FFCP PHASE1:Hg19::chr4:109088130..109088163,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51176 | |EntrezGene=51176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6551 | |HGNC=6551 | ||
|TSSclassifier=strong | |||
|UniProt=D6RAB1,B7Z8E2,E9PDK3,Q659G9,Q9UJU2 | |UniProt=D6RAB1,B7Z8E2,E9PDK3,Q659G9,Q9UJU2 | ||
|association_with_transcript=-177bp_to_ENST00000515500,NM_001166119_5end | |association_with_transcript=-177bp_to_ENST00000515500,NM_001166119_5end | ||
|cluster_id=chr4:109088130..109088163,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_13_at_LEF1_5end | |description=CAGE_peak_13_at_LEF1_5end | ||
|id=chr4:109088130..109088163,- | |id=chr4:109088130..109088163,- | ||
|ontology_enrichment_celltype=CL:0000791!3.39e-21!18;CL:0000789!3.39e-21!18;CL:0002420!3.39e-21!18;CL:0002419!3.39e-21!18;CL:0000790!3.39e-21!18;CL:0000084!1.68e-19!25;CL:0000827!1.68e-19!25;CL:0000625!5.64e-15!11;CL:0000542!4.05e-14!53;CL:0000051!4.05e-14!53;CL:0000838!2.43e-13!52;CL:0000624!1.73e-09!6;CL:0002087!2.68e-07!119 | |ontology_enrichment_celltype=CL:0000791!3.39e-21!18;CL:0000789!3.39e-21!18;CL:0002420!3.39e-21!18;CL:0002419!3.39e-21!18;CL:0000790!3.39e-21!18;CL:0000084!1.68e-19!25;CL:0000827!1.68e-19!25;CL:0000625!5.64e-15!11;CL:0000542!4.05e-14!53;CL:0000051!4.05e-14!53;CL:0000838!2.43e-13!52;CL:0000624!1.73e-09!6;CL:0002087!2.68e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000791;8.48e-50;18!CL:0000789;8.48e-50;18!CL:0002419;8.48e-50;18!CL:0000084;3.88e-48;25!CL:0000625;6.18e-34;11!CL:0000624;1.28e-20;6!CL:0000542;1.85e-16;53!CL:0000898;4.82e-11;3!CL:0000226;2.95e-10;3!CL:0000842;2.95e-10;3!CL:0000623;1.20e-09;3!CL:0000815;3.51e-08;2!CL:0000792;3.51e-08;2!CL:0002677;3.51e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,7.30e-50,18;CL:0000789,7.30e-50,18;CL:0002420,7.30e-50,18;CL:0002419,7.30e-50,18;CL:0000790,7.30e-50,18;CL:0000084,3.56e-48,25;CL:0000827,3.56e-48,25;CL:0000625,5.90e-34,11;CL:0000542,1.24e-31,53;CL:0000051,1.24e-31,53;CL:0000838,9.40e-30,52;CL:0000624,1.14e-20,6;CL:0002087,5.43e-17,115;CL:0000738,1.06e-16,136;CL:0000037,5.09e-14,168;CL:0000988,7.09e-13,177;CL:0002031,3.29e-11,120;CL:0000898,4.30e-11,3;CL:0002032,7.29e-11,161;CL:0000837,7.29e-11,161;CL:0000226,3.51e-10,3;CL:0000842,3.51e-10,3;CL:0000623,1.08e-09,3;CL:0000825,1.08e-09,3;CL:0000815,3.51e-08,2;CL:0000792,3.51e-08,2;CL:0002677,3.51e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000790;8.48e-50;18!CL:0000051;1.85e-16;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.77e-15!115;UBERON:0000178!4.29e-09!15;UBERON:0000179!4.29e-09!15;UBERON:0000463!4.29e-09!15 | |ontology_enrichment_uberon=UBERON:0007023!3.77e-15!115;UBERON:0000178!4.29e-09!15;UBERON:0000179!4.29e-09!15;UBERON:0000463!4.29e-09!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.63e-15;15!UBERON:0000179;5.63e-15;15!UBERON:0000463;5.63e-15;15!UBERON:0002390;8.54e-09;32!UBERON:0002193;7.63e-08;42!UBERON:0002370;1.13e-07;2!UBERON:0005058;1.13e-07;2!UBERON:0009113;1.13e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.27e-15,15;UBERON:0000179,6.27e-15,15;UBERON:0000463,6.27e-15,15;UBERON:0002370,4.87e-08,4;UBERON:0005058,4.87e-08,4;UBERON:0009113,4.87e-08,4;UBERON:0003295,4.87e-08,4;UBERON:0005562,4.87e-08,4 | |||
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| ||
|short_description=p13@LEF1 | |short_description=p13@LEF1 | ||
}} | }} |
Latest revision as of 14:55, 24 September 2015
Short description: | p13@LEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_LEF1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -177bp_to_ENST00000515500, NM_001166119_5end |
EntrezGene: | LEF1 |
HGNC: | 6551 |
UniProt: | D6RAB1B7Z8E2E9PDK3Q659G9Q9UJU2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 7.30e-50 | 18 |
alpha-beta T cell | 7.30e-50 | 18 |
immature T cell | 7.30e-50 | 18 |
mature T cell | 7.30e-50 | 18 |
immature alpha-beta T cell | 7.30e-50 | 18 |
T cell | 3.56e-48 | 25 |
pro-T cell | 3.56e-48 | 25 |
CD8-positive, alpha-beta T cell | 5.90e-34 | 11 |
lymphocyte | 1.24e-31 | 53 |
common lymphoid progenitor | 1.24e-31 | 53 |
lymphoid lineage restricted progenitor cell | 9.40e-30 | 52 |
CD4-positive, alpha-beta T cell | 1.14e-20 | 6 |
nongranular leukocyte | 5.43e-17 | 115 |
leukocyte | 1.06e-16 | 136 |
hematopoietic stem cell | 5.09e-14 | 168 |
hematopoietic cell | 7.09e-13 | 177 |
hematopoietic lineage restricted progenitor cell | 3.29e-11 | 120 |
naive T cell | 4.30e-11 | 3 |
hematopoietic oligopotent progenitor cell | 7.29e-11 | 161 |
hematopoietic multipotent progenitor cell | 7.29e-11 | 161 |
single nucleate cell | 3.51e-10 | 3 |
mononuclear cell | 3.51e-10 | 3 |
natural killer cell | 1.08e-09 | 3 |
pro-NK cell | 1.08e-09 | 3 |
regulatory T cell | 3.51e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.51e-08 | 2 |
naive regulatory T cell | 3.51e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 6.27e-15 | 15 |
haemolymphatic fluid | 6.27e-15 | 15 |
organism substance | 6.27e-15 | 15 |
thymus | 4.87e-08 | 4 |
hemolymphoid system gland | 4.87e-08 | 4 |
thymic region | 4.87e-08 | 4 |
pharyngeal gland | 4.87e-08 | 4 |
thymus primordium | 4.87e-08 | 4 |