FFCP PHASE1:Hg19::chr15:59226177..59226211,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:59226177..59226211,-
|short_description=p10@SLTM
|description=CAGE_peak_10_at_SLTM_5end
|association_with_transcript=-325bp_to_ENST00000380516,NM_00101384...") |
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(13 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79811 | |EntrezGene=79811 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20709 | |HGNC=20709 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NWH9 | |UniProt=Q9NWH9 | ||
|association_with_transcript=-325bp_to_ENST00000380516,NM_001013843,NM_024755,uc002afo.2,uc002afp.2,uc002afq.2,uc002afr.1,uc010bgd.2_5end | |||
|cluster_id=chr15:59226177..59226211,- | |||
|coexpression_cluster_id=C22 | |||
|description=CAGE_peak_10_at_SLTM_5end | |||
|id=chr15:59226177..59226211,- | |||
|ontology_enrichment_celltype=CL:0000037!1.80e-23!172;CL:0000566!1.80e-23!172;CL:0000988!1.72e-21!182;CL:0002032!6.36e-20!165;CL:0000837!6.36e-20!165;CL:0000738!6.57e-18!140;CL:0002031!1.43e-15!124;CL:0002087!9.56e-15!119;CL:0000542!9.95e-15!53;CL:0000051!9.95e-15!53;CL:0000838!2.04e-14!52;CL:0000084!1.91e-10!25;CL:0000827!1.91e-10!25;CL:0000791!2.31e-10!18;CL:0000789!2.31e-10!18;CL:0002420!2.31e-10!18;CL:0002419!2.31e-10!18;CL:0000790!2.31e-10!18;CL:0000763!1.21e-07!112;CL:0000049!1.21e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.20e-30;18!CL:0000789;1.20e-30;18!CL:0002419;1.20e-30;18!CL:0000084;3.91e-27;25!CL:0000625;1.10e-17;11!CL:0000624;2.95e-17;6!CL:0000542;1.32e-11;53!CL:0000623;1.70e-09;3!CL:0000898;3.41e-09;3!CL:0000784;1.06e-08;3!CL:0000767;1.46e-08;3!CL:0000226;2.02e-08;3!CL:0000842;2.02e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.44e-30,18;CL:0000789,1.44e-30,18;CL:0002420,1.44e-30,18;CL:0002419,1.44e-30,18;CL:0000790,1.44e-30,18;CL:0000084,6.71e-27,25;CL:0000827,6.71e-27,25;CL:0000037,1.85e-24,168;CL:0000838,3.21e-23,52;CL:0000542,1.19e-22,53;CL:0000051,1.19e-22,53;CL:0000738,1.34e-22,136;CL:0000988,1.43e-22,177;CL:0000625,1.50e-17,11;CL:0000624,2.44e-17,6;CL:0002032,3.61e-17,161;CL:0000837,3.61e-17,161;CL:0002087,9.16e-17,115;CL:0002031,1.72e-15,120;CL:0000623,1.86e-09,3;CL:0000825,1.86e-09,3;CL:0000898,2.88e-09,3;CL:0000784,6.28e-09,3;CL:0000226,1.49e-08,3;CL:0000842,1.49e-08,3;CL:0000767,1.74e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.20e-30;18!CL:0000051;1.32e-11;53 | |||
|ontology_enrichment_disease=DOID:2531!5.87e-07!51;DOID:0060083!5.87e-07!51;DOID:1240!6.35e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0.893922188854576,0,0,0.631719873426831,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0.305653622991805,0.492603536699674,0.314843125254717,2.75354993794233,3.0706351847777,1.23852898652861,0,0,0,0.697204805222715,0.568676929949686,2.05520307534393,0.553995408531877,1.40381113229099,1.51907609501096,0.671746422719773,0,0.257575567634187,0.290796477559129,0,0.242584061187816,0.232429036905685,0.411167888021826,0,0.28769239232215,0,0,0.344745680736619,0,1.35426486594342,0.188242339542605,0.545812300115692,0,0,0,0,0.329851300186716,0,1.27867425159808,0.290209238628584,0,0,0.251248665256743,0.521482918420201,0,0.605399502633369,0.368277635987565,0.316462387440884,0.211255286311942,0.850417199860174,0.209658645508376,0.786300418025466,0,0.16072558669708,1.14005097496499,0.59675003159727,0.365328307529268,1.75996244461323,0,0.889509253863555,0,0.800791974072025,0,1.32208974556972,0.954053754535364,0.569212969109448,1.17447437874188,0,2.64342657158052,1.68152568894461,1.58030450865046,10.0321982758055,8.25322601773246,6.16804496998528,1.67186495390678,2.93330039970231,5.20792586308207,1.94826728407911,3.00808233589969,4.41908861212256,4.65221178625604,5.1452734115353,2.43373507478783,2.9913649938772,1.47994114143309,0.552700035571697,1.15921234294021,2.52087157375503,3.21048993707656,2.09071047609954,1.58633079776593,4.98186641682498,6.18529401868734,4.30133476433155,2.54852331459277,0,0.950452044448374,1.05402583354441,1.27986611154418,1.24930726552346,1.4206635122641,1.64225599384209,3.62892137804518,6.15112450302067,7.09639579025715,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.43917392846563,0,0,0,0.649094787309367,0.348259474598534,0.132957960518865,1.90792499444274,3.43196946468077,3.34311751196608,0.198762407366705,0,0.347140501607594,0,0.419499436209906,0.550236083880135,0.208994966536811,0.516833518338658,0,0.33472061276467,0,0,0.24406205754817,0.367663080345869,0,0.446498641420399,0.44905874525234,0.112611480483322,0,0,0.549605231791222,0,3.87780264148325,0,0.496971951695318,0.25326102332916,0.529636723252875,0.286836620748814,0.709336764396714,0.560677600142307,0,0,0,0.269421344139376,0,0,0.576175924479999,0,0,0,0.298897361103602,0.23486899728753,0.161872944368132,0.421352420106746,0.204154171254893,0.245668634623536,0,0,0,0,0,0,0.250237039743928,0.277064115484183,0,0,0,0.113432183160021,0.89694817844431,0,0,0.300091096084402,0.103052529238439,0,0,0.675105328965065,0.0974370051611986,0.504867548488229,0.184099797284599,0.161646056818812,0,0,0,0.193260853163297,0,0.573609190778008,0,0.132529768321485,0,0,0,0,0,0,1.38134921352481,0,0,0.236613600079688,0,0.482022059766964,0.220587945464788,0.217879444092406,0.237270619111097,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0.982827216677626,0.590789906681404,1.7658523976586,0.122988438543114,0.343135620597051,0.109750285408626,0,0,0,0,0,0,0.231860809950154,0.352226082707465,0.144366447761074,0.925971025153221,0.380508304469197,0,0.858486162094873,0.492434012174795,0.234004265139238,0.297262324577456,0.93733833986777,0.503946384596579,0.425325291727159,0,0,0,2.46331618947972,0.968532774145487,0.207328115540772,0.144119953416961,0.6312121671319,0.063497894292169,0,0,0,0.205654985406647,0,0.285826432630578,0.224262168690721,0.43596006883328,0.2933531432838,0,0,0.845302752556,0,0,0,0,0.266422179016099,0.428933980974443,0,0,0.325736184293735,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0.224170287987055,6.10795356625974,3.23441362289276,6.16046574142792,0.508189248444927,0,0,0.670065061337395,0.637938751653163,0,0,0.414415513436035,0,0,0.271265023699736,0.207970861530807,0.178428988797162,0,0,0.601892199455438,0,0,0,0,0.0868836144680828,0.195801157462741,0,2.68798433959754,1.72571360654893,2.13455115606889,0.606255142892519,0,0,0,0.153461973288062,0.561320188866147,0.128139149255701,0,0,0,0.308419387605311,0,0.246381468041427,0,0.232420756919918,0,0.200506470303285,0.184161977871793,0.114814448164607,0.546273504020151,0.131124414959424,0,0.0770153371044148,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0.509752546090077,0,0.223874754722178,1.09629938322967,1.0457418040996,0,0.328014645699706,0,0,0.27470839445503,0.330037999682352,0,0,0,0.096670718292122,0,0,0.137836572484531,0.107420244868274,0.145016693914229,0.170453254832202,0,0,0.192190067365106,1.14851441245126,0.4046311234222,0,0,0.6970372701606,0,0,0.869932992075073,0,0.143124886741991,0.744316738719335,0,0,0.255897791311334,0,0.318203247925937,0,0,0.54907405947211,0.117812402345686,0.404364963146632,0,0,0,0.487426979262569,0,0.136499911407986,0,0,0.551365343546124,0,0.438450885253763,0,0,0,0.30982349809975,0,0,0,0,0.709522128141196,0,0,0,0,0.0962221127255121,1.34060455107157,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,1.19115887728894,0.411362273086194,0,0.540031437238115,0.79312517629427,0,0,0.245040215981032,0.557409525377156,0.432807638929335,0.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| ||
|short_description=p10@SLTM | |||
}} | }} |
Latest revision as of 08:24, 18 September 2015
Short description: | p10@SLTM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_SLTM_5end |
Coexpression cluster: | C22_CD4_CD8_Natural_Basophils_CD14_Peripheral_CD19 |
Association with transcript: | -325bp_to_ENST00000380516, NM_001013843, NM_024755, uc002afo.2, uc002afp.2, uc002afq.2, uc002afr.1, uc010bgd.2_5end |
EntrezGene: | SLTM |
HGNC: | 20709 |
UniProt: | Q9NWH9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.44e-30 | 18 |
alpha-beta T cell | 1.44e-30 | 18 |
immature T cell | 1.44e-30 | 18 |
mature T cell | 1.44e-30 | 18 |
immature alpha-beta T cell | 1.44e-30 | 18 |
T cell | 6.71e-27 | 25 |
pro-T cell | 6.71e-27 | 25 |
hematopoietic stem cell | 1.85e-24 | 168 |
lymphoid lineage restricted progenitor cell | 3.21e-23 | 52 |
lymphocyte | 1.19e-22 | 53 |
common lymphoid progenitor | 1.19e-22 | 53 |
leukocyte | 1.34e-22 | 136 |
hematopoietic cell | 1.43e-22 | 177 |
CD8-positive, alpha-beta T cell | 1.50e-17 | 11 |
CD4-positive, alpha-beta T cell | 2.44e-17 | 6 |
hematopoietic oligopotent progenitor cell | 3.61e-17 | 161 |
hematopoietic multipotent progenitor cell | 3.61e-17 | 161 |
nongranular leukocyte | 9.16e-17 | 115 |
hematopoietic lineage restricted progenitor cell | 1.72e-15 | 120 |
natural killer cell | 1.86e-09 | 3 |
pro-NK cell | 1.86e-09 | 3 |
naive T cell | 2.88e-09 | 3 |
plasmacytoid dendritic cell | 6.28e-09 | 3 |
single nucleate cell | 1.49e-08 | 3 |
mononuclear cell | 1.49e-08 | 3 |
basophil | 1.74e-08 | 3 |