FFCP PHASE1:Hg19::chr22:33257335..33257355,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7078 | |EntrezGene=7078 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11822 | |HGNC=11822 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-224bp_to_AF035289_5end | |association_with_transcript=-224bp_to_AF035289_5end | ||
|cluster_id=chr22:33257335..33257355,+ | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_17_at_TIMP3_5end | |description=CAGE_peak_17_at_TIMP3_5end | ||
|id=chr22:33257335..33257355,+ | |id=chr22:33257335..33257355,+ | ||
|ontology_enrichment_celltype=CL:0000055!6.79e-10!180;CL:0002334!5.75e-08!12;CL:0000057!4.07e-07!75 | |ontology_enrichment_celltype=CL:0000055!6.79e-10!180;CL:0002334!5.75e-08!12;CL:0000057!4.07e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0002541;4.96e-13;3!CL:0002595;1.66e-12;5!CL:0000349;3.39e-09;19!CL:0002593;6.53e-09;2!CL:0002537;1.43e-07;5!CL:0002334;3.41e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,5.09e-13,3;CL:0002595,2.42e-12,5;CL:0000349,2.59e-09,19;CL:0002593,6.18e-09,2;CL:0002537,1.04e-07,5;CL:0002334,3.61e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0007297;2.08e-08;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004923!2.10e-09!57;UBERON:0005631!5.19e-08!14;UBERON:0000158!5.19e-08!14 | |ontology_enrichment_uberon=UBERON:0004923!2.10e-09!57;UBERON:0005631!5.19e-08!14;UBERON:0000158!5.19e-08!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.93e-18;10!UBERON:0000158;1.93e-18;10!UBERON:0003124;4.96e-13;3!UBERON:0000920;4.96e-13;3!UBERON:0003834;1.66e-12;5!UBERON:0001533;1.66e-12;5!UBERON:0003688;4.17e-10;6!UBERON:0002358;4.17e-10;6!UBERON:0003684;4.17e-10;6!UBERON:0001178;4.17e-10;6!UBERON:0004457;4.85e-10;9!UBERON:0000042;4.85e-10;9!UBERON:0000478;4.69e-09;24!UBERON:0003513;6.10e-09;7!UBERON:0002456;6.53e-09;2!UBERON:0000305;6.77e-09;7!UBERON:0005406;4.51e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,8.45e-17,14;UBERON:0000158,8.45e-17,14;UBERON:0000920,5.09e-13,3;UBERON:0003834,2.42e-12,5;UBERON:0001533,2.42e-12,5;UBERON:0003688,6.92e-10,6;UBERON:0002358,6.92e-10,6;UBERON:0003684,6.92e-10,6;UBERON:0001178,6.92e-10,6;UBERON:0003124,2.40e-09,7;UBERON:0000478,3.30e-09,24;UBERON:0000305,4.34e-09,7;UBERON:0002456,6.18e-09,2;UBERON:0003513,7.93e-09,7;UBERON:0005406,2.71e-08,2;UBERON:0004923,3.52e-08,66;UBERON:0004871,5.95e-08,8;UBERON:0004457,2.06e-07,12;UBERON:0000042,2.06e-07,12 | |||
|phase1_expression=0.54503513781167,1.07050261945492,0.563817616383885,2.00146596706261,2.23480547213644,1.74467704820074,0,0,0,0,0,0.655324116390517,1.58260186937072,0,0,0,0,0,0.487932798790507,0.123121058076788,0,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0.50133791063589,0.579386075843295,0,3.89307896242109,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,2.48485975847659,0.506522046658319,0.264818361626438,0.860509862246441,0.354668382198357,0,0,0.74000264525148,0,0,0,0,0,0.468642863667593,0.312160076830321,0.570471821544449,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0.30648779579902,0,0.226864366320042,0.717558542755448,0,0.847727604638247,0.600182192168805,0.103052529238439,0.772921620136887,1.30281799432113,0.506328996723799,0.292311015483596,0.252433774244115,0.460249493211497,0.969876340912871,0.710019185033229,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0.464367928031979,0.721879481669586,0,0,0,0.220587945464788,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,1.3032332212413,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0,0.0895585227028483,0,0.383382679165211,0,0.088048434013226,0,0.144119953416961,0.12624243342638,0,0.381988425558278,0,0,0.205654985406647,0.901029173531752,0,0.448524337381443,0,0.07333828582095,0.387815147273333,0,0,0,0,0,0,0,0.285955987316295,0,0,0.325736184293735,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0.535286966391485,0,0.234282829985426,0.601892199455438,4.5481500811197,0,0,0.553107505625109,0.260650843404249,0.195801157462741,0.686286847621712,0,0,0,0.303127571446259,0,0.907170879989041,1.24053903909388,0.61384789315225,0.280660094433074,0.384417447767103,1.02341449813341,1.44768529029247,1.48418066444991,0.771048469013278,1.9531789784444,0.0821271560138091,0,0.813472649219715,0,0.40101294060657,0.184161977871793,0,0,0.131124414959424,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,0.512900250232778,0,0.650756789328606,0.412164046590889,0,0,0,0,0,0.096670718292122,0.154048617114644,0,0,0,0,0.0852266274161009,0,0.495854746082934,0.192190067365106,0,0,0.929691098594572,1.5740617341532,0,0.308033580176089,0,0,0.18532421910392,0,0,0,0,0.511795582622668,0.855877976067841,0,0,0,0,0,0.202182481573316,1.58510321173008,0.842516912477962,0,2.68084838594413,3.16950440270266,0.136499911407986,0.424216295861138,1.13008116620243,1.10273068709225,0.66343897524122,2.19225442626881,1.73632660280006,0.655894752046633,0.202910376962704,0,0.281695602532241,0,0.294747123039363,0.35667105148125,0,0.633322905892992,1.97576935775941,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,1.08182271390393,0,0,0,0.73254089635947,0,0,0,5.96861211844225,1.78178808499583,3.68592842519078,0,0.140669416410513,0,0,0.211125408127993,0,0,0,0.102268682502155,0,3.11039587661807,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0.241192877250816,1.52581736317083,0.110579259931225,0,0,0,0,0.461701551022782,0,0,0,0.108647371922008,18.5020672644513,3.20591576906518,27.1847735769504,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0.394584402849391,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,1.39781334593624,0,0,0,0,0.387956065953678,0,1.35588444468319,0,0,0,0,0,0.426905989478705,0.39961921916426,0.144090417154106,0,0,0,0,0.471388069233591,0,0,0.203996435272644,0.288950589901519,0,0.136905378891993,0,0,0,4.74780082162832,0.229160424011684,0,0.199679000498991,0.858452096273142,0.446342914883745,0.0671834724867263,0.360299883542404,0,0.0787831823072236,0,0.0674035438541849,0.0984274815147488,0.0846733320657845,0.795229689809303,0,0,0.137539436597234,0,0,0,0,0.335434687599266,0.236417121897595,0.157363764404994,0,0,0,1.42939065274673,0.662091970365432,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0.854299300541557,0.157204305099666,2.89967338743037,0,0,0,0,0,0,0,0,0,0,0.610131324509816,0,0,0.332787154610557,0,0,0,0.454947352624943,0.285465333544967,3.76425311517075,0,0,0.149254802886874,1.16856654923612,0,0.568209015825267,0.754703705257725,0.889811221596536,0.228840068396924,0.151230923763239,0.621748802331122,0.147855149989634,0,0,0.155262956876259,0.414706207840855,3.45594228925393,1.04349012362347,0.450772826991655,3.04644169735036,1.62748293281865,0,0,0,2.78667122089031,0.400027764663154,0.686791410365586,0,0,0,0,0.260994291965212,0,0.231522474323834,0,0,0.308801447160972,0,0.176689145945881,0.38582807654183,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0.109209638192014,0,0,0.123935764259002,0,0,0,0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| ||
|short_description=p17@TIMP3 | |short_description=p17@TIMP3 | ||
}} | }} |
Latest revision as of 22:55, 19 September 2015
Short description: | p17@TIMP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_TIMP3_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | -224bp_to_AF035289_5end |
EntrezGene: | TIMP3 |
HGNC: | 11822 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 5.09e-13 | 3 |
smooth muscle cell of the subclavian artery | 2.42e-12 | 5 |
extraembryonic cell | 2.59e-09 | 19 |
smooth muscle cell of the internal thoracic artery | 6.18e-09 | 2 |
amnion mesenchymal stem cell | 1.04e-07 | 5 |
preadipocyte | 3.61e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 8.45e-17 | 14 |
membranous layer | 8.45e-17 | 14 |
egg chorion | 5.09e-13 | 3 |
thoracic segment blood vessel | 2.42e-12 | 5 |
subclavian artery | 2.42e-12 | 5 |
omentum | 6.92e-10 | 6 |
peritoneum | 6.92e-10 | 6 |
abdominal cavity | 6.92e-10 | 6 |
visceral peritoneum | 6.92e-10 | 6 |
chorion | 2.40e-09 | 7 |
extraembryonic structure | 3.30e-09 | 24 |
amnion | 4.34e-09 | 7 |
internal thoracic artery | 6.18e-09 | 2 |
trunk blood vessel | 7.93e-09 | 7 |
perirenal fat | 2.71e-08 | 2 |
organ component layer | 3.52e-08 | 66 |
somatic layer of lateral plate mesoderm | 5.95e-08 | 8 |
cavity lining | 2.06e-07 | 12 |
serous membrane | 2.06e-07 | 12 |