FFCP PHASE1:Hg19::chr4:151502958..151502978,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=987 | |EntrezGene=987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1742 | |HGNC=1742 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-84bp_to_ENST00000503716,uc003ils.3_5end | |association_with_transcript=-84bp_to_ENST00000503716,uc003ils.3_5end | ||
|cluster_id=chr4:151502958..151502978,- | |||
|coexpression_cluster_id=C1272 | |||
|description=CAGE_peak_6_at_LRBA_5end | |description=CAGE_peak_6_at_LRBA_5end | ||
|id=chr4:151502958..151502978,- | |id=chr4:151502958..151502978,- | ||
|ontology_enrichment_celltype=CL:0000064!1.11e-10!3;CL:0005012!1.11e-10!3;CL:0000067!1.11e-10!3;CL:0002304!1.11e-10!3;CL:0002552!8.74e-07!5 | |ontology_enrichment_celltype=CL:0000064!1.11e-10!3;CL:0005012!1.11e-10!3;CL:0000067!1.11e-10!3;CL:0002304!1.11e-10!3;CL:0002552!8.74e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000333;4.28e-17;5!CL:0000062;8.64e-10;9!CL:0000064;7.02e-08;3!CL:0000067;7.02e-08;3!CL:0005012;7.02e-08;3!CL:0002304;7.02e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000062,3.50e-08,11;CL:0000375,3.50e-08,11;CL:0000335,3.50e-08,11;CL:0000064,6.34e-08,3;CL:0000067,6.34e-08,3;CL:0005012,6.34e-08,3;CL:0002304,6.34e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000335;3.56e-08;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;2.04e-14;6!DOID:3307;3.52e-11;2!DOID:171;4.94e-09;10!DOID:3095;7.92e-09;22!DOID:2994;7.92e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,2.04e-14,6;DOID:3307,2.73e-11,2;DOID:171,4.94e-09,10;DOID:3095,7.41e-09,22;DOID:2994,7.41e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0007625!1.40e-17!11;UBERON:0001444!1.50e-13!48;UBERON:0001456!1.75e-13!21;UBERON:0000488!2.79e-13!4;UBERON:0000019!3.86e-12!19;UBERON:0000047!3.86e-12!19;UBERON:0004088!3.86e-12!19;UBERON:0003072!3.86e-12!19;UBERON:0003071!3.86e-12!19;UBERON:0004128!3.86e-12!19;UBERON:0000970!1.91e-11!20;UBERON:0002104!8.07e-11!21;UBERON:0001778!1.11e-10!3;UBERON:0001775!1.11e-10!3;UBERON:0000153!9.51e-10!129;UBERON:0007811!9.51e-10!129;UBERON:0000020!9.90e-10!23;UBERON:0000988!1.40e-09!3;UBERON:0001032!2.96e-09!24;UBERON:0004456!2.96e-09!24;UBERON:0001155!3.34e-09!9;UBERON:0002298!3.61e-09!8;UBERON:0002203!7.31e-09!6;UBERON:0001768!7.31e-09!6;UBERON:0000033!1.37e-08!123;UBERON:0001801!1.15e-07!14;UBERON:0000059!1.86e-07!11;UBERON:0005085!2.25e-07!29;UBERON:0000063!3.44e-07!97;UBERON:0000341!3.84e-07!2;UBERON:0000013!7.06e-07!5;UBERON:0002410!7.06e-07!5;UBERON:0004121!8.81e-07!169;UBERON:0002148!9.44e-07!2;UBERON:0009662!9.44e-07!2 | |ontology_enrichment_uberon=UBERON:0007625!1.40e-17!11;UBERON:0001444!1.50e-13!48;UBERON:0001456!1.75e-13!21;UBERON:0000488!2.79e-13!4;UBERON:0000019!3.86e-12!19;UBERON:0000047!3.86e-12!19;UBERON:0004088!3.86e-12!19;UBERON:0003072!3.86e-12!19;UBERON:0003071!3.86e-12!19;UBERON:0004128!3.86e-12!19;UBERON:0000970!1.91e-11!20;UBERON:0002104!8.07e-11!21;UBERON:0001778!1.11e-10!3;UBERON:0001775!1.11e-10!3;UBERON:0000153!9.51e-10!129;UBERON:0007811!9.51e-10!129;UBERON:0000020!9.90e-10!23;UBERON:0000988!1.40e-09!3;UBERON:0001032!2.96e-09!24;UBERON:0004456!2.96e-09!24;UBERON:0001155!3.34e-09!9;UBERON:0002298!3.61e-09!8;UBERON:0002203!7.31e-09!6;UBERON:0001768!7.31e-09!6;UBERON:0000033!1.37e-08!123;UBERON:0001801!1.15e-07!14;UBERON:0000059!1.86e-07!11;UBERON:0005085!2.25e-07!29;UBERON:0000063!3.44e-07!97;UBERON:0000341!3.84e-07!2;UBERON:0000013!7.06e-07!5;UBERON:0002410!7.06e-07!5;UBERON:0004121!8.81e-07!169;UBERON:0002148!9.44e-07!2;UBERON:0009662!9.44e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;4.28e-17;5!UBERON:0002410;4.28e-17;5!UBERON:0000010;6.20e-10;8!UBERON:0001778;7.02e-08;3!UBERON:0001775;7.02e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,4.28e-17,5;UBERON:0002410,4.28e-17,5;UBERON:0000010,6.20e-10,8;UBERON:0001778,6.34e-08,3;UBERON:0001775,6.34e-08,3 | |||
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| ||
|short_description=p6@LRBA | |short_description=p6@LRBA | ||
}} | }} |
Latest revision as of 01:42, 16 September 2015
Short description: | p6@LRBA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LRBA_5end |
Coexpression cluster: | C1272_medulloblastoma_neuroblastoma_colon_Osteoblast_normal_Ciliary_pons |
Association with transcript: | -84bp_to_ENST00000503716, uc003ils.3_5end |
EntrezGene: | LRBA |
HGNC: | 1742 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
osteoblast | 3.50e-08 | 11 |
osteoprogenitor cell | 3.50e-08 | 11 |
mesenchyme condensation cell | 3.50e-08 | 11 |
ciliated cell | 6.34e-08 | 3 |
ciliated epithelial cell | 6.34e-08 | 3 |
multi-ciliated epithelial cell | 6.34e-08 | 3 |
non-pigmented ciliary epithelial cell | 6.34e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 4.28e-17 | 5 |
autonomic nervous system | 4.28e-17 | 5 |
peripheral nervous system | 6.20e-10 | 8 |
ciliary epithelium | 6.34e-08 | 3 |
ciliary body | 6.34e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 2.04e-14 | 6 |
teratoma | 2.73e-11 | 2 |
neuroectodermal tumor | 4.94e-09 | 10 |
germ cell and embryonal cancer | 7.41e-09 | 22 |
germ cell cancer | 7.41e-09 | 22 |