FFCP PHASE1:Hg19::chr3:124829396..124829423,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84561 | |EntrezGene=84561 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15595 | |HGNC=15595 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=138bp_to_ENST00000479231_5end | |association_with_transcript=138bp_to_ENST00000479231_5end | ||
|cluster_id=chr3:124829396..124829423,- | |||
|coexpression_cluster_id=C4277 | |||
|description=CAGE_peak_3_at_SLC12A8_5end | |description=CAGE_peak_3_at_SLC12A8_5end | ||
|id=chr3:124829396..124829423,- | |id=chr3:124829396..124829423,- | ||
|ontology_enrichment_celltype=CL:0000055!1.98e-24!180;CL:0000144!1.97e-18!625;CL:0000057!1.73e-17!75;CL:0002371!1.55e-14!591;CL:0000548!4.08e-14!679;CL:0000004!4.08e-14!679;CL:0000255!4.08e-14!679;CL:0000012!9.85e-14!682;CL:0000048!2.94e-11!430;CL:0000723!1.65e-10!436;CL:0000034!7.36e-10!444;CL:0000003!5.04e-09!722;CL:0002320!9.02e-08!365;CL:0000219!1.42e-07!390;CL:0000680!4.61e-07!57;CL:0000056!4.61e-07!57;CL:0000355!4.61e-07!57;CL:0000187!7.37e-07!54;CL:0000183!9.08e-07!59 | |ontology_enrichment_celltype=CL:0000055!1.98e-24!180;CL:0000144!1.97e-18!625;CL:0000057!1.73e-17!75;CL:0002371!1.55e-14!591;CL:0000548!4.08e-14!679;CL:0000004!4.08e-14!679;CL:0000255!4.08e-14!679;CL:0000012!9.85e-14!682;CL:0000048!2.94e-11!430;CL:0000723!1.65e-10!436;CL:0000034!7.36e-10!444;CL:0000003!5.04e-09!722;CL:0002320!9.02e-08!365;CL:0000219!1.42e-07!390;CL:0000680!4.61e-07!57;CL:0000056!4.61e-07!57;CL:0000355!4.61e-07!57;CL:0000187!7.37e-07!54;CL:0000183!9.08e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000077;5.47e-11;19!CL:0000134;2.24e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,5.23e-11,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!5.02e-07!14 | |ontology_enrichment_disease=DOID:2394!5.02e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.16e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.17e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0002384!3.34e-08!375;UBERON:0001801!8.23e-08!14;UBERON:0002200!2.77e-07!11;UBERON:0006876!2.77e-07!11;UBERON:0000914!4.61e-07!83;UBERON:0002329!4.61e-07!83;UBERON:0003077!4.61e-07!83;UBERON:0003059!4.61e-07!83;UBERON:0007282!4.61e-07!83;UBERON:0009618!4.61e-07!83;UBERON:0007285!4.61e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0002203;5.85e-10;6!UBERON:0001768;5.85e-10;6!UBERON:0002200;5.85e-10;6!UBERON:0006876;4.38e-09;11!UBERON:0001801;1.24e-08;14!UBERON:0000488;1.48e-07;4!UBERON:0001456;1.64e-07;21!UBERON:0000019;3.85e-07;19!UBERON:0000047;3.85e-07;19!UBERON:0004088;3.85e-07;19!UBERON:0010230;3.85e-07;19!UBERON:0007625;5.10e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002203,5.45e-10,6;UBERON:0001768,5.45e-10,6;UBERON:0002200,5.45e-10,6;UBERON:0006876,4.64e-09,11;UBERON:0001801,1.11e-08,14;UBERON:0003104,1.56e-07,160;UBERON:0009142,1.56e-07,160;UBERON:0000488,2.00e-07,4;UBERON:0001456,4.23e-07,22;UBERON:0007625,4.75e-07,11;UBERON:0001048,5.73e-07,160;UBERON:0000019,9.34e-07,20;UBERON:0000047,9.34e-07,20;UBERON:0010312,9.34e-07,20;UBERON:0004088,9.34e-07,20;UBERON:0010230,9.34e-07,20;UBERON:0003072,9.34e-07,20;UBERON:0004128,9.34e-07,20;UBERON:0003071,9.34e-07,20 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.845726424575827,0,0.893922188854576,0.872338524100369,0,0,0,0.491467873003018,0,0.218441372130172,1.05506791291381,2.47532705920093,2.31978163009541,0,0,0,0.487932798790507,5.66356867153224,3.06001036866379,5.01527554364941,0.85870796139317,0.410623275218653,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0,0,0,0,0.28769239232215,0.256160706529101,0,0,0,0,0,0.272906150057846,0.224723484445085,0,0,0,0.329851300186716,0.797854630486527,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,7.37770945674,2.17366355134002,0.361439152384566,0.50133791063589,0,0,0,1.03988298880475,3.32594096193846,5.09441757020131,0,0,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.933382937297,1.77282716330412,4.237093786023,10.3261183469573,0.709336764396714,3.36406560085384,0,2.71334303258876,0,0.134710672069688,0.163461903113459,0.151357427644931,0,0.937285727335186,0,0,0,0,0,0,0.204154171254893,0.368502951935304,0.929932030581889,1.18800285728205,0.494533858557114,0.910161361938026,14.3723628363248,0.336672227908132,0.750711119231785,0.277064115484183,2.19488810440419,0.30648779579902,0.901428353439581,0.113432183160021,0.179389635688862,0.213557388818567,0,0.600182192168805,0.515262646192195,0,0.744467425326359,0.168776332241266,0.0974370051611986,0.252433774244115,0.0920498986422993,2.90962902273861,0.355009592516614,0.201504196455281,0.169560592310488,0,0,0,0,0,0,0.207322110030741,0,0,1.56449532329816,1.28648187638577,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,7.4083322039652,5.88034845542168,0,0,0,0,0,8.23525489432923,0,0,0,0,0.651616610620649,3.11980435583874,2.88662684050547,0.695582429850461,14.3238606967702,0,0,0,0,0,0.492434012174795,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0.112131084345361,1.30788020649984,0.07333828582095,6.72212921940444,0,0,0.797814349754612,0,1.02882949704857,0,0.266422179016099,6.0050757336422,9.22456729165453,15.6415663988346,0.325736184293735,8.17401482107855,3.16780749173372,4.22015127883421,5.22920075160176,1.29964888536674,0,0,0,0.239624855491583,0,0,0.144781306667579,0.410952645100767,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,1.59498939234882,4.00136416847742,0,3.11956292296211,3.92543775353756,2.36553622550902,3.04567678981054,0.300946099727719,2.27407504055985,2.0694614258501,0,0.553107505625109,0.434418072340414,0.783204629850962,0,0,0,0,0,0,0,0.496215615637554,0.306923946576125,0.841980283299221,2.17836553734692,2.55853624533352,2.73451665944133,2.96836132889982,0,0.177561725313127,0,0.519254429183621,0.116210378459959,0,0,0,18.2554972581725,1.27463817604702,1.96686622439136,0,0,1.56869953835371,1.46139224653261,0.105551628892876,0,0,0,0,1.35473218771926,0,0,0,0.447749509444357,0,0,0,1.96808787419823,0,0,0.27470839445503,0.082509499920588,0,0,6.42735719376638,0.386682873168488,0,0.307007349452259,0,2.36324538710202,0.435050081742686,0.426133137080504,0.178064071293475,0,0,0,0,0,0.94443704049192,0,0,0,0,0,0,0.744316738719335,2.21465597303108,28.5945290885737,1.79128453917934,2.1396949401696,0.95460974377781,0,1.43897966066652,4.94166653524899,3.53437207037059,0,0,0,2.92580243453754,0.731140468893853,0,0.409499734223957,18.0998952900752,3.39024349860728,0.551365343546124,0,0,1.15755106853338,0.655894752046633,0.202910376962704,0,0,8.03103572342688,7.76167424003657,0,0.354761064070598,0.211107635297664,1.31717957183961,1.89736586882858,2.79947776195986,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,1.11308705022906,3.62568523298871,0,0,0.552567831062295,0,2.86352311006033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,0,0,6.95046540666707,0,0,0,0,0.0915975934018623,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0.330991955875499,0,0,2.56148591426813,0,0,0.293977192243133,0.261177619741208,0,0,0,0.0730893170861856,0,0,0,0,0.685209623233754,0,0,0,4.64921157458896,0,3.9961921916426,0,0,0,0,2.36079817574322,0,0.271808412147228,0.418411385249333,11.6277968105407,1.44475294950759,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0.714695326373367,0,0,0,0,0,0,0,2.72620834856675,0.906496732161005,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0.447764408660622,0.233713309847224,1.10961172300523,0.378806010550178,1.0062716070103,0,0.915360273587694,1.05861646634267,6.372925223894,0.147855149989634,2.70804504178294,0,2.32894435314389,2.48823724704513,3.72178400381193,2.60872530905867,5.10875870590543,7.9969094555447,5.69619026486526,0,3.43713782535963,0.928067519756987,1.99047944349308,0.400027764663154,0,0.336749488765919,0,0,0,0,11.7887081266382,8.79785402430569,0,1.96997725189636,12.6608593335999,32.4540393376487,0,1.54331230616732,1.35153952522458,0.256241518587947,0,2.12701969324168,0,0,0,0,0.327609848846413,4.17813944881323,0,0,0,0,3.40509572140102,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,1.05802783107205,17.7622376864856,0.385375350578757,0,0,0,0,0,0,0,0.392590874004102,0,0,0,0.762764190934334,0,0,0.150420656698515,0.80682027481408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,2.57232014156128,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,4.00855682365126,0.207216164163037,0.3414369541879,0,0,0,0,0,0.68732060563215,0.31020638566432,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,1.29787968637137,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0,0,0,0,14.6892739980604,0,0,0,0,0.26940821205835,0,0,0,0,0,0,2.34640942403454,0,0,0,0,9.29648627679376 | |phase1_expression=0.363356758541113,0.428201047781966,0.845726424575827,0,0.893922188854576,0.872338524100369,0,0,0,0.491467873003018,0,0.218441372130172,1.05506791291381,2.47532705920093,2.31978163009541,0,0,0,0.487932798790507,5.66356867153224,3.06001036866379,5.01527554364941,0.85870796139317,0.410623275218653,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0,0,0,0,0.28769239232215,0.256160706529101,0,0,0,0,0,0.272906150057846,0.224723484445085,0,0,0,0.329851300186716,0.797854630486527,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,7.37770945674,2.17366355134002,0.361439152384566,0.50133791063589,0,0,0,1.03988298880475,3.32594096193846,5.09441757020131,0,0,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.933382937297,1.77282716330412,4.237093786023,10.3261183469573,0.709336764396714,3.36406560085384,0,2.71334303258876,0,0.134710672069688,0.163461903113459,0.151357427644931,0,0.937285727335186,0,0,0,0,0,0,0.204154171254893,0.368502951935304,0.929932030581889,1.18800285728205,0.494533858557114,0.910161361938026,14.3723628363248,0.336672227908132,0.750711119231785,0.277064115484183,2.19488810440419,0.30648779579902,0.901428353439581,0.113432183160021,0.179389635688862,0.213557388818567,0,0.600182192168805,0.515262646192195,0,0.744467425326359,0.168776332241266,0.0974370051611986,0.252433774244115,0.0920498986422993,2.90962902273861,0.355009592516614,0.201504196455281,0.169560592310488,0,0,0,0,0,0,0.207322110030741,0,0,1.56449532329816,1.28648187638577,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,7.4083322039652,5.88034845542168,0,0,0,0,0,8.23525489432923,0,0,0,0,0.651616610620649,3.11980435583874,2.88662684050547,0.695582429850461,14.3238606967702,0,0,0,0,0,0.492434012174795,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0.112131084345361,1.30788020649984,0.07333828582095,6.72212921940444,0,0,0.797814349754612,0,1.02882949704857,0,0.266422179016099,6.0050757336422,9.22456729165453,15.6415663988346,0.325736184293735,8.17401482107855,3.16780749173372,4.22015127883421,5.22920075160176,1.29964888536674,0,0,0,0.239624855491583,0,0,0.144781306667579,0.410952645100767,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,1.59498939234882,4.00136416847742,0,3.11956292296211,3.92543775353756,2.36553622550902,3.04567678981054,0.300946099727719,2.27407504055985,2.0694614258501,0,0.553107505625109,0.434418072340414,0.783204629850962,0,0,0,0,0,0,0,0.496215615637554,0.306923946576125,0.841980283299221,2.17836553734692,2.55853624533352,2.73451665944133,2.96836132889982,0,0.177561725313127,0,0.519254429183621,0.116210378459959,0,0,0,18.2554972581725,1.27463817604702,1.96686622439136,0,0,1.56869953835371,1.46139224653261,0.105551628892876,0,0,0,0,1.35473218771926,0,0,0,0.447749509444357,0,0,0,1.96808787419823,0,0,0.27470839445503,0.082509499920588,0,0,6.42735719376638,0.386682873168488,0,0.307007349452259,0,2.36324538710202,0.435050081742686,0.426133137080504,0.178064071293475,0,0,0,0,0,0.94443704049192,0,0,0,0,0,0,0.744316738719335,2.21465597303108,28.5945290885737,1.79128453917934,2.1396949401696,0.95460974377781,0,1.43897966066652,4.94166653524899,3.53437207037059,0,0,0,2.92580243453754,0.731140468893853,0,0.409499734223957,18.0998952900752,3.39024349860728,0.551365343546124,0,0,1.15755106853338,0.655894752046633,0.202910376962704,0,0,8.03103572342688,7.76167424003657,0,0.354761064070598,0.211107635297664,1.31717957183961,1.89736586882858,2.79947776195986,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,1.11308705022906,3.62568523298871,0,0,0.552567831062295,0,2.86352311006033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,0,0,6.95046540666707,0,0,0,0,0.0915975934018623,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0.330991955875499,0,0,2.56148591426813,0,0,0.293977192243133,0.261177619741208,0,0,0,0.0730893170861856,0,0,0,0,0.685209623233754,0,0,0,4.64921157458896,0,3.9961921916426,0,0,0,0,2.36079817574322,0,0.271808412147228,0.418411385249333,11.6277968105407,1.44475294950759,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0.714695326373367,0,0,0,0,0,0,0,2.72620834856675,0.906496732161005,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0.447764408660622,0.233713309847224,1.10961172300523,0.378806010550178,1.0062716070103,0,0.915360273587694,1.05861646634267,6.372925223894,0.147855149989634,2.70804504178294,0,2.32894435314389,2.48823724704513,3.72178400381193,2.60872530905867,5.10875870590543,7.9969094555447,5.69619026486526,0,3.43713782535963,0.928067519756987,1.99047944349308,0.400027764663154,0,0.336749488765919,0,0,0,0,11.7887081266382,8.79785402430569,0,1.96997725189636,12.6608593335999,32.4540393376487,0,1.54331230616732,1.35153952522458,0.256241518587947,0,2.12701969324168,0,0,0,0,0.327609848846413,4.17813944881323,0,0,0,0,3.40509572140102,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,1.05802783107205,17.7622376864856,0.385375350578757,0,0,0,0,0,0,0,0.392590874004102,0,0,0,0.762764190934334,0,0,0.150420656698515,0.80682027481408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,2.57232014156128,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,4.00855682365126,0.207216164163037,0.3414369541879,0,0,0,0,0,0.68732060563215,0.31020638566432,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,1.29787968637137,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0,0,0,0,14.6892739980604,0,0,0,0,0.26940821205835,0,0,0,0,0,0,2.34640942403454,0,0,0,0,9.29648627679376 | ||
|short_description=p3@SLC12A8 | |short_description=p3@SLC12A8 | ||
}} | }} |
Latest revision as of 03:15, 20 September 2015
Short description: | p3@SLC12A8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC12A8_5end |
Coexpression cluster: | C4277_mesothelioma_Smooth_normal_Prostate_Ewing_thyroid_glioblastoma |
Association with transcript: | 138bp_to_ENST00000479231_5end |
EntrezGene: | SLC12A8 |
HGNC: | 15595 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 5.23e-11 | 19 |
Ontology term | p-value | n |
---|---|---|
vasculature of eye | 5.45e-10 | 6 |
uvea | 5.45e-10 | 6 |
vasculature of head | 5.45e-10 | 6 |
vasculature of organ | 4.64e-09 | 11 |
anterior segment of eyeball | 1.11e-08 | 14 |
mesenchyme | 1.56e-07 | 160 |
entire embryonic mesenchyme | 1.56e-07 | 160 |
atypical epithelium | 2.00e-07 | 4 |
face | 4.23e-07 | 22 |
pigment epithelium of eye | 4.75e-07 | 11 |
primordium | 5.73e-07 | 160 |
camera-type eye | 9.34e-07 | 20 |
simple eye | 9.34e-07 | 20 |
immature eye | 9.34e-07 | 20 |
ocular region | 9.34e-07 | 20 |
eyeball of camera-type eye | 9.34e-07 | 20 |
optic cup | 9.34e-07 | 20 |
optic vesicle | 9.34e-07 | 20 |
eye primordium | 9.34e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.17e-11 | 14 |