FFCP PHASE1:Hg19::chr15:60884706..60884743,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:60884706..60884743,-
|short_description=p1@RORA
|description=CAGE_peak_1_at_RORA_5end
|association_with_transcript=0bp_to_ENST00000449337,ENST00000558234,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6095 | |EntrezGene=6095 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10258 | |HGNC=10258 | ||
|TSSclassifier=strong | |||
|UniProt=P35398 | |UniProt=P35398 | ||
|association_with_transcript=0bp_to_ENST00000449337,ENST00000558234,NM_134262,uc002agt.3_5end | |||
|cluster_id=chr15:60884706..60884743,- | |||
|coexpression_cluster_id=C1212 | |||
|description=CAGE_peak_1_at_RORA_5end | |||
|id=chr15:60884706..60884743,- | |||
|ontology_enrichment_celltype=CL:0000791!1.11e-12!18;CL:0000789!1.11e-12!18;CL:0002420!1.11e-12!18;CL:0002419!1.11e-12!18;CL:0000790!1.11e-12!18;CL:0000084!2.40e-12!25;CL:0000827!2.40e-12!25;CL:0000838!6.05e-09!52;CL:0000625!2.57e-08!11;CL:0000542!2.70e-08!53;CL:0000051!2.70e-08!53 | |||
|ontology_enrichment_celltype_v019=CL:0000791;7.16e-13;18!CL:0000789;7.16e-13;18!CL:0002419;7.16e-13;18!CL:0000084;1.09e-12;25!CL:0000625;1.98e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,7.60e-13,18;CL:0000789,7.60e-13,18;CL:0002420,7.60e-13,18;CL:0002419,7.60e-13,18;CL:0000790,7.60e-13,18;CL:0000084,1.24e-12,25;CL:0000827,1.24e-12,25;CL:0000838,2.87e-09,52;CL:0000542,1.14e-08,53;CL:0000051,1.14e-08,53;CL:0000625,2.04e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000790;7.16e-13;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.31e-36!115;UBERON:0001049!2.54e-10!57;UBERON:0005068!2.54e-10!57;UBERON:0006241!2.54e-10!57;UBERON:0007135!2.54e-10!57;UBERON:0000178!1.20e-09!15;UBERON:0000179!1.20e-09!15;UBERON:0000463!1.20e-09!15;UBERON:0002616!4.72e-08!59;UBERON:0003080!7.02e-08!42;UBERON:0002780!1.13e-07!41;UBERON:0001890!1.13e-07!41;UBERON:0006240!1.13e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;6.61e-10;114!UBERON:0000178;8.65e-10;15!UBERON:0000179;8.65e-10;15!UBERON:0000463;8.65e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.62e-36,114;UBERON:0001049,3.20e-10,56;UBERON:0005068,3.20e-10,56;UBERON:0006241,3.20e-10,56;UBERON:0007135,3.20e-10,56;UBERON:0000178,9.09e-10,15;UBERON:0000179,9.09e-10,15;UBERON:0000463,9.09e-10,15;UBERON:0000073,2.91e-09,53;UBERON:0002616,2.91e-09,53;UBERON:0002780,7.37e-08,41;UBERON:0001890,7.37e-08,41;UBERON:0003080,7.37e-08,41;UBERON:0006240,7.37e-08,41 | |||
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| ||
|short_description=p1@RORA | |||
}} | }} |
Latest revision as of 10:18, 18 September 2015
Short description: | p1@RORA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RORA_5end |
Coexpression cluster: | C1212_immature_CD4_Natural_CD8_cord_lymphangiectasia_Basophils |
Association with transcript: | 0bp_to_ENST00000449337, ENST00000558234, NM_134262, uc002agt.3_5end |
EntrezGene: | RORA |
HGNC: | 10258 |
UniProt: | P35398 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 7.60e-13 | 18 |
alpha-beta T cell | 7.60e-13 | 18 |
immature T cell | 7.60e-13 | 18 |
mature T cell | 7.60e-13 | 18 |
immature alpha-beta T cell | 7.60e-13 | 18 |
T cell | 1.24e-12 | 25 |
pro-T cell | 1.24e-12 | 25 |
lymphoid lineage restricted progenitor cell | 2.87e-09 | 52 |
lymphocyte | 1.14e-08 | 53 |
common lymphoid progenitor | 1.14e-08 | 53 |
CD8-positive, alpha-beta T cell | 2.04e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.62e-36 | 114 |
neural tube | 3.20e-10 | 56 |
neural rod | 3.20e-10 | 56 |
future spinal cord | 3.20e-10 | 56 |
neural keel | 3.20e-10 | 56 |
blood | 9.09e-10 | 15 |
haemolymphatic fluid | 9.09e-10 | 15 |
organism substance | 9.09e-10 | 15 |
regional part of nervous system | 2.91e-09 | 53 |
regional part of brain | 2.91e-09 | 53 |
regional part of forebrain | 7.37e-08 | 41 |
forebrain | 7.37e-08 | 41 |
anterior neural tube | 7.37e-08 | 41 |
future forebrain | 7.37e-08 | 41 |