezGene=23345 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |HGNC=17089 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=49bp_to_ENST00000545694_5end | |association_with_transcript=49bp_to_ENST00000545694_5end | ||
|cluster_id=chr6:152589245..152589256,- | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_53_at_SYNE1_5end | |description=CAGE_peak_53_at_SYNE1_5end | ||
|id=chr6:152589245..152589256,- | |id=chr6:152589245..152589256,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000138;4.27e-34;6!CL:0000153;2.62e-23;9!CL:0000447;2.62e-23;9!CL:0000327;1.22e-14;15!CL:0000499;1.52e-08;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,4.27e-34,6;CL:0000138,4.27e-34,6;CL:0000153,2.62e-23,9;CL:0000447,2.62e-23,9;CL:0000327,1.22e-14,15;CL:0000499,1.52e-08,28;CL:0000151,5.81e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3371!3.74e-10!1;DOID:4549!3.74e-10!1;DOID:5861!3.74e-10!1;DOID:6496!3.74e-10!1 | |||
|ontology_enrichment_disease_v019=DOID:3371;5.42e-195;1!DOID:4549;5.42e-195;1!DOID:5861;5.42e-195;1!DOID:6496;5.42e-195;1!DOID:201;4.27e-34;6!DOID:0060100;4.27e-34;6!DOID:1115;2.29e-11;20 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,5.42e-195,1;DOID:4549,5.42e-195,1;DOID:5861,5.42e-195,1;DOID:6496,5.42e-195,1;DOID:201,4.27e-34,6;DOID:0060100,4.27e-34,6;DOID:1115,2.29e-11,20 | |||
|ontology_enrichment_uberon=UBERON:0001873!7.43e-18!2;UBERON:0010122!7.43e-18!2;UBERON:0005383!3.19e-12!3;UBERON:0005382!3.19e-12!3;UBERON:0002771!6.96e-12!3;UBERON:0001049!3.17e-10!57;UBERON:0005068!3.17e-10!57;UBERON:0006241!3.17e-10!57;UBERON:0007135!3.17e-10!57;UBERON:0006834!4.87e-10!1;UBERON:0007023!6.46e-10!115;UBERON:0002616!7.66e-10!59;UBERON:0001871!7.83e-10!7;UBERON:0000369!2.17e-09!4;UBERON:0002435!2.17e-09!4;UBERON:0000204!2.17e-09!4;UBERON:0010082!2.17e-09!4;UBERON:0002420!5.83e-09!9;UBERON:0007245!5.83e-09!9;UBERON:0010009!5.83e-09!9;UBERON:0010011!5.83e-09!9;UBERON:0000454!5.83e-09!9;UBERON:0002308!6.16e-09!9;UBERON:0000125!6.16e-09!9;UBERON:0000955!4.07e-08!69;UBERON:0006238!4.07e-08!69;UBERON:0002020!4.45e-08!34;UBERON:0003528!4.45e-08!34;UBERON:0001046!4.05e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0002418;2.39e-66;3!UBERON:0004755;2.39e-66;3!UBERON:0001474;1.85e-12;18!UBERON:0004765;4.34e-09;26!UBERON:0001434;2.32e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,2.39e-66,3;UBERON:0004755,2.39e-66,3 | |||
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|short_description=p53@SYNE1 | |short_description=p53@SYNE1 | ||
}} | }} |
Latest revision as of 06:22, 16 September 2015
Short description: | p53@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_53_at_SYNE1_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | 49bp_to_ENST00000545694_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 4.27e-34 | 6 |
chondrocyte | 4.27e-34 | 6 |
GAG secreting cell | 2.62e-23 | 9 |
carbohydrate secreting cell | 2.62e-23 | 9 |
extracellular matrix secreting cell | 1.22e-14 | 15 |
stromal cell | 1.52e-08 | 28 |
secretory cell | 5.81e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 2.39e-66 | 3 |
skeletal tissue | 2.39e-66 | 3 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 5.42e-195 | 1 |
extraosseous chondrosarcoma | 5.42e-195 | 1 |
myxoid chondrosarcoma | 5.42e-195 | 1 |
extraskeletal myxoid chondrosarcoma | 5.42e-195 | 1 |
connective tissue cancer | 4.27e-34 | 6 |
musculoskeletal system cancer | 4.27e-34 | 6 |
sarcoma | 2.29e-11 | 20 |