FFCP PHASE1:Hg19::chr15:33023069..33023091,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr15:33023069..33023091,+
|short_description=p5@GREM1
|description=CAGE_peak_5_at_GREM1_5end
|association_with_transcript=177bp_to_AF045800,BC069525,CU686886,H...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26585 | |EntrezGene=26585 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2001 | |HGNC=2001 | ||
|TSSclassifier=strong | |||
|UniProt=O60565 | |UniProt=O60565 | ||
|association_with_transcript=177bp_to_AF045800,BC069525,CU686886,HQ448400_5end | |||
|cluster_id=chr15:33023069..33023091,+ | |||
|coexpression_cluster_id=C316 | |||
|description=CAGE_peak_5_at_GREM1_5end | |||
|id=chr15:33023069..33023091,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.73e-30!180;CL:0000057!1.65e-26!75;CL:0002620!1.88e-16!23;CL:0000048!2.04e-13!430;CL:0000723!1.08e-12!436;CL:0000034!3.98e-12!444;CL:0002334!1.21e-11!12;CL:0000680!1.39e-09!57;CL:0000056!1.39e-09!57;CL:0000355!1.39e-09!57;CL:0002320!1.92e-08!365;CL:0002371!2.01e-08!591;CL:0000192!5.20e-08!42;CL:0000514!5.20e-08!42;CL:0002539!5.55e-08!10;CL:0000187!6.39e-08!54;CL:0000134!2.90e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0002620;7.28e-22;23!CL:0002334;3.51e-11;12!CL:0002559;8.56e-10;5!CL:0000057;1.94e-08;73!CL:0002320;2.77e-07;188!CL:0000135;4.68e-07;3!CL:0000388;4.68e-07;3!CL:0000056;9.32e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.45e-26,76;CL:0002620,5.35e-22,23;CL:0000048,1.05e-16,427;CL:0000723,3.98e-16,433;CL:0000034,2.21e-15,441;CL:0002320,3.21e-11,361;CL:0002334,4.14e-11,12;CL:0000134,1.16e-10,354;CL:0002559,1.11e-09,5;CL:0000219,1.39e-08,386;CL:0000135,4.52e-07,3;CL:0000388,4.52e-07,3;CL:0000680,6.18e-07,58;CL:0000056,6.18e-07,58;CL:0000355,6.18e-07,58;CL:0000515,6.30e-07,4;CL:0000136,9.33e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000515;9.32e-07;4 | |||
|ontology_enrichment_disease=DOID:2394!2.90e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:17;4.91e-09;5!DOID:450;4.91e-09;5!DOID:66;4.91e-09;5!DOID:423;4.91e-09;5!DOID:0080000;4.91e-09;5!DOID:11722;4.91e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.54e-09,5;DOID:450,3.54e-09,5;DOID:66,3.54e-09,5;DOID:423,3.54e-09,5;DOID:0080000,3.54e-09,5;DOID:11722,3.54e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.75e-16!83;UBERON:0002329!5.75e-16!83;UBERON:0003077!5.75e-16!83;UBERON:0003059!5.75e-16!83;UBERON:0007282!5.75e-16!83;UBERON:0009618!5.75e-16!83;UBERON:0007285!5.75e-16!83;UBERON:0002199!2.34e-13!45;UBERON:0002416!2.34e-13!45;UBERON:0004290!4.70e-13!70;UBERON:0002097!4.32e-12!40;UBERON:0000486!1.31e-11!82;UBERON:0003102!5.32e-10!95;UBERON:0002384!5.13e-09!375;UBERON:0001134!6.18e-09!61;UBERON:0002036!6.18e-09!61;UBERON:0003082!6.18e-09!61;UBERON:0000475!9.44e-09!365;UBERON:0001135!2.01e-08!15;UBERON:0002385!2.34e-08!63;UBERON:0001015!2.34e-08!63;UBERON:0000383!2.34e-08!63;UBERON:0005256!2.45e-08!143;UBERON:0004237!5.55e-08!10;UBERON:0004695!5.55e-08!10;UBERON:0002111!5.55e-08!10;UBERON:0004178!5.55e-08!10;UBERON:0002067!6.98e-07!9;UBERON:0004016!6.98e-07!9;UBERON:0010083!6.98e-07!9;UBERON:0003688!9.99e-07!6;UBERON:0002358!9.99e-07!6;UBERON:0003684!9.99e-07!6;UBERON:0001178!9.99e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;2.10e-15;41!UBERON:0002199;4.97e-14;46!UBERON:0002416;4.97e-14;46!UBERON:0003102;1.47e-11;50!UBERON:0002073;8.56e-10;5!UBERON:0004457;4.59e-09;9!UBERON:0000042;4.59e-09;9!UBERON:0002067;1.97e-08;9!UBERON:0002384;3.67e-08;198!UBERON:0003688;1.67e-07;6!UBERON:0002358;1.67e-07;6!UBERON:0003684;1.67e-07;6!UBERON:0001178;1.67e-07;6!UBERON:0007846;4.68e-07;3!UBERON:0000043;4.68e-07;3!UBERON:0007845;4.68e-07;3!UBERON:0001135;7.45e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,2.52e-22,46;UBERON:0002416,2.52e-22,46;UBERON:0002097,7.56e-20,41;UBERON:0003102,3.96e-14,99;UBERON:0002384,4.37e-12,371;UBERON:0007524,6.29e-11,73;UBERON:0002329,2.16e-10,71;UBERON:0003059,2.16e-10,71;UBERON:0007282,2.16e-10,71;UBERON:0004290,2.16e-10,71;UBERON:0009618,2.16e-10,71;UBERON:0003077,3.78e-10,72;UBERON:0007285,3.78e-10,72;UBERON:0002073,1.11e-09,5;UBERON:0005086,1.11e-09,5;UBERON:0000486,1.31e-09,83;UBERON:0007503,7.75e-09,78;UBERON:0002067,2.35e-08,9;UBERON:0004016,2.35e-08,9;UBERON:0010083,2.35e-08,9;UBERON:0003688,2.04e-07,6;UBERON:0002358,2.04e-07,6;UBERON:0003684,2.04e-07,6;UBERON:0001178,2.04e-07,6;UBERON:0007846,4.52e-07,3;UBERON:0000043,4.52e-07,3;UBERON:0007845,4.52e-07,3;UBERON:0001135,6.98e-07,15 | |||
|phase1_expression=1.09007027562334,9.42042305120326,0.845726424575827,6.00439790118782,7.15137751083661,14.8297549097063,5.06599756336621,0,0,0,0,0,0,0.37129905888014,4.63956326019082,12.7741777825837,11.4511960324556,11.684961446198,7.80692478064811,0,0.612002073732759,0,0,0,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,0.289693037921647,0.795285947051099,5.83961844363163,0.0945348171640679,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.47880366186723,0.25326102332916,0.264818361626438,3.72887606973458,2.12801029319014,1.12135520028461,0,0.24666754841716,0,0.808264032418128,0.163461903113459,0,0.576175924479999,0,1.24864030732128,0,1.49448680551801,1.40921398372518,0.809364721840658,1.26405726032024,0,0.737005903870608,0.206651562351531,1.18800285728205,11.3742787468136,0,0,0,0.125118519871964,0.554128230968366,10.5354629011401,18.6957555437402,9.76547382892879,0,5.91985797773244,1.70845911054854,3.17897851739343,5.40163972951924,3.81294358182224,2.06112432036503,1.67505170698431,1.0126579934476,5.74878330451072,4.54380793639406,1.84099797284599,0.323292113637624,7.10019185033229,3.32481924151213,2.54340888465731,0,0,0,0,0,0,0.10366105501537,0,0,26.5964204960687,36.6647334769945,1.38134921352481,4.17931135228781,5.0531563716871,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44331342025273,0,0.234817388471643,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.822619941626588,0,0,0,0,0.07333828582095,0,0,5.071816515336,1.86156681609409,5.2003718455683,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.479249710983165,1.14861935834114,1.42636905040718,1.59259437334337,5.54786070886035,1.79060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.858840442033979,2.50085260529839,0.813795071099207,3.11956292296211,29.797641129126,16.2433487484953,4.91993942969395,0.601892199455438,0,1.03473071292505,2.65690239414175,1.65932251687533,1.21637060255316,0,0,0,0,0,0,0,0.30239029332968,0.744323423456331,0.920771839728375,19.084886421449,1.02511319404561,1.53512174720011,6.75586468803151,10.3892646511494,5.85996836450091,3.19611105563629,0.246381468041427,5.19254429183621,4.53220475993841,0,0,0,0,3.27764102412091,4.327105693661,0,0,0,0,0,0,0,0.863663664408557,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0.366277859273374,0,0,0,0,0,0.154048617114644,0,2.48105830472155,0,0.290033387828457,0.681813019328807,0,0,0,0,0,1.39453664789186,3.77774816196768,0.6970372701606,0.308033580176089,0,0.869932992075073,0.37064843820784,0,0,0,2.47819252100972,0.255897791311334,0.42793898803392,0,0,0.539617372749944,4.39259247577688,2.70968525395079,0,1.58510321173008,3.37006764991185,0,2.68084838594413,5.28250733783777,0.818999468447914,1.55545975149084,0,0,0,0,0,0,0.811641507850816,1.8589409885985,0,0,0,0.7133421029625,0,4.01104507065562,2.96365403663912,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.281338832821026,0.222617410045812,0,0,0.398495976502139,0.552567831062295,0,0,0,4.3545542272653,0,0,0,0.0986434056369336,0,2.22273980289274,0.969332746095218,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0.0884575645033392,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.410716136675979,0,0.429765441419957,0,0,0,0,0.199679000498991,0,0,0,16.2134947594082,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08599920350743,0,0.979762080328227,1.19730191562487,0,2.21504428321048,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0.298509605773748,2.10341978862502,0,0.568209015825267,0,1.77962244319307,1.60188047877847,0.907385542579434,1.70980920641059,5.17493024963719,2.23015474029183,0.449803112163605,0.931577741257556,0.414706207840855,8.50693486585583,2.08698024724694,0.150257608997218,0,1.22061219961398,11.8201628481664,0.429642228169954,5.56840511854192,1.59238355479446,0.400027764663154,2.40376993627955,3.36749488765919,0,0,0,0.521988583930423,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,2.83757976783418,0,0,0,0,0,0,0,0,0,0,0,3.18004350653419,0,0,3.87943538059752,1.2249819094128,0,0,0.319267718114302,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0,0,0,0,1.60342272946051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,6.11737612876141,0,0,0,0,0,0,0,0,0.286679166302903,0.157771562193185,0.0679914901909147,0,0,23.0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| ||
|short_description=p5@GREM1 | |||
}} | }} |
Latest revision as of 04:33, 17 September 2015
Short description: | p5@GREM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_GREM1_5end |
Coexpression cluster: | C316_hepatic_Hair_Fibroblast_spindle_Preadipocyte_tenocyte_Ewing |
Association with transcript: | 177bp_to_AF045800, BC069525, CU686886, HQ448400_5end |
EntrezGene: | GREM1 |
HGNC: | 2001 |
UniProt: | O60565 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.45e-26 | 76 |
skin fibroblast | 5.35e-22 | 23 |
multi fate stem cell | 1.05e-16 | 427 |
somatic stem cell | 3.98e-16 | 433 |
stem cell | 2.21e-15 | 441 |
connective tissue cell | 3.21e-11 | 361 |
preadipocyte | 4.14e-11 | 12 |
mesenchymal cell | 1.16e-10 | 354 |
hair follicle cell | 1.11e-09 | 5 |
motile cell | 1.39e-08 | 386 |
fibrocyte | 4.52e-07 | 3 |
tendon cell | 4.52e-07 | 3 |
muscle precursor cell | 6.18e-07 | 58 |
myoblast | 6.18e-07 | 58 |
multi-potent skeletal muscle stem cell | 6.18e-07 | 58 |
skeletal muscle myoblast | 6.30e-07 | 4 |
fat cell | 9.33e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
integument | 2.52e-22 | 46 |
integumental system | 2.52e-22 | 46 |
skin of body | 7.56e-20 | 41 |
surface structure | 3.96e-14 | 99 |
connective tissue | 4.37e-12 | 371 |
dense mesenchyme tissue | 6.29e-11 | 73 |
somite | 2.16e-10 | 71 |
presomitic mesoderm | 2.16e-10 | 71 |
presumptive segmental plate | 2.16e-10 | 71 |
dermomyotome | 2.16e-10 | 71 |
trunk paraxial mesoderm | 2.16e-10 | 71 |
paraxial mesoderm | 3.78e-10 | 72 |
presumptive paraxial mesoderm | 3.78e-10 | 72 |
hair follicle | 1.11e-09 | 5 |
hair follicle placode | 1.11e-09 | 5 |
multilaminar epithelium | 1.31e-09 | 83 |
epithelial vesicle | 7.75e-09 | 78 |
dermis | 2.35e-08 | 9 |
dermatome | 2.35e-08 | 9 |
future dermis | 2.35e-08 | 9 |
omentum | 2.04e-07 | 6 |
peritoneum | 2.04e-07 | 6 |
abdominal cavity | 2.04e-07 | 6 |
visceral peritoneum | 2.04e-07 | 6 |
dense regular connective tissue | 4.52e-07 | 3 |
tendon | 4.52e-07 | 3 |
regular connective tissue | 4.52e-07 | 3 |
smooth muscle tissue | 6.98e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.54e-09 | 5 |
myotonic disease | 3.54e-09 | 5 |
muscle tissue disease | 3.54e-09 | 5 |
myopathy | 3.54e-09 | 5 |
muscular disease | 3.54e-09 | 5 |
myotonic dystrophy | 3.54e-09 | 5 |