FFCP PHASE1:Hg19::chr4:3387396..3387446,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6002 | |EntrezGene=6002 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9994 | |HGNC=9994 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000503041,ENST00000512990_5end | |association_with_transcript=0bp_to_ENST00000503041,ENST00000512990_5end | ||
|cluster_id=chr4:3387396..3387446,+ | |||
|coexpression_cluster_id=C806 | |||
|description=CAGE_peak_4_at_RGS12_5end | |description=CAGE_peak_4_at_RGS12_5end | ||
|id=chr4:3387396..3387446,+ | |id=chr4:3387396..3387446,+ | ||
|ontology_enrichment_celltype=CL:0000557!1.58e-42!71;CL:0000839!5.87e-40!70;CL:0002009!1.01e-39!65;CL:0000766!1.15e-39!76;CL:0002057!1.33e-38!42;CL:0002194!3.83e-38!63;CL:0000576!3.83e-38!63;CL:0000040!3.83e-38!63;CL:0000559!3.83e-38!63;CL:0000860!1.24e-34!45;CL:0000763!6.75e-26!112;CL:0000049!6.75e-26!112;CL:0000738!1.21e-17!140;CL:0002031!1.39e-16!124;CL:0002087!9.13e-15!119;CL:0000115!1.08e-12!35;CL:0000037!1.76e-12!172;CL:0000566!1.76e-12!172;CL:0002032!1.01e-11!165;CL:0000837!1.01e-11!165;CL:0000988!1.95e-11!182;CL:0002139!1.42e-09!24;CL:0002393!6.36e-09!9;CL:0002397!6.36e-09!9;CL:0002078!3.89e-08!44;CL:0000071!6.05e-07!18;CL:0002546!6.05e-07!18 | |ontology_enrichment_celltype=CL:0000557!1.58e-42!71;CL:0000839!5.87e-40!70;CL:0002009!1.01e-39!65;CL:0000766!1.15e-39!76;CL:0002057!1.33e-38!42;CL:0002194!3.83e-38!63;CL:0000576!3.83e-38!63;CL:0000040!3.83e-38!63;CL:0000559!3.83e-38!63;CL:0000860!1.24e-34!45;CL:0000763!6.75e-26!112;CL:0000049!6.75e-26!112;CL:0000738!1.21e-17!140;CL:0002031!1.39e-16!124;CL:0002087!9.13e-15!119;CL:0000115!1.08e-12!35;CL:0000037!1.76e-12!172;CL:0000566!1.76e-12!172;CL:0002032!1.01e-11!165;CL:0000837!1.01e-11!165;CL:0000988!1.95e-11!182;CL:0002139!1.42e-09!24;CL:0002393!6.36e-09!9;CL:0002397!6.36e-09!9;CL:0002078!3.89e-08!44;CL:0000071!6.05e-07!18;CL:0002546!6.05e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.47e-51;33!CL:0002057;2.47e-51;33!CL:0000473;1.47e-50;39!CL:0000234;1.47e-50;39!CL:0000576;2.00e-44;48!CL:0000766;7.58e-36;69!CL:0000763;1.34e-15;100!CL:0000115;3.40e-11;36!CL:0000738;6.82e-11;136!CL:0000235;1.09e-10;6!CL:0002393;1.16e-10;6!CL:0002397;1.16e-10;6!CL:0002087;3.13e-10;104!CL:0000148;1.05e-08;10!CL:0002567;9.30e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,7.48e-85,67;CL:0002009,7.14e-82,61;CL:0000766,8.78e-81,72;CL:0000473,2.06e-80,48;CL:0000234,2.06e-80,48;CL:0000839,2.62e-80,66;CL:0002194,7.34e-79,59;CL:0000576,7.34e-79,59;CL:0000040,7.34e-79,59;CL:0000559,7.34e-79,59;CL:0000860,1.06e-70,42;CL:0002057,1.06e-70,42;CL:0000763,4.01e-53,108;CL:0000049,4.01e-53,108;CL:0000738,7.41e-41,136;CL:0002031,4.47e-39,120;CL:0002087,2.48e-36,115;CL:0000037,1.85e-30,168;CL:0002032,3.54e-29,161;CL:0000837,3.54e-29,161;CL:0000988,6.72e-28,177;CL:0002393,3.11e-15,9;CL:0002397,3.11e-15,9;CL:0000115,2.57e-12,36;CL:0000235,1.06e-10,6;CL:0002078,7.85e-09,45;CL:0000148,1.07e-08,10;CL:0000541,1.07e-08,10;CL:0000219,4.98e-07,386;CL:0002567,9.24e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.66e-50;42!CL:0000049;7.28e-15;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.38e-36!112;UBERON:0002371!1.34e-34!80;UBERON:0002390!2.00e-33!102;UBERON:0003061!2.00e-33!102;UBERON:0002405!1.09e-32!115;UBERON:0001474!2.30e-31!86;UBERON:0004765!1.70e-25!101;UBERON:0001434!1.70e-25!101;UBERON:0003081!5.90e-18!216;UBERON:0007023!1.54e-16!115;UBERON:0000467!4.81e-10!625;UBERON:0000480!6.26e-10!626;UBERON:0002050!1.17e-09!605;UBERON:0005423!1.17e-09!605;UBERON:0000923!2.40e-09!604;UBERON:0005291!2.40e-09!604;UBERON:0006598!2.40e-09!604;UBERON:0002532!2.40e-09!604;UBERON:0000922!6.92e-09!612;UBERON:0002204!3.41e-08!167;UBERON:0000062!9.40e-08!511;UBERON:0000468!1.68e-07!659;UBERON:0001049!5.06e-07!57;UBERON:0005068!5.06e-07!57;UBERON:0006241!5.06e-07!57;UBERON:0007135!5.06e-07!57;UBERON:0001986!6.05e-07!18;UBERON:0004638!6.05e-07!18;UBERON:0004852!6.05e-07!18 | |ontology_enrichment_uberon=UBERON:0002193!4.38e-36!112;UBERON:0002371!1.34e-34!80;UBERON:0002390!2.00e-33!102;UBERON:0003061!2.00e-33!102;UBERON:0002405!1.09e-32!115;UBERON:0001474!2.30e-31!86;UBERON:0004765!1.70e-25!101;UBERON:0001434!1.70e-25!101;UBERON:0003081!5.90e-18!216;UBERON:0007023!1.54e-16!115;UBERON:0000467!4.81e-10!625;UBERON:0000480!6.26e-10!626;UBERON:0002050!1.17e-09!605;UBERON:0005423!1.17e-09!605;UBERON:0000923!2.40e-09!604;UBERON:0005291!2.40e-09!604;UBERON:0006598!2.40e-09!604;UBERON:0002532!2.40e-09!604;UBERON:0000922!6.92e-09!612;UBERON:0002204!3.41e-08!167;UBERON:0000062!9.40e-08!511;UBERON:0000468!1.68e-07!659;UBERON:0001049!5.06e-07!57;UBERON:0005068!5.06e-07!57;UBERON:0006241!5.06e-07!57;UBERON:0007135!5.06e-07!57;UBERON:0001986!6.05e-07!18;UBERON:0004638!6.05e-07!18;UBERON:0004852!6.05e-07!18 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.37e-72,76;UBERON:0001474,6.69e-66,82;UBERON:0002405,6.85e-62,93;UBERON:0004765,2.45e-60,90;UBERON:0002390,8.16e-58,98;UBERON:0003061,8.16e-58,98;UBERON:0002193,5.24e-56,108;UBERON:0001434,2.16e-52,100;UBERON:0003081,9.36e-34,203;UBERON:0002204,6.92e-24,167;UBERON:0000926,1.62e-16,315;UBERON:0004120,1.62e-16,315;UBERON:0006603,1.62e-16,315;UBERON:0002050,4.56e-08,564;UBERON:0005423,5.16e-08,581;UBERON:0000923,1.81e-07,560;UBERON:0010316,1.81e-07,560;UBERON:0005291,1.81e-07,560;UBERON:0006598,1.81e-07,560;UBERON:0010317,1.81e-07,560;UBERON:0002532,1.81e-07,560;UBERON:0000922,2.15e-07,592 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,9.8341069212226,4.22212337906934,10.0630480155449,0,0,1.47901604066715,0,0,0,5.53995408531877,8.22232234627581,4.77423915574874,10.7479427635164,10.0407036465884,15.9696851933196,15.2668150718543,24.5619363397726,23.0454858128425,20.9186133215116,36.5939420339425,35.3065262820418,9.49384894663097,20.4928565223281,14.4254160232037,25.1664346937732,30.9832648120237,36.5651513804723,25.4127158382516,33.2945503070572,24.4948598045142,23.2623758201886,32.7347607617615,38.9995646737415,7.25672860410775,19.7469021045416,15.344091019177,8.12585868160035,22.1280237629545,15.5705562248894,9.04495194924276,15.644487552606,10.6422533905507,3.02699751316684,13.6262725315399,13.9243450473989,10.985274888221,15.9453224973783,11.1119082119439,5.61643155732475,1.50176892841506,1.76798145366788,16.2457263932512,6.96208370196815,5.84525292046829,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260118695119756,0.328875809207352,0.276350017785848,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851363990735132,0.364295288292542,0,3.57002133020152,2.61194605948901,2.26028532882071,0.238490624305342,0.571994910780128,0,1.39133685156694,2.58070378531837,0.347140501607594,0.56530794192401,2.09749718104953,1.6507082516404,0.835979866147242,1.29208379584664,2.84613010149368,0.33472061276467,0,0,0.488124115096339,0,1.62028389576352,1.25019619597712,0.673588117878509,1.12611480483322,1.53316637465883,2.84779697870439,0.732806975721629,0,0,0.436094052142534,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.818238361772504,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.42893272774789,1.40241773803446,0,0,0,0,0.590789906681404,0,0,0,0.329250856225877,0,0.100528972411631,0.185176890317059,0,0,0,0,0,0.577465791044295,0.462985512576611,1.14152491340759,0,0,6.15542515218493,2.80805118167085,6.98566462757023,0,1.17587489739202,0.425325291727159,2.5971971583826,0.290633938513962,1.53353071666084,0.985326475791887,9.50923087342841,4.35389042635621,4.03535869567492,5.30218220390796,6.3497894292169,16.4255022990059,21.0991404978085,17.1072446022705,6.37530454760606,11.1126931402249,38.0149155398669,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,14.5948536769429,18.0812552915566,12.6500363689819,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0.502548796003046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0,1.24060815673732,2.15714200818617,1.70764092485511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,1.01289087829486,0,0,0,0.902399225814824,0.0770153371044148,0,0,0,5.68666920354483,4.76262374774244,0.431831832204279,7.71136263451447,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0.650060246036521,0,0,0,0.15350367472613,0,0,0,0,0,0.826424576804891,1.15314040419064,1.53135254993501,0.708104465988849,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,1.08890984861323,0.847294206991012,0.43050537267123,0,0.886860307073351,0,0,0,0,0.238231775457789,0.822724546172388,0.648473311192717,0.540031437238115,0.79312517629427,0.106824071127473,0,0.245040215981032,0,0,0,0,0,0,2.96343015813436,0,0,0,0,0,0,0,0,0.851692475380653,0,0,0,0,0.19538809540204,0,0,0,0.33307196799782,0,0,0.879049075631364,0,0.111443384277478,0,0,0,0,0,0.984685914873589,0,0,0,0.597743964753209,0.552567831062295,0,0,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0.341380344856499,0,0,0,0,0,0.885741385813839,0.60298219312704,0,0.442317039724898,0.295547618953547,0,0,0.278847488557207,0.230850775511391,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0.476809736941136,0,0,0,0,0.995261931078505,0.265372693510018,0,0,0,0,1.14581926067151,0,0.702793337176017,0,0.782658475728359,0,1.97292201424695,1.20990716048664,0,0.758238955541855,0,0,0,0,0,0,0,0,0,0,0.435296032902013,0.873633341210151,0,0,0,0,0.484945082442097,0.529536760149002,0,0,0,0.189932387867636,0,0,0.85381197895741,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0.600420288709789,1.23214841002794,0,0,0.262887354279314,0,0.229160424011684,1.43574604915363,0,0,0.223171457441873,0.134366944973453,0,0,0.393915911536118,0.412079291905832,0.26961417541674,0,0,0,0.817220436669454,0,0,0,2.92466059016951,6.96421759102155,0.546746009922222,0,0.788057072991982,0,0,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0.129282956361551,1.71902382265497,0,0,0.213574825135389,0,0.828478110694391,0.496166021811951,0,0,1.27668251554036,0,0,0.612691153526923,0,0,0,0,0.500763722825999,0,1.44207766997908,0.807253238237985,0,0.499921631848426,10.4637891103737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0.327130788511688,0,0,0,0,0,0,0,0,0.699397538597222,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450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| ||
|short_description=p4@RGS12 | |short_description=p4@RGS12 | ||
}} | }} |
Latest revision as of 14:11, 17 September 2015
Short description: | p4@RGS12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RGS12_5end |
Coexpression cluster: | C806_Melanocyte_CD14_Monocytederived_Macrophage_granulocyte_Mast_Eosinophils |
Association with transcript: | 0bp_to_ENST00000503041, ENST00000512990_5end |
EntrezGene: | RGS12 |
HGNC: | 9994 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 7.48e-85 | 67 |
macrophage dendritic cell progenitor | 7.14e-82 | 61 |
myeloid leukocyte | 8.78e-81 | 72 |
defensive cell | 2.06e-80 | 48 |
phagocyte | 2.06e-80 | 48 |
myeloid lineage restricted progenitor cell | 2.62e-80 | 66 |
monopoietic cell | 7.34e-79 | 59 |
monocyte | 7.34e-79 | 59 |
monoblast | 7.34e-79 | 59 |
promonocyte | 7.34e-79 | 59 |
classical monocyte | 1.06e-70 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.06e-70 | 42 |
myeloid cell | 4.01e-53 | 108 |
common myeloid progenitor | 4.01e-53 | 108 |
leukocyte | 7.41e-41 | 136 |
hematopoietic lineage restricted progenitor cell | 4.47e-39 | 120 |
nongranular leukocyte | 2.48e-36 | 115 |
hematopoietic stem cell | 1.85e-30 | 168 |
hematopoietic oligopotent progenitor cell | 3.54e-29 | 161 |
hematopoietic multipotent progenitor cell | 3.54e-29 | 161 |
hematopoietic cell | 6.72e-28 | 177 |
intermediate monocyte | 3.11e-15 | 9 |
CD14-positive, CD16-positive monocyte | 3.11e-15 | 9 |
endothelial cell | 2.57e-12 | 36 |
macrophage | 1.06e-10 | 6 |
meso-epithelial cell | 7.85e-09 | 45 |
melanocyte | 1.07e-08 | 10 |
melanoblast | 1.07e-08 | 10 |
motile cell | 4.98e-07 | 386 |
light melanocyte | 9.24e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.37e-72 | 76 |
bone element | 6.69e-66 | 82 |
immune system | 6.85e-62 | 93 |
skeletal element | 2.45e-60 | 90 |
hematopoietic system | 8.16e-58 | 98 |
blood island | 8.16e-58 | 98 |
hemolymphoid system | 5.24e-56 | 108 |
skeletal system | 2.16e-52 | 100 |
lateral plate mesoderm | 9.36e-34 | 203 |
musculoskeletal system | 6.92e-24 | 167 |
mesoderm | 1.62e-16 | 315 |
mesoderm-derived structure | 1.62e-16 | 315 |
presumptive mesoderm | 1.62e-16 | 315 |
embryonic structure | 4.56e-08 | 564 |
developing anatomical structure | 5.16e-08 | 581 |
germ layer | 1.81e-07 | 560 |
germ layer / neural crest | 1.81e-07 | 560 |
embryonic tissue | 1.81e-07 | 560 |
presumptive structure | 1.81e-07 | 560 |
germ layer / neural crest derived structure | 1.81e-07 | 560 |
epiblast (generic) | 1.81e-07 | 560 |
embryo | 2.15e-07 | 592 |