FFCP PHASE1:Hg19::chr3:104139742..104139747,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:104139742..104139747,- | |||
|description=CAGE_peak_at_chr3:104139742..104139747,- | |description=CAGE_peak_at_chr3:104139742..104139747,- | ||
|id=chr3:104139742..104139747,- | |id=chr3:104139742..104139747,- | ||
|ontology_enrichment_celltype=CL:0000066!4.31e-10!254;CL:0000076!2.93e-07!62 | |ontology_enrichment_celltype=CL:0000066!4.31e-10!254;CL:0000076!2.93e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:1001319;8.18e-17;1!CL:1000600;8.18e-17;1!CL:0000082;8.89e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,8.86e-17,1;CL:1000600,8.86e-17,1;CL:0000082,9.21e-08,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.92e-22!106;DOID:1749!4.81e-22!14;DOID:0050687!3.28e-18!143;DOID:14566!5.22e-15!239;DOID:299!5.57e-14!25;DOID:162!1.37e-13!235;DOID:3493!3.20e-08!2;DOID:4468!1.28e-07!2 | |ontology_enrichment_disease=DOID:305!2.92e-22!106;DOID:1749!4.81e-22!14;DOID:0050687!3.28e-18!143;DOID:14566!5.22e-15!239;DOID:299!5.57e-14!25;DOID:162!1.37e-13!235;DOID:3493!3.20e-08!2;DOID:4468!1.28e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:6193;8.18e-17;1!DOID:1324;1.05e-09;15!DOID:3493;3.71e-09;2!DOID:0050615;3.92e-09;16!DOID:3350;4.52e-09;2!DOID:4468;6.67e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,7.57e-17,1;DOID:305,1.60e-13,106;DOID:0050687,5.99e-12,143;DOID:162,7.82e-10,235;DOID:1324,1.10e-09,15;DOID:14566,1.33e-09,239;DOID:3493,4.02e-09,2;DOID:0050615,4.09e-09,16;DOID:3350,4.34e-09,2;DOID:4468,5.94e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0003343!2.98e-13!4;UBERON:0004785!2.98e-13!4;UBERON:0003729!1.30e-10!5;UBERON:0000344!2.68e-09!12;UBERON:0002360!4.97e-07!2;UBERON:0000094!4.97e-07!2;UBERON:0007645!4.97e-07!2 | |ontology_enrichment_uberon=UBERON:0003343!2.98e-13!4;UBERON:0004785!2.98e-13!4;UBERON:0003729!1.30e-10!5;UBERON:0000344!2.68e-09!12;UBERON:0002360!4.97e-07!2;UBERON:0000094!4.97e-07!2;UBERON:0007645!4.97e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0004645;8.18e-17;1!UBERON:0001256;8.18e-17;1!UBERON:0001259;8.18e-17;1!UBERON:0000997;1.78e-16;1!UBERON:0005056;1.78e-16;1!UBERON:0004176;1.78e-16;1!UBERON:0001255;4.52e-09;2!UBERON:0001556;4.52e-09;2!UBERON:0004802;8.89e-08;19!UBERON:0000115;8.89e-08;19!UBERON:0002048;8.69e-07;22!UBERON:0004807;8.69e-07;22!UBERON:0000117;8.69e-07;22!UBERON:0000171;8.69e-07;22!UBERON:0000170;8.69e-07;22!UBERON:0005911;8.97e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,8.86e-17,1;UBERON:0001256,8.86e-17,1;UBERON:0001259,8.86e-17,1;UBERON:0000997,2.63e-16,1;UBERON:0005056,2.63e-16,1;UBERON:0001255,4.70e-09,2;UBERON:0001556,4.70e-09,2;UBERON:0004802,9.21e-08,19;UBERON:0000115,9.21e-08,19;UBERON:0005153,7.00e-07,37;UBERON:0002048,8.96e-07,22;UBERON:0000117,8.96e-07,22;UBERON:0000171,8.96e-07,22;UBERON:0000170,8.96e-07,22;UBERON:0005597,8.96e-07,22;UBERON:0000118,8.96e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0.164201178899891,0.393553906568396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0.962479855263359,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.36408156524854,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,1.47698645169619,0.163232808159148,0,0,0,0,0,0.296521128680622,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0.138674673013139,0,1.07791637155815,0,0,2.92376255201748,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,0,0,0,0,0.14405479798815,0.49701014226173,0,1.08723364858891,1.46443984837266,0,0,0,0.136905378891993,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16160370171347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02652102730598,0,0,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0.74988244777264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0.489473409012935,0,0,0,0,1.73622634443823,0.168942440653073,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,0.825788063434183,0.366857197043358,0.115525666150338,0,0,0,0,0,0,0,0.818859587550484,0,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0.606965604236632,0,0,0,0,0,0,0,3.89309906622242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354996002191696,0.255640214277473,0,0,0.93061915699296,3.82215575590973,0,0.98150233615243,3.41370189950354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71421575442263,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36069478971826,0.106727345877715,0,0.359300808426348,0,0,0,0,0,0.641136984606466 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0.164201178899891,0.393553906568396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0.962479855263359,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.36408156524854,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,1.47698645169619,0.163232808159148,0,0,0,0,0,0.296521128680622,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0.138674673013139,0,1.07791637155815,0,0,2.92376255201748,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,0,0,0,0,0.14405479798815,0.49701014226173,0,1.08723364858891,1.46443984837266,0,0,0,0.136905378891993,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16160370171347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02652102730598,0,0,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0.74988244777264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0.489473409012935,0,0,0,0,1.73622634443823,0.168942440653073,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,0.825788063434183,0.366857197043358,0.115525666150338,0,0,0,0,0,0,0,0.818859587550484,0,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0.606965604236632,0,0,0,0,0,0,0,3.89309906622242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354996002191696,0.255640214277473,0,0,0.93061915699296,3.82215575590973,0,0.98150233615243,3.41370189950354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71421575442263,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36069478971826,0.106727345877715,0,0.359300808426348,0,0,0,0,0,0.641136984606466 | ||
|short_description=p@chr3:104139742..104139747,- | |short_description=p@chr3:104139742..104139747,- | ||
}} | }} |
Latest revision as of 13:54, 29 July 2015
Short description: | p@chr3:104139742..104139747, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:104139742..104139747, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 8.86e-17 | 1 |
lower urinary tract cell | 8.86e-17 | 1 |
epithelial cell of lung | 9.21e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 8.86e-17 | 1 |
wall of urinary bladder | 8.86e-17 | 1 |
mucosa of urinary bladder | 8.86e-17 | 1 |
mammalian vulva | 2.63e-16 | 1 |
external female genitalia | 2.63e-16 | 1 |
urinary bladder | 4.70e-09 | 2 |
lower urinary tract | 4.70e-09 | 2 |
respiratory tract epithelium | 9.21e-08 | 19 |
lung epithelium | 9.21e-08 | 19 |
epithelial bud | 7.00e-07 | 37 |
lung | 8.96e-07 | 22 |
respiratory tube | 8.96e-07 | 22 |
respiration organ | 8.96e-07 | 22 |
pair of lungs | 8.96e-07 | 22 |
lung primordium | 8.96e-07 | 22 |
lung bud | 8.96e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 7.57e-17 | 1 |
carcinoma | 1.60e-13 | 106 |
cell type cancer | 5.99e-12 | 143 |
cancer | 7.82e-10 | 235 |
lung cancer | 1.10e-09 | 15 |
disease of cellular proliferation | 1.33e-09 | 239 |
signet ring cell adenocarcinoma | 4.02e-09 | 2 |
respiratory system cancer | 4.09e-09 | 16 |
mesenchymal cell neoplasm | 4.34e-09 | 2 |
clear cell adenocarcinoma | 5.94e-09 | 2 |