FFCP PHASE1:Hg19::chr3:58200719..58200729,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1776 | |EntrezGene=1776 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2959 | |HGNC=2959 | ||
|TSSclassifier=strong | |||
|UniProt=E9PES0,Q59F48 | |UniProt=E9PES0,Q59F48 | ||
|association_with_transcript=123bp_to_ENST00000450710,uc003djq.1_5end | |association_with_transcript=123bp_to_ENST00000450710,uc003djq.1_5end | ||
|cluster_id=chr3:58200719..58200729,- | |||
|coexpression_cluster_id=C2310 | |||
|description=CAGE_peak_16_at_DNASE1L3_5end | |description=CAGE_peak_16_at_DNASE1L3_5end | ||
|id=chr3:58200719..58200729,- | |id=chr3:58200719..58200729,- | ||
|ontology_enrichment_celltype=CL:0000945!1.25e-32!24;CL:0000826!1.25e-32!24;CL:0000784!1.28e-17!3;CL:0000838!1.14e-14!52;CL:0000542!2.22e-14!53;CL:0000051!2.22e-14!53;CL:0000946!3.98e-14!1;CL:0000786!3.98e-14!1;CL:0000980!3.98e-14!1;CL:0000738!2.28e-09!140;CL:0000785!1.05e-07!2;CL:0000955!1.05e-07!2;CL:0000818!1.05e-07!2;CL:0000954!1.05e-07!2;CL:0000816!1.05e-07!2;CL:0002087!2.00e-07!119;CL:0000037!2.30e-07!172;CL:0000566!2.30e-07!172;CL:0002031!4.39e-07!124;CL:0000988!6.99e-07!182 | |ontology_enrichment_celltype=CL:0000945!1.25e-32!24;CL:0000826!1.25e-32!24;CL:0000784!1.28e-17!3;CL:0000838!1.14e-14!52;CL:0000542!2.22e-14!53;CL:0000051!2.22e-14!53;CL:0000946!3.98e-14!1;CL:0000786!3.98e-14!1;CL:0000980!3.98e-14!1;CL:0000738!2.28e-09!140;CL:0000785!1.05e-07!2;CL:0000955!1.05e-07!2;CL:0000818!1.05e-07!2;CL:0000954!1.05e-07!2;CL:0000816!1.05e-07!2;CL:0002087!2.00e-07!119;CL:0000037!2.30e-07!172;CL:0000566!2.30e-07!172;CL:0002031!4.39e-07!124;CL:0000988!6.99e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0000946;4.66e-66;1!CL:0000786;4.66e-66;1!CL:0000945;4.08e-12;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000946,4.66e-66,1;CL:0000786,4.66e-66,1;CL:0000980,4.66e-66,1;CL:0000785,7.05e-34,2;CL:0000955,7.05e-34,2;CL:0000818,7.05e-34,2;CL:0000954,7.05e-34,2;CL:0000816,7.05e-34,2;CL:0000817,4.09e-23,3;CL:0000945,4.20e-12,24;CL:0000826,4.20e-12,24 | |||
|ontology_enrichment_development_v019=CL:0000954;7.04e-34;2!UBERON:0004872;8.57e-11;7 | |||
|ontology_enrichment_disease=DOID:2355!3.50e-14!1;DOID:630!9.73e-14!1;DOID:0050177!9.73e-14!1;DOID:0050427!9.73e-14!1;DOID:0060058!5.20e-12!10;DOID:74!9.87e-08!2 | |||
|ontology_enrichment_disease_v019=DOID:2355;1.71e-66;1!DOID:74;4.27e-34;2!DOID:0060058;2.08e-27;10!DOID:1287;8.00e-18;4 | |||
|ontology_enrichment_disease_v019_2=DOID:2355,2.39e-66,1;DOID:74,5.04e-34,2;DOID:0060058,2.08e-27,10;DOID:1287,8.69e-18,4 | |||
|ontology_enrichment_uberon=UBERON:0002106!1.39e-17!3;UBERON:0004854!1.39e-17!3;UBERON:0009034!1.39e-17!3;UBERON:0002095!1.39e-17!3;UBERON:0004782!1.39e-17!3;UBERON:0003281!1.39e-17!3;UBERON:0009664!1.39e-17!3;UBERON:0002296!1.39e-17!3;UBERON:0005602!1.39e-17!3;UBERON:0001179!1.39e-17!3;UBERON:0006293!1.39e-17!3;UBERON:0004177!4.58e-08!7;UBERON:0000945!3.67e-07!8;UBERON:0010039!3.67e-07!8 | |ontology_enrichment_uberon=UBERON:0002106!1.39e-17!3;UBERON:0004854!1.39e-17!3;UBERON:0009034!1.39e-17!3;UBERON:0002095!1.39e-17!3;UBERON:0004782!1.39e-17!3;UBERON:0003281!1.39e-17!3;UBERON:0009664!1.39e-17!3;UBERON:0002296!1.39e-17!3;UBERON:0005602!1.39e-17!3;UBERON:0001179!1.39e-17!3;UBERON:0006293!1.39e-17!3;UBERON:0004177!4.58e-08!7;UBERON:0000945!3.67e-07!8;UBERON:0010039!3.67e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;2.93e-23;3!UBERON:0004177;1.50e-14;5!UBERON:0005057;1.50e-14;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,2.62e-23,3;UBERON:0004854,2.62e-23,3;UBERON:0009034,2.62e-23,3;UBERON:0002095,2.62e-23,3;UBERON:0004782,2.62e-23,3;UBERON:0003281,2.62e-23,3;UBERON:0009664,2.62e-23,3;UBERON:0002296,2.62e-23,3;UBERON:0005602,2.62e-23,3;UBERON:0001179,2.62e-23,3;UBERON:0006293,2.62e-23,3;UBERON:0004177,8.16e-11,7;UBERON:0005057,8.16e-11,7;UBERON:0000945,1.24e-09,8;UBERON:0010039,1.24e-09,8;UBERON:0004457,7.48e-07,12;UBERON:0000042,7.48e-07,12;UBERON:0003887,7.48e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993374274723366,0.738905305049512,0.708397031823113,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492339221844278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.37085329784197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03710588800201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,2.79835236589801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993374274723366,0.738905305049512,0.708397031823113,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492339221844278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.37085329784197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03710588800201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,2.79835236589801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | ||
|short_description=p16@DNASE1L3 | |short_description=p16@DNASE1L3 | ||
}} | }} |
Latest revision as of 05:18, 19 September 2015
Short description: | p16@DNASE1L3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_DNASE1L3_5end |
Coexpression cluster: | C2310_splenic_hereditary_thyroid_B_lymphangiectasia_plasma_throat |
Association with transcript: | 123bp_to_ENST00000450710, uc003djq.1_5end |
EntrezGene: | DNASE1L3 |
HGNC: | 2959 |
UniProt: | E9PES0Q59F48 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
antibody secreting cell | 4.66e-66 | 1 |
plasma cell | 4.66e-66 | 1 |
plasmablast | 4.66e-66 | 1 |
mature B cell | 7.05e-34 | 2 |
pre-B-II cell | 7.05e-34 | 2 |
transitional stage B cell | 7.05e-34 | 2 |
small pre-B-II cell | 7.05e-34 | 2 |
immature B cell | 7.05e-34 | 2 |
precursor B cell | 4.09e-23 | 3 |
lymphocyte of B lineage | 4.20e-12 | 24 |
pro-B cell | 4.20e-12 | 24 |
Ontology term | p-value | n |
---|---|---|
spleen | 2.62e-23 | 3 |
gastrointestinal system mesentery | 2.62e-23 | 3 |
stomach region | 2.62e-23 | 3 |
mesentery | 2.62e-23 | 3 |
gastrointestinal system serosa | 2.62e-23 | 3 |
mesentery of stomach | 2.62e-23 | 3 |
gut mesentery | 2.62e-23 | 3 |
dorsal mesentery | 2.62e-23 | 3 |
dorsal mesogastrium | 2.62e-23 | 3 |
peritoneal cavity | 2.62e-23 | 3 |
spleen primordium | 2.62e-23 | 3 |
hemopoietic organ | 8.16e-11 | 7 |
immune organ | 8.16e-11 | 7 |
stomach | 1.24e-09 | 8 |
food storage organ | 1.24e-09 | 8 |
cavity lining | 7.48e-07 | 12 |
serous membrane | 7.48e-07 | 12 |
intraembryonic coelom | 7.48e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
anemia | 2.39e-66 | 1 |
hematopoietic system disease | 5.04e-34 | 2 |
lymphoma | 2.08e-27 | 10 |
cardiovascular system disease | 8.69e-18 | 4 |