FFCP PHASE1:Hg19::chr3:4722301..4722324,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:4722301..4722324,+ | |||
|coexpression_cluster_id=C108 | |||
|description=CAGE_peak_at_chr3:4722301..4722324,+ | |description=CAGE_peak_at_chr3:4722301..4722324,+ | ||
|id=chr3:4722301..4722324,+ | |id=chr3:4722301..4722324,+ | ||
|ontology_enrichment_celltype=CL:0002195!4.39e-08!2;CL:0002571!4.39e-08!2 | |ontology_enrichment_celltype=CL:0002195!4.39e-08!2;CL:0002571!4.39e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0002367;1.29e-13;2!CL:0002327;1.31e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002367,1.37e-13,2;CL:0002327,1.31e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0008425;2.16e-26;1!UBERON:0005754;4.06e-26;1!UBERON:0007297;8.82e-14;2!UBERON:0009847;1.10e-09;3!UBERON:0003353;1.10e-09;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5093;1.31e-07;4!DOID:1612;1.31e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.31e-07,4;DOID:1612,1.31e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.49e-18!115;UBERON:0000481!1.36e-09!347;UBERON:0000200!5.08e-09!6;UBERON:0001950!7.83e-09!20;UBERON:0002619!5.97e-08!22;UBERON:0001870!7.36e-08!2;UBERON:0003075!9.19e-08!86;UBERON:0007284!9.19e-08!86;UBERON:0002020!2.06e-07!34;UBERON:0003528!2.06e-07!34;UBERON:0002346!2.99e-07!90;UBERON:0003056!3.84e-07!61;UBERON:0000956!6.95e-07!25;UBERON:0000203!6.95e-07!25;UBERON:0001872!9.46e-07!5 | |ontology_enrichment_uberon=UBERON:0007023!2.49e-18!115;UBERON:0000481!1.36e-09!347;UBERON:0000200!5.08e-09!6;UBERON:0001950!7.83e-09!20;UBERON:0002619!5.97e-08!22;UBERON:0001870!7.36e-08!2;UBERON:0003075!9.19e-08!86;UBERON:0007284!9.19e-08!86;UBERON:0002020!2.06e-07!34;UBERON:0003528!2.06e-07!34;UBERON:0002346!2.99e-07!90;UBERON:0003056!3.84e-07!61;UBERON:0000956!6.95e-07!25;UBERON:0000203!6.95e-07!25;UBERON:0001872!9.46e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0006947;9.10e-34;3!UBERON:0004054;9.10e-34;3!UBERON:0000998;4.06e-26;1!UBERON:0000996;4.06e-26;1!UBERON:0006868;4.06e-26;1!UBERON:0001000;8.64e-26;1!UBERON:0005352;8.64e-26;1!UBERON:0005904;1.26e-25;4!UBERON:0005969;1.29e-13;2!UBERON:0003956;1.29e-13;2!UBERON:0004175;2.56e-11;21!UBERON:0000058;6.94e-11;10!UBERON:0003101;7.41e-11;22!UBERON:0000079;7.41e-11;22!UBERON:0003135;5.54e-10;11!UBERON:0003937;2.60e-09;12!UBERON:0005399;2.60e-09;12!UBERON:0001911;1.31e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,9.10e-34,3;UBERON:0004054,9.10e-34,3;UBERON:0000996,3.58e-26,1;UBERON:0000998,4.61e-26,1;UBERON:0006868,4.61e-26,1;UBERON:0001000,7.62e-26,1;UBERON:0005352,7.62e-26,1;UBERON:0005904,1.26e-25,4;UBERON:0005969,1.37e-13,2;UBERON:0003956,1.37e-13,2;UBERON:0003101,7.41e-11,22;UBERON:0000079,7.41e-11,22;UBERON:0003135,5.54e-10,11;UBERON:0004175,1.28e-09,25;UBERON:0003937,2.66e-09,12;UBERON:0005399,2.66e-09,12;UBERON:0003064,1.05e-08,28;UBERON:0000162,4.04e-08,14;UBERON:0001353,4.04e-08,14;UBERON:0000163,4.04e-08,14;UBERON:0006866,4.04e-08,14;UBERON:0000164,4.04e-08,14;UBERON:0000931,4.04e-08,14;UBERON:0004122,1.22e-07,15;UBERON:0001911,1.31e-07,4;UBERON:0005333,1.31e-07,4;UBERON:0008425,1.31e-07,4;UBERON:0005311,1.31e-07,4;UBERON:0005156,3.62e-07,59;UBERON:0000990,3.62e-07,59 | |||
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| ||
|short_description=p@chr3:4722301..4722324,+ | |short_description=p@chr3:4722301..4722324,+ | ||
}} | }} |
Latest revision as of 21:32, 29 July 2015
Short description: | p@chr3:4722301..4722324, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:4722301..4722324, + |
Coexpression cluster: | C108_breast_hepatoblastoma_MCF7_parotid_salivary_submaxillary_prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
trabecular meshwork cell | 1.37e-13 | 2 |
mammary gland epithelial cell | 1.31e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 9.10e-34 | 3 |
internal male genitalia | 9.10e-34 | 3 |
vagina | 3.58e-26 | 1 |
seminal vesicle | 4.61e-26 | 1 |
seminal fluid secreting gland | 4.61e-26 | 1 |
vas deferens | 7.62e-26 | 1 |
spermatic cord | 7.62e-26 | 1 |
duct of male reproductive system | 1.26e-25 | 4 |
reticulum trabeculare | 1.37e-13 | 2 |
aqueous drainage system | 1.37e-13 | 2 |
male organism | 7.41e-11 | 22 |
male reproductive system | 7.41e-11 | 22 |
male reproductive organ | 5.54e-10 | 11 |
internal genitalia | 1.28e-09 | 25 |
sex gland | 2.66e-09 | 12 |
male reproductive gland | 2.66e-09 | 12 |
intermediate mesoderm | 1.05e-08 | 28 |
cloaca | 4.04e-08 | 14 |
anal region | 4.04e-08 | 14 |
embryonic cloaca | 4.04e-08 | 14 |
terminal part of digestive tract | 4.04e-08 | 14 |
primitive urogenital sinus | 4.04e-08 | 14 |
proctodeum | 4.04e-08 | 14 |
genitourinary system | 1.22e-07 | 15 |
mammary gland | 1.31e-07 | 4 |
mammary bud | 1.31e-07 | 4 |
mammary ridge | 1.31e-07 | 4 |
mammary placode | 1.31e-07 | 4 |
reproductive structure | 3.62e-07 | 59 |
reproductive system | 3.62e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.31e-07 | 4 |
breast cancer | 1.31e-07 | 4 |