FFCP PHASE1:Hg19::chr7:107643567..107643657,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3912 | |EntrezGene=3912 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6486 | |HGNC=6486 | ||
|TSSclassifier=strong | |||
|UniProt=E9PCS6,E7EPA6,C9J296 | |UniProt=E9PCS6,E7EPA6,C9J296 | ||
|association_with_transcript=0bp_to_ENST00000393559,ENST00000393560,ENST00000439976_5end | |association_with_transcript=0bp_to_ENST00000393559,ENST00000393560,ENST00000439976_5end | ||
|cluster_id=chr7:107643567..107643657,- | |||
|description=CAGE_peak_1_at_LAMB1_5end | |description=CAGE_peak_1_at_LAMB1_5end | ||
|id=chr7:107643567..107643657,- | |id=chr7:107643567..107643657,- | ||
|ontology_enrichment_celltype=CL:0000055!1.76e-24!180;CL:0000220!2.07e-20!246;CL:0002321!4.06e-20!248;CL:0000222!2.01e-19!119;CL:0000057!2.67e-13!75;CL:0000680!2.95e-13!57;CL:0000056!2.95e-13!57;CL:0000355!2.95e-13!57;CL:0000187!4.46e-13!54;CL:0000183!6.87e-13!59;CL:0000393!1.56e-10!60;CL:0000211!1.56e-10!60;CL:0002139!5.89e-09!24;CL:0000192!1.16e-08!42;CL:0000514!1.16e-08!42;CL:0002620!6.31e-08!23;CL:0002494!6.99e-08!16;CL:0000359!5.73e-07!32;CL:0000213!5.98e-07!57;CL:0000215!5.98e-07!57;CL:0000144!8.31e-07!625;CL:0002078!9.15e-07!44;CL:0000548!9.80e-07!679;CL:0000004!9.80e-07!679;CL:0000255!9.80e-07!679;CL:0000115!9.83e-07!35 | |ontology_enrichment_celltype=CL:0000055!1.76e-24!180;CL:0000220!2.07e-20!246;CL:0002321!4.06e-20!248;CL:0000222!2.01e-19!119;CL:0000057!2.67e-13!75;CL:0000680!2.95e-13!57;CL:0000056!2.95e-13!57;CL:0000355!2.95e-13!57;CL:0000187!4.46e-13!54;CL:0000183!6.87e-13!59;CL:0000393!1.56e-10!60;CL:0000211!1.56e-10!60;CL:0002139!5.89e-09!24;CL:0000192!1.16e-08!42;CL:0000514!1.16e-08!42;CL:0002620!6.31e-08!23;CL:0002494!6.99e-08!16;CL:0000359!5.73e-07!32;CL:0000213!5.98e-07!57;CL:0000215!5.98e-07!57;CL:0000144!8.31e-07!625;CL:0002078!9.15e-07!44;CL:0000548!9.80e-07!679;CL:0000004!9.80e-07!679;CL:0000255!9.80e-07!679;CL:0000115!9.83e-07!35 | ||
|ontology_enrichment_celltype_v019=CL:0002139;5.62e-09;24!CL:0002620;5.98e-08;23!CL:0002494;6.50e-08;16!CL:0000187;6.79e-08;55!CL:0000134;7.71e-08;55!CL:0000723;2.48e-07;61!CL:0000192;7.80e-07;43!CL:0000048;7.96e-07;58!CL:0000393;9.57e-07;61!CL:0000211;9.57e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.06e-20,250;CL:0000222,3.62e-20,121;CL:0000680,7.32e-14,58;CL:0000056,7.32e-14,58;CL:0000355,7.32e-14,58;CL:0000187,1.10e-13,55;CL:0000057,1.18e-13,76;CL:0000393,4.49e-11,61;CL:0000211,4.49e-11,61;CL:0000192,3.29e-09,43;CL:0000514,3.29e-09,43;CL:0002139,5.53e-09,24;CL:0002620,5.98e-08,23;CL:0002494,6.63e-08,16;CL:0000213,4.37e-07,58;CL:0000215,4.37e-07,58;CL:0000359,5.47e-07,32;CL:0002078,6.72e-07,45;CL:0000115,7.29e-07,36 | |||
|ontology_enrichment_development_v019=CL:0000355;1.22e-07;58!CL:0000514;7.80e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!3.10e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.94e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.95e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0003914!1.58e-18!118;UBERON:0002049!2.40e-18!79;UBERON:0007798!2.40e-18!79;UBERON:0002100!3.21e-18!216;UBERON:0000490!3.58e-18!138;UBERON:0004872!6.62e-18!84;UBERON:0005256!1.33e-17!143;UBERON:0000475!1.80e-17!365;UBERON:0000468!2.43e-17!659;UBERON:0000119!8.63e-17!312;UBERON:0000481!2.68e-16!347;UBERON:0000483!3.90e-16!309;UBERON:0003104!6.98e-16!238;UBERON:0009142!6.98e-16!238;UBERON:0000914!9.16e-16!83;UBERON:0002329!9.16e-16!83;UBERON:0003077!9.16e-16!83;UBERON:0003059!9.16e-16!83;UBERON:0007282!9.16e-16!83;UBERON:0009618!9.16e-16!83;UBERON:0007285!9.16e-16!83;UBERON:0004290!6.67e-15!70;UBERON:0001009!1.94e-14!113;UBERON:0000486!2.41e-14!82;UBERON:0004535!2.79e-14!110;UBERON:0000055!3.32e-14!69;UBERON:0001134!2.90e-13!61;UBERON:0002036!2.90e-13!61;UBERON:0003082!2.90e-13!61;UBERON:0001981!7.88e-13!60;UBERON:0007500!7.88e-13!60;UBERON:0004537!7.88e-13!60;UBERON:0006965!7.88e-13!60;UBERON:0002385!8.17e-13!63;UBERON:0001015!8.17e-13!63;UBERON:0000383!8.17e-13!63;UBERON:0000467!1.23e-12!625;UBERON:0000480!2.44e-12!626;UBERON:0000477!1.12e-10!286;UBERON:0003102!7.73e-10!95;UBERON:0004111!1.85e-09!241;UBERON:0001637!2.51e-09!42;UBERON:0003509!2.51e-09!42;UBERON:0004572!2.51e-09!42;UBERON:0000922!7.60e-09!612;UBERON:0002050!7.88e-09!605;UBERON:0005423!7.88e-09!605;UBERON:0000948!9.21e-09!24;UBERON:0005498!9.21e-09!24;UBERON:0004140!9.21e-09!24;UBERON:0009881!9.21e-09!24;UBERON:0004141!9.21e-09!24;UBERON:0003084!9.21e-09!24;UBERON:0007005!9.21e-09!24;UBERON:0004139!9.21e-09!24;UBERON:0004291!9.21e-09!24;UBERON:0007100!1.25e-08!27;UBERON:0000923!1.48e-08!604;UBERON:0005291!1.48e-08!604;UBERON:0006598!1.48e-08!604;UBERON:0002532!1.48e-08!604;UBERON:0002199!3.56e-08!45;UBERON:0002416!3.56e-08!45;UBERON:0004573!6.92e-08!33;UBERON:0004571!6.92e-08!33;UBERON:0000926!8.33e-08!448;UBERON:0004120!8.33e-08!448;UBERON:0006603!8.33e-08!448;UBERON:0001048!1.40e-07!168;UBERON:0003103!3.11e-07!69;UBERON:0002097!9.90e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;3.50e-08;22!UBERON:0002049;4.34e-08;75!UBERON:0007798;4.34e-08;75!UBERON:0007100;4.77e-08;25!UBERON:0000055;1.18e-07;65!UBERON:0004573;1.30e-07;33!UBERON:0004571;1.30e-07;33!UBERON:0001637;1.52e-07;42!UBERON:0003509;1.52e-07;42!UBERON:0004572;1.52e-07;42!UBERON:0007500;2.63e-07;56!UBERON:0001981;2.63e-07;56!UBERON:0004537;2.63e-07;56 | |||
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| ||
|short_description=p1@LAMB1 | |short_description=p1@LAMB1 | ||
}} | }} |
Latest revision as of 02:18, 25 September 2015
Short description: | p1@LAMB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LAMB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000393559, ENST00000393560, ENST00000439976_5end |
EntrezGene: | LAMB1 |
HGNC: | 6486 |
UniProt: | E9PCS6E7EPA6C9J296 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.06e-20 | 250 |
mesodermal cell | 3.62e-20 | 121 |
muscle precursor cell | 7.32e-14 | 58 |
myoblast | 7.32e-14 | 58 |
multi-potent skeletal muscle stem cell | 7.32e-14 | 58 |
muscle cell | 1.10e-13 | 55 |
fibroblast | 1.18e-13 | 76 |
electrically responsive cell | 4.49e-11 | 61 |
electrically active cell | 4.49e-11 | 61 |
smooth muscle cell | 3.29e-09 | 43 |
smooth muscle myoblast | 3.29e-09 | 43 |
endothelial cell of vascular tree | 5.53e-09 | 24 |
skin fibroblast | 5.98e-08 | 23 |
cardiocyte | 6.63e-08 | 16 |
lining cell | 4.37e-07 | 58 |
barrier cell | 4.37e-07 | 58 |
vascular associated smooth muscle cell | 5.47e-07 | 32 |
meso-epithelial cell | 6.72e-07 | 45 |
endothelial cell | 7.29e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.95e-07 | 14 |