FFCP PHASE1:Hg19::chr8:6264113..6264191,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79648 | |EntrezGene=79648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6954 | |HGNC=6954 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NEM0,E9PGU5,E9PH63,B4DWW2,Q6W799 | |UniProt=Q8NEM0,E9PGU5,E9PH63,B4DWW2,Q6W799 | ||
|association_with_transcript=0bp_to_ENST00000344683,ENST00000519480,ENST00000522905,NM_001172574,NM_001172575,NM_024596,uc003wqh.2,uc003wqi.2,uc011kwl.1_5end | |association_with_transcript=0bp_to_ENST00000344683,ENST00000519480,ENST00000522905,NM_001172574,NM_001172575,NM_024596,uc003wqh.2,uc003wqi.2,uc011kwl.1_5end | ||
|cluster_id=chr8:6264113..6264191,+ | |||
|description=CAGE_peak_1_at_MCPH1_5end | |description=CAGE_peak_1_at_MCPH1_5end | ||
|id=chr8:6264113..6264191,+ | |id=chr8:6264113..6264191,+ | ||
|ontology_enrichment_celltype=CL:0000542!1.18e-11!53;CL:0000051!1.18e-11!53;CL:0000838!1.52e-11!52;CL:0000037!2.67e-09!172;CL:0000566!2.67e-09!172;CL:0002032!7.90e-08!165;CL:0000837!7.90e-08!165;CL:0000988!8.72e-08!182;CL:0000791!2.66e-07!18;CL:0000789!2.66e-07!18;CL:0002420!2.66e-07!18;CL:0002419!2.66e-07!18;CL:0000790!2.66e-07!18;CL:0000236!7.44e-07!14 | |ontology_enrichment_celltype=CL:0000542!1.18e-11!53;CL:0000051!1.18e-11!53;CL:0000838!1.52e-11!52;CL:0000037!2.67e-09!172;CL:0000566!2.67e-09!172;CL:0002032!7.90e-08!165;CL:0000837!7.90e-08!165;CL:0000988!8.72e-08!182;CL:0000791!2.66e-07!18;CL:0000789!2.66e-07!18;CL:0002420!2.66e-07!18;CL:0002419!2.66e-07!18;CL:0000790!2.66e-07!18;CL:0000236!7.44e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.39e-07;18!CL:0000789;2.39e-07;18!CL:0002419;2.39e-07;18!CL:0000542;2.47e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.18e-11,53;CL:0000051,1.18e-11,53;CL:0000838,1.52e-11,52;CL:0000037,2.01e-09,168;CL:0000988,3.14e-08,177;CL:0002032,6.20e-08,161;CL:0000837,6.20e-08,161;CL:0000791,2.66e-07,18;CL:0000789,2.66e-07,18;CL:0002420,2.66e-07,18;CL:0002419,2.66e-07,18;CL:0000790,2.66e-07,18;CL:0000236,7.44e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.34e-07;82!CL:0000790;2.39e-07;18!CL:0000051;2.47e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.89e-26!115;UBERON:0000073!8.13e-15!94;UBERON:0001016!8.13e-15!94;UBERON:0001017!2.88e-14!82;UBERON:0001049!3.07e-14!57;UBERON:0005068!3.07e-14!57;UBERON:0006241!3.07e-14!57;UBERON:0007135!3.07e-14!57;UBERON:0005743!1.37e-13!86;UBERON:0003080!3.80e-13!42;UBERON:0000955!4.62e-13!69;UBERON:0006238!4.62e-13!69;UBERON:0002780!5.81e-13!41;UBERON:0001890!5.81e-13!41;UBERON:0006240!5.81e-13!41;UBERON:0002616!8.00e-12!59;UBERON:0001893!6.79e-11!34;UBERON:0002020!1.47e-10!34;UBERON:0003528!1.47e-10!34;UBERON:0002791!1.57e-10!33;UBERON:0001869!2.02e-10!32;UBERON:0002346!6.92e-10!90;UBERON:0000153!4.14e-09!129;UBERON:0007811!4.14e-09!129;UBERON:0000924!5.17e-09!173;UBERON:0006601!5.17e-09!173;UBERON:0003075!5.73e-09!86;UBERON:0007284!5.73e-09!86;UBERON:0004121!2.98e-08!169;UBERON:0000033!4.24e-08!123;UBERON:0002619!5.42e-08!22;UBERON:0000956!8.38e-08!25;UBERON:0000203!8.38e-08!25;UBERON:0001950!4.18e-07!20;UBERON:0003056!5.21e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.21e-09;41!UBERON:0001890;1.21e-09;41!UBERON:0001869;2.04e-09;32!UBERON:0001893;2.59e-09;34!UBERON:0002791;2.64e-09;32!UBERON:0003528;3.11e-09;34!UBERON:0002020;3.11e-09;34!UBERON:0000073;1.73e-08;53!UBERON:0002616;1.73e-08;53!UBERON:0007023;4.52e-08;114!UBERON:0002619;6.20e-08;22!UBERON:0000956;8.97e-08;25!UBERON:0000203;8.97e-08;25!UBERON:0001950;4.80e-07;20!UBERON:0001016;5.44e-07;83!UBERON:0001017;6.82e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.99e-25,114;UBERON:0001016,2.80e-15,89;UBERON:0001017,4.59e-14,81;UBERON:0001049,4.83e-14,56;UBERON:0005068,4.83e-14,56;UBERON:0006241,4.83e-14,56;UBERON:0007135,4.83e-14,56;UBERON:0000073,3.19e-13,53;UBERON:0002616,3.19e-13,53;UBERON:0002780,5.81e-13,41;UBERON:0001890,5.81e-13,41;UBERON:0003080,5.81e-13,41;UBERON:0006240,5.81e-13,41;UBERON:0000955,7.30e-13,68;UBERON:0006238,7.30e-13,68;UBERON:0001893,6.79e-11,34;UBERON:0003528,1.47e-10,34;UBERON:0002020,1.47e-10,34;UBERON:0001869,2.02e-10,32;UBERON:0002791,3.09e-10,32;UBERON:0002346,2.83e-09,86;UBERON:0003075,2.27e-08,82;UBERON:0007284,2.27e-08,82;UBERON:0004121,3.62e-08,171;UBERON:0000924,3.62e-08,171;UBERON:0006601,3.62e-08,171;UBERON:0002619,5.42e-08,22;UBERON:0000956,8.38e-08,25;UBERON:0000203,8.38e-08,25;UBERON:0001950,4.18e-07,20;UBERON:0003056,4.21e-07,61 | |||
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| ||
|short_description=p1@MCPH1 | |short_description=p1@MCPH1 | ||
}} | }} |
Latest revision as of 17:49, 18 September 2015
Short description: | p1@MCPH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MCPH1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000344683, ENST00000519480, ENST00000522905, NM_001172574, NM_001172575, NM_024596, uc003wqh.2, uc003wqi.2, uc011kwl.1_5end |
EntrezGene: | MCPH1 |
HGNC: | 6954 |
UniProt: | Q8NEM0E9PGU5E9PH63B4DWW2Q6W799 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.18e-11 | 53 |
common lymphoid progenitor | 1.18e-11 | 53 |
lymphoid lineage restricted progenitor cell | 1.52e-11 | 52 |
hematopoietic stem cell | 2.01e-09 | 168 |
hematopoietic cell | 3.14e-08 | 177 |
hematopoietic oligopotent progenitor cell | 6.20e-08 | 161 |
hematopoietic multipotent progenitor cell | 6.20e-08 | 161 |
mature alpha-beta T cell | 2.66e-07 | 18 |
alpha-beta T cell | 2.66e-07 | 18 |
immature T cell | 2.66e-07 | 18 |
mature T cell | 2.66e-07 | 18 |
immature alpha-beta T cell | 2.66e-07 | 18 |
B cell | 7.44e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.99e-25 | 114 |
nervous system | 2.80e-15 | 89 |
central nervous system | 4.59e-14 | 81 |
neural tube | 4.83e-14 | 56 |
neural rod | 4.83e-14 | 56 |
future spinal cord | 4.83e-14 | 56 |
neural keel | 4.83e-14 | 56 |
regional part of nervous system | 3.19e-13 | 53 |
regional part of brain | 3.19e-13 | 53 |
regional part of forebrain | 5.81e-13 | 41 |
forebrain | 5.81e-13 | 41 |
anterior neural tube | 5.81e-13 | 41 |
future forebrain | 5.81e-13 | 41 |
brain | 7.30e-13 | 68 |
future brain | 7.30e-13 | 68 |
telencephalon | 6.79e-11 | 34 |
brain grey matter | 1.47e-10 | 34 |
gray matter | 1.47e-10 | 34 |
cerebral hemisphere | 2.02e-10 | 32 |
regional part of telencephalon | 3.09e-10 | 32 |
neurectoderm | 2.83e-09 | 86 |
neural plate | 2.27e-08 | 82 |
presumptive neural plate | 2.27e-08 | 82 |
ectoderm-derived structure | 3.62e-08 | 171 |
ectoderm | 3.62e-08 | 171 |
presumptive ectoderm | 3.62e-08 | 171 |
regional part of cerebral cortex | 5.42e-08 | 22 |
cerebral cortex | 8.38e-08 | 25 |
pallium | 8.38e-08 | 25 |
neocortex | 4.18e-07 | 20 |
pre-chordal neural plate | 4.21e-07 | 61 |